Wall clock time and date at job start Tue Mar 31 2020 11:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47200 * 2 1 4 4 C 1.46908 * 110.99917 * 59.41167 * 3 2 1 5 5 C 1.50700 * 109.47024 * 269.93716 * 4 3 2 6 6 H 1.07993 * 120.00296 * 353.78249 * 5 4 3 7 7 C 1.37875 * 119.99414 * 173.79047 * 5 4 3 8 8 N 1.31524 * 119.99777 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00574 * 359.97438 * 7 5 4 10 10 H 1.48490 * 109.47200 * 90.00024 * 9 7 5 11 11 H 1.48501 * 109.47388 * 210.00381 * 9 7 5 12 12 H 1.48499 * 109.46634 * 330.00234 * 9 7 5 13 13 C 1.46896 * 111.00381 * 183.36655 * 3 2 1 14 14 C 1.53003 * 109.46775 * 78.44400 * 13 3 2 15 15 H 1.09001 * 109.45151 * 176.77585 * 14 13 3 16 16 C 1.53041 * 109.46246 * 56.80807 * 14 13 3 17 17 C 1.53112 * 109.27742 * 180.80235 * 16 14 13 18 18 C 1.53122 * 109.16388 * 57.65095 * 17 16 14 19 19 C 1.53033 * 109.27777 * 302.34853 * 18 17 16 20 20 N 1.46839 * 109.46560 * 296.75167 * 14 13 3 21 21 C 1.46901 * 110.99925 * 305.85752 * 20 14 13 22 22 C 1.50695 * 109.47136 * 299.99580 * 21 20 14 23 23 C 1.38237 * 119.99995 * 89.17978 * 22 21 20 24 24 C 1.38240 * 119.99817 * 179.97438 * 23 22 21 25 25 C 1.38233 * 120.00249 * 0.07196 * 24 23 22 26 26 C 1.38228 * 119.99982 * 359.88682 * 25 24 23 27 27 C 1.38233 * 120.00145 * 269.15837 * 22 21 20 28 28 H 1.08993 * 109.47234 * 48.29775 * 1 2 3 29 29 H 1.09006 * 109.46974 * 168.30223 * 1 2 3 30 30 H 1.09004 * 109.46861 * 288.29406 * 1 2 3 31 31 H 1.09001 * 109.47386 * 240.00425 * 2 1 3 32 32 H 1.08998 * 109.47713 * 120.00014 * 2 1 3 33 33 H 1.08997 * 109.46825 * 29.93573 * 4 3 2 34 34 H 1.08998 * 109.46789 * 149.93430 * 4 3 2 35 35 H 0.96998 * 119.99676 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47294 * 318.44757 * 13 3 2 37 37 H 1.08996 * 109.47223 * 198.44355 * 13 3 2 38 38 H 1.09007 * 109.50443 * 60.86047 * 16 14 13 39 39 H 1.08996 * 109.53057 * 300.76255 * 16 14 13 40 40 H 1.09001 * 109.52310 * 297.74908 * 17 16 14 41 41 H 1.08996 * 109.52581 * 177.55950 * 17 16 14 42 42 H 1.09000 * 109.50818 * 182.40020 * 18 17 16 43 43 H 1.09003 * 109.53214 * 62.30629 * 18 17 16 44 44 H 1.09006 * 109.46187 * 299.15757 * 19 18 17 45 45 H 1.09002 * 109.45588 * 179.18600 * 19 18 17 46 46 H 1.09005 * 109.47107 * 179.97438 * 21 20 14 47 47 H 1.09000 * 109.47288 * 59.99480 * 21 20 14 48 48 H 1.07999 * 119.99986 * 359.70549 * 23 22 21 49 49 H 1.08003 * 119.99732 * 179.97438 * 24 23 22 50 50 H 1.07999 * 120.00013 * 180.02562 * 25 24 23 51 51 H 1.08001 * 120.00439 * 180.11029 * 26 25 24 52 52 H 1.08003 * 120.00237 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5372 2.1140 1.1807 5 6 0.2198 2.7722 0.8609 6 1 -0.1667 2.7453 -0.1472 7 6 -0.4919 3.4090 1.8553 8 7 -1.6419 3.9831 1.5764 9 14 0.1763 3.4552 3.5991 10 1 1.0215 4.6636 3.7735 11 1 -0.9539 3.4985 4.5614 12 1 0.9925 2.2400 3.8487 13 6 3.4859 1.4251 -0.0805 14 6 3.9241 1.1778 -1.5254 15 1 5.0084 1.2643 -1.5957 16 6 3.2696 2.2146 -2.4413 17 6 3.6951 1.9510 -3.8884 18 6 3.2985 0.5240 -4.2769 19 6 3.9522 -0.4637 -3.3078 20 7 3.5131 -0.1703 -1.9376 21 6 4.0108 -1.1830 -0.9971 22 6 5.5161 -1.1297 -0.9516 23 6 6.1513 -0.2934 -0.0527 24 6 7.5322 -0.2449 -0.0107 25 6 8.2779 -1.0316 -0.8686 26 6 7.6427 -1.8684 -1.7669 27 6 6.2618 -1.9173 -1.8086 28 1 -0.3633 0.6836 -0.7672 29 1 -0.3633 -1.0064 -0.2084 30 1 -0.3633 0.3226 0.9758 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4038 1.4174 2.0083 34 1 2.2654 2.8753 1.4602 35 1 -2.1425 4.4314 2.2760 36 1 3.9064 0.6530 0.5638 37 1 3.8410 2.4029 0.2446 38 1 3.5873 3.2143 -2.1449 39 1 2.1852 2.1386 -2.3612 40 1 4.7754 2.0657 -3.9771 41 1 3.1971 2.6602 -4.5494 42 1 3.6367 0.3158 -5.2920 43 1 2.2146 0.4203 -4.2261 44 1 5.0364 -0.3696 -3.3697 45 1 3.6601 -1.4798 -3.5730 46 1 3.6917 -2.1721 -1.3257 47 1 3.6100 -0.9839 -0.0031 48 1 5.5687 0.3252 0.6138 49 1 8.0284 0.4088 0.6914 50 1 9.3567 -0.9939 -0.8355 51 1 8.2252 -2.4843 -2.4360 52 1 5.7656 -2.5713 -2.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208588414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:05 Heat of formation + Delta-G solvation = 30.825020 kcal Electronic energy + Delta-G solvation = -28614.456536 eV Core-core repulsion = 25192.425245 eV Total energy + Delta-G solvation = -3422.031290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47417 -39.42192 -37.93237 -35.10706 -34.55610 -33.03589 -31.69784 -31.52662 -31.06498 -29.38382 -27.51142 -26.02452 -24.25971 -23.89813 -23.22900 -22.62405 -22.06129 -21.17617 -20.04525 -18.80050 -17.68311 -16.92621 -16.74663 -16.53675 -16.25522 -16.07769 -15.74306 -15.42123 -15.07272 -14.86193 -14.85223 -14.57543 -14.38695 -14.11794 -14.08417 -13.55674 -13.24618 -13.21091 -13.09233 -13.01359 -12.85951 -12.64623 -12.28220 -12.22224 -12.17580 -12.04138 -11.95294 -11.84984 -11.69459 -11.48293 -11.35187 -11.22237 -11.08449 -11.02312 -10.67297 -9.78117 -9.65305 -9.06830 -8.66988 -8.18453 -6.16167 0.44335 0.51325 1.33521 1.35236 1.44410 2.38323 2.82286 3.11796 3.14426 3.34963 3.85234 3.89790 3.96583 4.00441 4.15602 4.15912 4.27942 4.31641 4.40378 4.43305 4.50439 4.53020 4.61930 4.64968 4.66431 4.78184 4.79788 4.82690 4.86554 4.91643 4.94064 4.99941 5.04444 5.08157 5.14441 5.16444 5.17117 5.18985 5.23239 5.39174 5.45652 5.53432 5.58597 5.64004 5.67674 5.70529 5.74009 5.76529 6.13714 6.15943 6.25029 6.31949 6.66196 6.82026 6.90173 7.44597 8.98442 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.004215 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.769219 B = 6640.838020 C = 7465.866026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.053 3.947 3 N -0.520 5.520 4 C 0.166 3.834 5 C -0.480 4.480 6 H 0.040 0.960 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.255 1.255 13 C 0.053 3.947 14 C 0.110 3.890 15 H 0.045 0.955 16 C -0.102 4.102 17 C -0.116 4.116 18 C -0.112 4.112 19 C 0.057 3.943 20 N -0.516 5.516 21 C 0.079 3.921 22 C -0.121 4.121 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.126 4.126 27 C -0.114 4.114 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.128 0.872 32 H 0.008 0.992 33 H -0.011 1.011 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.037 0.963 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.130 0.870 50 H 0.139 0.861 51 H 0.142 0.858 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.768 -13.694 -9.029 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.075 4.075 3 N -0.244 5.244 4 C 0.039 3.961 5 C -0.519 4.519 6 H 0.059 0.941 7 C -0.191 4.191 8 N -0.595 5.595 9 Si 0.760 3.240 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.179 1.179 13 C -0.076 4.076 14 C 0.001 3.999 15 H 0.063 0.937 16 C -0.140 4.140 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.070 4.070 20 N -0.239 5.239 21 C -0.048 4.048 22 C -0.123 4.123 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.144 4.144 27 C -0.132 4.132 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.145 0.855 32 H 0.026 0.974 33 H 0.007 0.993 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.132 0.868 49 H 0.148 0.852 50 H 0.157 0.843 51 H 0.159 0.841 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 19.905 -13.378 -9.374 25.750 hybrid contribution 0.710 0.436 1.911 2.085 sum 20.615 -12.942 -7.463 25.460 Atomic orbital electron populations 1.21628 0.96621 0.99525 1.00626 1.22644 0.94806 0.88755 1.01261 1.61807 1.07777 1.14243 1.40596 1.20082 0.94729 0.92693 0.88573 1.21239 1.03512 1.31352 0.95756 0.94124 1.25729 0.95124 0.95493 1.02768 1.70056 1.15802 1.38982 1.34630 0.85901 0.78293 0.79436 0.80384 1.19433 1.21184 1.17949 1.22446 0.88803 1.00031 0.96274 1.21432 0.95979 0.88923 0.93555 0.93711 1.21408 1.01496 0.96752 0.94344 1.21556 1.00453 0.97487 0.95831 1.21548 1.00836 0.93971 0.98608 1.22155 0.97503 0.99765 0.87612 1.62355 1.57722 1.01386 1.02448 1.21521 0.88333 0.96838 0.98125 1.20686 0.97436 0.97392 0.96771 1.21379 0.95304 0.99146 0.99046 1.21378 0.93842 0.99882 0.99825 1.21431 1.00835 0.96448 0.95865 1.21447 0.94665 0.99152 0.99109 1.21270 0.94302 0.98951 0.98707 0.94518 0.92126 0.95484 0.85479 0.97445 0.99330 0.96937 0.92920 0.94072 0.92205 0.93340 0.92148 0.92215 0.92048 0.90049 0.92416 0.94453 0.89602 0.88510 0.90473 0.86820 0.85249 0.84333 0.84058 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.65 71.98 0.62 -4.59 16 2 C 0.05 1.93 4.07 86.30 0.35 2.28 16 3 N -0.52 -21.06 3.46 -900.80 -3.12 -24.18 16 4 C 0.17 8.03 3.58 85.56 0.31 8.34 16 5 C -0.48 -27.75 7.75 25.60 0.20 -27.55 16 6 H 0.04 2.65 7.35 -2.91 -0.02 2.63 16 7 C 0.00 0.28 5.47 84.65 0.46 0.74 16 8 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 9 Si 0.93 45.18 27.60 68.60 1.89 47.07 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 12 H -0.26 -11.66 6.37 99.48 0.63 -11.02 16 13 C 0.05 1.74 4.10 86.30 0.35 2.09 16 14 C 0.11 3.06 1.57 44.94 0.07 3.13 16 15 H 0.05 1.22 6.44 -2.39 -0.02 1.20 16 16 C -0.10 -3.11 5.19 30.65 0.16 -2.95 16 17 C -0.12 -2.76 6.00 30.67 0.18 -2.57 16 18 C -0.11 -2.35 6.09 30.65 0.19 -2.16 16 19 C 0.06 1.14 4.80 86.32 0.41 1.55 16 20 N -0.52 -12.57 2.61 -875.66 -2.29 -14.86 16 21 C 0.08 1.73 3.95 85.56 0.34 2.07 16 22 C -0.12 -2.50 4.05 -19.87 -0.08 -2.58 16 23 C -0.13 -2.87 7.88 22.27 0.18 -2.70 16 24 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 27 C -0.11 -1.96 8.14 22.27 0.18 -1.78 16 28 H 0.04 1.69 7.37 -2.39 -0.02 1.68 16 29 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.03 1.25 6.85 -2.38 -0.02 1.24 16 31 H 0.13 4.09 4.30 -2.39 -0.01 4.08 16 32 H 0.01 0.27 7.41 -2.39 -0.02 0.25 16 33 H -0.01 -0.54 6.24 -2.39 -0.01 -0.56 16 34 H 0.01 0.60 7.04 -2.39 -0.02 0.59 16 35 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.04 1.26 3.85 -2.39 -0.01 1.25 16 37 H 0.06 2.05 7.43 -2.39 -0.02 2.03 16 38 H 0.05 1.53 8.14 -2.38 -0.02 1.52 16 39 H 0.06 2.28 7.50 -2.39 -0.02 2.27 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.04 0.74 6.56 -2.38 -0.02 0.72 16 45 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 46 H 0.10 1.81 8.03 -2.38 -0.02 1.79 16 47 H 0.08 1.97 4.10 -2.39 -0.01 1.96 16 48 H 0.11 2.71 5.35 -2.91 -0.02 2.70 16 49 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 50 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 51 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 52 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -66.67 372.91 2.19 -64.48 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.81 Total: 20.29 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 4.60 Total: -32.55 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -5.11 Total: -99.29 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.89 Total: 47.07 kcal Total: -66.67 2.19 -64.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208588414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.309 kcal (2) G-P(sol) polarization free energy of solvation -66.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds