Wall clock time and date at job start Tue Mar 31 2020 11:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47200 * 2 1 4 4 C 1.46908 * 110.99917 * 59.41167 * 3 2 1 5 5 C 1.50700 * 109.47024 * 269.93716 * 4 3 2 6 6 H 1.07993 * 120.00296 * 353.78249 * 5 4 3 7 7 C 1.37875 * 119.99414 * 173.79047 * 5 4 3 8 8 N 1.31524 * 119.99777 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00574 * 359.97438 * 7 5 4 10 10 H 1.48490 * 109.47200 * 90.00024 * 9 7 5 11 11 H 1.48501 * 109.47388 * 210.00381 * 9 7 5 12 12 H 1.48499 * 109.46634 * 330.00234 * 9 7 5 13 13 C 1.46896 * 111.00381 * 183.36655 * 3 2 1 14 14 C 1.53003 * 109.46775 * 78.44400 * 13 3 2 15 15 H 1.09001 * 109.45151 * 176.77585 * 14 13 3 16 16 C 1.53041 * 109.46246 * 56.80807 * 14 13 3 17 17 C 1.53112 * 109.27742 * 180.80235 * 16 14 13 18 18 C 1.53122 * 109.16388 * 57.65095 * 17 16 14 19 19 C 1.53033 * 109.27777 * 302.34853 * 18 17 16 20 20 N 1.46839 * 109.46560 * 296.75167 * 14 13 3 21 21 C 1.46901 * 110.99925 * 305.85752 * 20 14 13 22 22 C 1.50695 * 109.47136 * 299.99580 * 21 20 14 23 23 C 1.38237 * 119.99995 * 89.17978 * 22 21 20 24 24 C 1.38240 * 119.99817 * 179.97438 * 23 22 21 25 25 C 1.38233 * 120.00249 * 0.07196 * 24 23 22 26 26 C 1.38228 * 119.99982 * 359.88682 * 25 24 23 27 27 C 1.38233 * 120.00145 * 269.15837 * 22 21 20 28 28 H 1.08993 * 109.47234 * 48.29775 * 1 2 3 29 29 H 1.09006 * 109.46974 * 168.30223 * 1 2 3 30 30 H 1.09004 * 109.46861 * 288.29406 * 1 2 3 31 31 H 1.09001 * 109.47386 * 240.00425 * 2 1 3 32 32 H 1.08998 * 109.47713 * 120.00014 * 2 1 3 33 33 H 1.08997 * 109.46825 * 29.93573 * 4 3 2 34 34 H 1.08998 * 109.46789 * 149.93430 * 4 3 2 35 35 H 0.96998 * 119.99676 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47294 * 318.44757 * 13 3 2 37 37 H 1.08996 * 109.47223 * 198.44355 * 13 3 2 38 38 H 1.09007 * 109.50443 * 60.86047 * 16 14 13 39 39 H 1.08996 * 109.53057 * 300.76255 * 16 14 13 40 40 H 1.09001 * 109.52310 * 297.74908 * 17 16 14 41 41 H 1.08996 * 109.52581 * 177.55950 * 17 16 14 42 42 H 1.09000 * 109.50818 * 182.40020 * 18 17 16 43 43 H 1.09003 * 109.53214 * 62.30629 * 18 17 16 44 44 H 1.09006 * 109.46187 * 299.15757 * 19 18 17 45 45 H 1.09002 * 109.45588 * 179.18600 * 19 18 17 46 46 H 1.09005 * 109.47107 * 179.97438 * 21 20 14 47 47 H 1.09000 * 109.47288 * 59.99480 * 21 20 14 48 48 H 1.07999 * 119.99986 * 359.70549 * 23 22 21 49 49 H 1.08003 * 119.99732 * 179.97438 * 24 23 22 50 50 H 1.07999 * 120.00013 * 180.02562 * 25 24 23 51 51 H 1.08001 * 120.00439 * 180.11029 * 26 25 24 52 52 H 1.08003 * 120.00237 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5372 2.1140 1.1807 5 6 0.2198 2.7722 0.8609 6 1 -0.1667 2.7453 -0.1472 7 6 -0.4919 3.4090 1.8553 8 7 -1.6419 3.9831 1.5764 9 14 0.1763 3.4552 3.5991 10 1 1.0215 4.6636 3.7735 11 1 -0.9539 3.4985 4.5614 12 1 0.9925 2.2400 3.8487 13 6 3.4859 1.4251 -0.0805 14 6 3.9241 1.1778 -1.5254 15 1 5.0084 1.2643 -1.5957 16 6 3.2696 2.2146 -2.4413 17 6 3.6951 1.9510 -3.8884 18 6 3.2985 0.5240 -4.2769 19 6 3.9522 -0.4637 -3.3078 20 7 3.5131 -0.1703 -1.9376 21 6 4.0108 -1.1830 -0.9971 22 6 5.5161 -1.1297 -0.9516 23 6 6.1513 -0.2934 -0.0527 24 6 7.5322 -0.2449 -0.0107 25 6 8.2779 -1.0316 -0.8686 26 6 7.6427 -1.8684 -1.7669 27 6 6.2618 -1.9173 -1.8086 28 1 -0.3633 0.6836 -0.7672 29 1 -0.3633 -1.0064 -0.2084 30 1 -0.3633 0.3226 0.9758 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4038 1.4174 2.0083 34 1 2.2654 2.8753 1.4602 35 1 -2.1425 4.4314 2.2760 36 1 3.9064 0.6530 0.5638 37 1 3.8410 2.4029 0.2446 38 1 3.5873 3.2143 -2.1449 39 1 2.1852 2.1386 -2.3612 40 1 4.7754 2.0657 -3.9771 41 1 3.1971 2.6602 -4.5494 42 1 3.6367 0.3158 -5.2920 43 1 2.2146 0.4203 -4.2261 44 1 5.0364 -0.3696 -3.3697 45 1 3.6601 -1.4798 -3.5730 46 1 3.6917 -2.1721 -1.3257 47 1 3.6100 -0.9839 -0.0031 48 1 5.5687 0.3252 0.6138 49 1 8.0284 0.4088 0.6914 50 1 9.3567 -0.9939 -0.8355 51 1 8.2252 -2.4843 -2.4360 52 1 5.7656 -2.5713 -2.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208588414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:06 Heat of formation + Delta-G solvation = 46.392543 kcal Electronic energy + Delta-G solvation = -28613.781477 eV Core-core repulsion = 25192.425245 eV Total energy + Delta-G solvation = -3421.356232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47116 -38.47220 -36.45351 -34.10089 -32.54224 -31.70100 -30.86103 -30.65141 -29.42834 -27.63890 -26.48026 -24.67853 -23.22547 -22.42431 -22.09277 -21.63130 -20.79346 -19.81114 -18.85628 -16.90012 -16.63992 -15.80779 -15.61159 -15.30192 -15.16153 -14.71497 -14.59771 -14.02707 -13.87498 -13.58310 -13.35300 -13.34087 -13.22270 -13.10778 -12.58975 -12.39513 -12.31884 -11.92961 -11.72219 -11.62183 -11.34135 -11.23917 -11.05615 -10.95322 -10.86015 -10.61310 -10.52912 -10.36723 -10.22721 -10.09214 -10.01612 -9.91352 -9.51981 -9.14079 -9.01506 -8.84709 -8.45305 -7.99012 -7.08910 -5.94234 -3.87530 1.21563 1.27729 3.32108 3.40070 3.41434 3.62941 4.09798 4.49759 4.70328 4.70908 4.85940 4.88036 4.96032 5.00667 5.07165 5.14983 5.27001 5.36279 5.37342 5.44284 5.54667 5.60380 5.65858 5.72674 5.77383 5.84429 5.89505 5.92134 5.94313 6.06094 6.10264 6.17082 6.18369 6.28158 6.31003 6.32905 6.40163 6.43065 6.50216 6.53165 6.58642 6.79425 6.85664 6.88565 6.95990 7.02861 7.18384 7.28053 7.33904 7.48944 7.79798 8.10410 8.26720 8.81818 9.20278 9.69126 11.19208 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.004215 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.769219 B = 6640.838020 C = 7465.866026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.046 3.954 3 N -0.508 5.508 4 C 0.155 3.845 5 C -0.486 4.486 6 H 0.084 0.916 7 C 0.064 3.936 8 N -0.904 5.904 9 Si 0.867 3.133 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.052 3.948 14 C 0.095 3.905 15 H 0.038 0.962 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.114 4.114 19 C 0.053 3.947 20 N -0.504 5.504 21 C 0.076 3.924 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.111 4.111 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.001 0.999 33 H -0.006 1.006 34 H 0.010 0.990 35 H 0.260 0.740 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.738 -11.580 -8.548 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.082 4.082 3 N -0.232 5.232 4 C 0.029 3.971 5 C -0.524 4.524 6 H 0.102 0.898 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.695 3.305 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.077 4.077 14 C -0.013 4.013 15 H 0.056 0.944 16 C -0.141 4.141 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.075 4.075 20 N -0.226 5.226 21 C -0.051 4.051 22 C -0.114 4.114 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.130 4.130 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.019 0.981 33 H 0.012 0.988 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.113 0.887 48 H 0.144 0.856 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.849 -11.246 -8.881 22.119 hybrid contribution 1.632 -0.188 1.870 2.490 sum 18.481 -11.434 -7.011 22.835 Atomic orbital electron populations 1.21727 0.95087 0.98646 1.03717 1.22603 0.96322 0.89399 0.99884 1.61911 1.05324 1.13454 1.42544 1.20341 0.96739 0.92675 0.87331 1.21095 1.01984 1.31669 0.97678 0.89845 1.24899 0.94902 0.95706 0.98120 1.69896 1.14068 1.37398 1.33098 0.86995 0.78759 0.78675 0.86067 1.20488 1.21425 1.19448 1.22396 0.91246 0.99954 0.94139 1.21694 0.96001 0.88136 0.95503 0.94443 1.21487 1.03821 0.96805 0.91942 1.21607 0.99871 0.96487 0.97908 1.21551 1.01753 0.94737 0.97164 1.22127 0.97352 0.98978 0.89028 1.62454 1.57055 1.01941 1.01169 1.21584 0.87624 0.96619 0.99318 1.20764 0.97949 0.96668 0.96055 1.21375 0.94638 0.98507 0.98515 1.21174 0.94146 0.99363 0.99220 1.21116 0.99639 0.97090 0.96461 1.21112 0.94670 0.99329 0.99111 1.21069 0.93850 0.99176 0.98861 0.91555 0.95254 0.92178 0.87765 0.98141 0.98837 0.97155 0.92959 0.95508 0.91288 0.92218 0.88542 0.93349 0.92150 0.92421 0.90824 0.94923 0.91395 0.90115 0.88710 0.85551 0.86251 0.86457 0.86419 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.65 37.16 0.32 -2.38 16 2 C 0.05 0.84 4.07 -3.82 -0.02 0.83 16 3 N -0.51 -10.10 3.46 -236.07 -0.82 -10.91 16 4 C 0.16 3.69 3.58 -4.97 -0.02 3.67 16 5 C -0.49 -13.45 7.75 -34.44 -0.27 -13.72 16 6 H 0.08 2.54 7.35 -52.49 -0.39 2.16 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 9 Si 0.87 21.58 27.60 -169.99 -4.69 16.89 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.51 6.37 56.52 0.36 -6.15 16 13 C 0.05 0.85 4.10 -3.82 -0.02 0.84 16 14 C 0.10 1.36 1.57 -67.72 -0.11 1.25 16 15 H 0.04 0.54 6.44 -51.93 -0.33 0.20 16 16 C -0.10 -1.55 5.19 -26.65 -0.14 -1.68 16 17 C -0.12 -1.51 6.00 -26.61 -0.16 -1.67 16 18 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 19 C 0.05 0.60 4.80 -3.84 -0.02 0.59 16 20 N -0.50 -6.56 2.61 -228.13 -0.60 -7.15 16 21 C 0.08 0.92 3.95 -4.98 -0.02 0.90 16 22 C -0.11 -1.29 4.05 -104.63 -0.42 -1.72 16 23 C -0.11 -1.32 7.88 -39.58 -0.31 -1.63 16 24 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 25 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 26 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 27 C -0.11 -1.14 8.14 -39.58 -0.32 -1.47 16 28 H 0.07 1.46 7.37 -51.93 -0.38 1.08 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.37 6.85 -51.93 -0.36 1.01 16 31 H 0.10 1.73 4.30 -51.93 -0.22 1.51 16 32 H 0.00 0.01 7.41 -51.93 -0.38 -0.37 16 33 H -0.01 -0.15 6.24 -51.93 -0.32 -0.47 16 34 H 0.01 0.25 7.04 -51.93 -0.37 -0.12 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.03 0.42 3.85 -51.93 -0.20 0.22 16 37 H 0.07 1.17 7.43 -51.93 -0.39 0.79 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.75 7.50 -51.93 -0.39 1.36 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.03 0.38 6.56 -51.93 -0.34 0.04 16 45 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 46 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 47 H 0.09 1.28 4.10 -51.93 -0.21 1.07 16 48 H 0.13 1.55 5.35 -52.49 -0.28 1.27 16 49 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 51 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 52 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -29.61 372.91 -11.47 -41.07 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.81 Total: 2.23 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -2.95 Total: -20.83 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.64 Total: -44.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.69 Total: 16.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.61 -11.47 -41.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208588414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.464 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds