Wall clock time and date at job start Tue Mar 31 2020 11:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46823 * 2 1 4 4 C 1.31000 * 119.99912 * 128.11207 * 3 2 1 5 5 C 1.50704 * 120.00089 * 7.39047 * 4 3 2 6 6 C 1.52996 * 109.46822 * 126.45466 * 5 4 3 7 7 C 1.53006 * 109.47187 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47545 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47033 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.46935 * 179.97438 * 9 8 7 11 11 C 1.46898 * 110.99895 * 66.04477 * 10 9 8 12 12 C 1.50700 * 109.47210 * 58.33781 * 11 10 9 13 13 H 1.08004 * 119.99730 * 5.14179 * 12 11 10 14 14 C 1.37875 * 120.00251 * 185.13712 * 12 11 10 15 15 N 1.31519 * 119.99746 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00061 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47104 * 89.99557 * 16 14 12 18 18 H 1.48497 * 109.47179 * 209.99929 * 16 14 12 19 19 H 1.48500 * 109.47035 * 329.99952 * 16 14 12 20 20 C 1.46899 * 110.99930 * 189.99951 * 10 9 8 21 21 C 1.50692 * 109.46984 * 170.95091 * 20 10 9 22 22 C 1.38674 * 120.41941 * 275.74775 * 21 20 10 23 23 C 1.38632 * 118.41938 * 179.78032 * 22 21 20 24 24 C 1.38222 * 119.16266 * 0.52104 * 23 22 21 25 25 N 1.31853 * 120.76261 * 359.71736 * 24 23 22 26 26 C 1.31883 * 121.72866 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47051 * 60.00092 * 1 2 3 28 28 H 1.08999 * 109.46870 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47400 * 300.00332 * 1 2 3 30 30 H 1.08992 * 109.46933 * 240.00084 * 2 1 3 31 31 H 1.08993 * 109.47016 * 119.99757 * 2 1 3 32 32 H 1.08001 * 120.00307 * 307.83127 * 3 2 1 33 33 H 1.08003 * 120.00008 * 187.39432 * 4 3 2 34 34 H 1.08993 * 109.47349 * 246.45703 * 5 4 3 35 35 H 1.09002 * 109.46862 * 6.45772 * 5 4 3 36 36 H 1.09002 * 109.47604 * 300.00165 * 6 5 4 37 37 H 1.09000 * 109.47596 * 60.00200 * 6 5 4 38 38 H 1.09002 * 109.46833 * 300.00453 * 7 6 5 39 39 H 1.09000 * 109.46840 * 59.99553 * 7 6 5 40 40 H 1.09000 * 109.46538 * 300.00305 * 8 7 6 41 41 H 1.09005 * 109.46749 * 59.99722 * 8 7 6 42 42 H 1.08997 * 109.47168 * 299.99543 * 9 8 7 43 43 H 1.09002 * 109.47136 * 60.00224 * 9 8 7 44 44 H 1.08997 * 109.47580 * 178.33721 * 11 10 9 45 45 H 1.08997 * 109.47302 * 298.34193 * 11 10 9 46 46 H 0.97004 * 119.99440 * 180.02562 * 15 14 12 47 47 H 1.08997 * 109.46990 * 290.94878 * 20 10 9 48 48 H 1.08997 * 109.47206 * 50.95012 * 20 10 9 49 49 H 1.07999 * 120.78963 * 0.02871 * 22 21 20 50 50 H 1.08007 * 120.41932 * 180.21820 * 23 22 21 51 51 H 1.08000 * 119.62191 * 179.74947 * 24 23 22 52 52 H 1.08001 * 119.62004 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9108 1.8050 0.8926 5 6 3.5436 0.7920 1.8116 6 6 5.0668 0.9076 1.7263 7 6 5.7095 -0.1212 2.6589 8 6 7.2327 -0.0052 2.5741 9 6 7.8751 -1.0345 3.5062 10 7 9.3377 -0.9235 3.4243 11 6 9.7984 0.3658 3.9567 12 6 9.3493 0.5075 5.3882 13 1 8.8513 -0.3140 5.8818 14 6 9.5740 1.6859 6.0678 15 7 9.1815 1.8097 7.3169 16 14 10.4347 3.1070 5.2140 17 1 9.4250 3.9712 4.5515 18 1 11.1874 3.9038 6.2158 19 1 11.3760 2.5757 4.1956 20 6 9.9901 -2.0426 4.1171 21 6 11.4686 -2.0197 3.8266 22 6 11.9664 -2.6036 2.6715 23 6 13.3330 -2.5545 2.4435 24 6 14.1494 -1.9391 3.3737 25 7 13.6415 -1.3986 4.4639 26 6 12.3463 -1.4221 4.7110 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6715 2.1212 -0.7387 33 1 3.1815 2.8477 0.9700 34 1 3.2218 0.9797 2.8359 35 1 3.2381 -0.2106 1.5126 36 1 5.3888 0.7200 0.7020 37 1 5.3725 1.9103 2.0253 38 1 5.3876 0.0660 3.6833 39 1 5.4038 -1.1237 2.3595 40 1 7.5548 -0.1921 1.5497 41 1 7.5379 0.9974 2.8737 42 1 7.5531 -0.8479 4.5306 43 1 7.5698 -2.0369 3.2061 44 1 10.8866 0.4097 3.9113 45 1 9.3770 1.1760 3.3618 46 1 9.3394 2.6389 7.7949 47 1 9.8293 -1.9484 5.1910 48 1 9.5657 -2.9836 3.7672 49 1 11.3048 -3.0816 1.9643 50 1 13.7549 -2.9958 1.5525 51 1 15.2155 -1.9002 3.2055 52 1 11.9671 -0.9690 5.6151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208188232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:54 Heat of formation + Delta-G solvation = 13.115685 kcal Electronic energy + Delta-G solvation = -25847.715735 eV Core-core repulsion = 22424.916510 eV Total energy + Delta-G solvation = -3422.799225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10015 -38.97492 -38.02557 -35.78996 -34.63897 -33.66440 -32.79193 -32.04263 -30.29282 -29.47487 -27.09536 -25.69440 -24.45137 -24.23463 -23.89674 -22.58823 -21.77191 -21.05682 -19.16260 -18.98923 -17.83795 -17.23856 -17.03418 -16.60587 -16.58301 -16.19402 -15.88858 -15.67332 -15.17210 -14.89810 -14.56323 -14.53004 -14.47564 -14.10966 -13.92521 -13.80763 -13.49657 -13.23938 -13.17114 -12.95823 -12.91369 -12.69903 -12.50622 -12.41437 -12.21461 -12.07179 -11.94231 -11.79600 -11.75234 -11.58253 -11.35063 -11.26261 -11.08719 -10.77990 -10.60991 -10.28120 -9.85448 -9.77784 -8.95916 -8.32110 -6.33294 0.26816 0.47297 1.27127 1.31338 1.36031 1.40693 2.29866 2.89255 3.04441 3.41299 3.64803 3.83239 3.98192 4.05052 4.10129 4.11305 4.21249 4.24714 4.25636 4.29614 4.38851 4.44386 4.52489 4.61573 4.67663 4.68501 4.74922 4.81569 4.83406 4.90755 4.96693 4.97550 5.00898 5.02715 5.07429 5.11549 5.17066 5.19379 5.24874 5.28164 5.29651 5.37673 5.40506 5.43968 5.53208 5.57442 5.60881 5.84186 5.91357 6.01870 6.10369 6.33799 6.43283 6.72491 7.13366 7.32614 8.83782 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.002755 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.401229 B =10159.817218 C =11723.508378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.162 4.162 4 C -0.170 4.170 5 C -0.098 4.098 6 C -0.106 4.106 7 C -0.109 4.109 8 C -0.103 4.103 9 C 0.062 3.938 10 N -0.522 5.522 11 C 0.165 3.835 12 C -0.531 4.531 13 H 0.043 0.957 14 C 0.022 3.978 15 N -0.942 5.942 16 Si 0.928 3.072 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.259 1.259 20 C 0.102 3.898 21 C -0.123 4.123 22 C -0.060 4.060 23 C -0.166 4.166 24 C 0.076 3.924 25 N -0.521 5.521 26 C 0.089 3.911 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.036 0.964 42 H 0.017 0.983 43 H 0.082 0.918 44 H 0.017 0.983 45 H 0.024 0.976 46 H 0.264 0.736 47 H 0.024 0.976 48 H 0.099 0.901 49 H 0.159 0.841 50 H 0.173 0.827 51 H 0.180 0.820 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -8.210 -17.554 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.180 4.180 4 C -0.188 4.188 5 C -0.135 4.135 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.141 4.141 9 C -0.066 4.066 10 N -0.245 5.245 11 C 0.037 3.963 12 C -0.570 4.570 13 H 0.061 0.939 14 C -0.176 4.176 15 N -0.583 5.583 16 Si 0.753 3.247 17 H -0.191 1.191 18 H -0.212 1.212 19 H -0.184 1.184 20 C -0.027 4.027 21 C -0.126 4.126 22 C -0.086 4.086 23 C -0.185 4.185 24 C -0.081 4.081 25 N -0.231 5.231 26 C -0.067 4.067 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.100 0.900 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.117 0.883 49 H 0.177 0.823 50 H 0.190 0.810 51 H 0.197 0.803 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.554 -7.718 -17.303 20.048 hybrid contribution -0.372 1.076 1.035 1.539 sum -6.927 -6.642 -16.268 18.888 Atomic orbital electron populations 1.21692 0.94559 1.02131 1.01855 1.20858 0.96602 0.94234 1.02941 1.22966 0.98222 0.98239 0.98557 1.22888 0.98484 0.99355 0.98034 1.20857 0.94513 0.99163 0.98916 1.21437 0.94523 0.98662 0.99736 1.21478 0.93938 1.00037 0.99214 1.21428 0.95047 0.98154 0.99455 1.22016 0.87039 0.99507 0.97987 1.62558 1.06200 1.02020 1.53687 1.19945 0.95163 0.89225 0.91963 1.21755 1.37606 0.99726 0.97885 0.93882 1.25644 0.95833 1.01034 0.95104 1.70046 1.48986 1.27616 1.11630 0.85991 0.79653 0.80129 0.78920 1.19060 1.21201 1.18352 1.20847 0.89817 0.95148 0.96846 1.20807 0.96458 0.98975 0.96318 1.21773 0.96224 0.95681 0.94964 1.22490 0.93764 1.00692 1.01578 1.23313 1.01915 0.93611 0.89297 1.67638 1.14722 1.18247 1.22447 1.22567 0.88980 0.95886 0.99251 0.92280 0.91790 0.93211 0.90758 0.90727 0.86753 0.87736 0.92031 0.89606 0.91398 0.93464 0.93617 0.90444 0.91001 0.94543 0.96492 0.89966 0.96477 0.95807 0.92715 0.95721 0.88334 0.82312 0.80956 0.80286 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 71.98 0.71 -1.15 16 2 C -0.11 -1.64 6.01 29.85 0.18 -1.46 16 3 C -0.16 -2.79 9.51 25.65 0.24 -2.54 16 4 C -0.17 -3.36 9.51 25.65 0.24 -3.12 16 5 C -0.10 -2.04 5.31 29.85 0.16 -1.88 16 6 C -0.11 -2.53 5.20 30.60 0.16 -2.37 16 7 C -0.11 -2.91 5.21 30.60 0.16 -2.75 16 8 C -0.10 -3.33 5.14 30.59 0.16 -3.17 16 9 C 0.06 2.22 4.73 86.30 0.41 2.63 16 10 N -0.52 -20.24 4.71 -905.40 -4.26 -24.51 16 11 C 0.16 7.75 3.66 85.56 0.31 8.07 16 12 C -0.53 -29.30 7.98 25.60 0.20 -29.10 16 13 H 0.04 2.62 6.14 -2.91 -0.02 2.60 16 14 C 0.02 1.29 5.47 84.65 0.46 1.75 16 15 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 16 Si 0.93 45.48 27.37 68.60 1.88 47.35 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 19 H -0.26 -12.38 6.69 99.48 0.67 -11.72 16 20 C 0.10 3.65 4.96 85.55 0.42 4.08 16 21 C -0.12 -4.26 4.69 -19.77 -0.09 -4.35 16 22 C -0.06 -1.59 9.88 22.47 0.22 -1.36 16 23 C -0.17 -3.77 10.11 22.36 0.23 -3.54 16 24 C 0.08 2.07 11.18 84.69 0.95 3.02 16 25 N -0.52 -19.29 10.36 -195.84 -2.03 -21.32 16 26 C 0.09 3.57 9.44 84.67 0.80 4.37 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.16 5.31 -2.39 -0.01 1.15 16 32 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.10 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.58 5.29 -2.39 -0.01 1.57 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.04 1.40 6.59 -2.38 -0.02 1.38 16 42 H 0.02 0.73 6.28 -2.39 -0.02 0.71 16 43 H 0.08 2.41 7.94 -2.39 -0.02 2.39 16 44 H 0.02 0.85 5.52 -2.39 -0.01 0.84 16 45 H 0.02 1.15 5.69 -2.39 -0.01 1.13 16 46 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 47 H 0.02 1.05 6.52 -2.39 -0.02 1.04 16 48 H 0.10 2.86 7.94 -2.39 -0.02 2.84 16 49 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 50 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 51 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 52 H 0.12 5.73 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -67.70 406.51 2.63 -65.07 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.82 Total: 24.48 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 5.93 Total: -32.87 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -5.99 Total: -104.02 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.35 kcal Total: -67.70 2.63 -65.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208188232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.182 kcal (2) G-P(sol) polarization free energy of solvation -67.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds