Wall clock time and date at job start Tue Mar 31 2020 11:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.53005 * 109.47159 * 300.00546 * 4 2 1 6 6 N 1.46905 * 109.46858 * 179.97438 * 5 4 2 7 7 C 1.46957 * 110.99748 * 293.79630 * 6 5 4 8 8 C 1.53054 * 109.36072 * 176.81472 * 7 6 5 9 9 N 1.46961 * 109.36404 * 58.40294 * 8 7 6 10 10 C 1.46902 * 110.99899 * 176.81525 * 9 8 7 11 11 C 1.50702 * 109.46472 * 293.79540 * 10 9 8 12 12 H 1.07998 * 120.00397 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99676 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00292 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00080 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47145 * 59.99546 * 15 13 11 17 17 H 1.48494 * 109.47361 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46700 * 299.99882 * 15 13 11 19 19 C 1.46957 * 110.87882 * 300.67830 * 9 8 7 20 20 C 1.46954 * 110.99771 * 169.99733 * 6 5 4 21 21 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 22 22 C 1.38234 * 120.00333 * 239.72550 * 21 2 1 23 23 C 1.38233 * 120.00099 * 179.76337 * 22 21 2 24 24 C 1.38230 * 119.99884 * 0.50816 * 23 22 21 25 25 C 1.38235 * 120.00304 * 359.75152 * 24 23 22 26 26 C 1.38239 * 120.00038 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 34 34 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.46935 * 299.99411 * 5 4 2 36 36 H 1.08992 * 109.47061 * 59.99386 * 5 4 2 37 37 H 1.09003 * 109.48707 * 296.77419 * 7 6 5 38 38 H 1.08999 * 109.48907 * 56.84826 * 7 6 5 39 39 H 1.08997 * 109.49103 * 298.43682 * 8 7 6 40 40 H 1.09002 * 109.48845 * 178.36778 * 8 7 6 41 41 H 1.08991 * 109.47370 * 53.79190 * 10 9 8 42 42 H 1.08997 * 109.47000 * 173.79979 * 10 9 8 43 43 H 0.97003 * 120.00430 * 180.02562 * 14 13 11 44 44 H 1.09009 * 109.48977 * 299.35575 * 19 9 8 45 45 H 1.08995 * 109.50577 * 179.30293 * 19 9 8 46 46 H 1.09002 * 109.48899 * 303.15497 * 20 6 5 47 47 H 1.09004 * 109.48962 * 63.21606 * 20 6 5 48 48 H 1.07996 * 119.99704 * 0.02562 * 22 21 2 49 49 H 1.08005 * 120.00080 * 180.23531 * 23 22 21 50 50 H 1.08002 * 120.00258 * 179.72367 * 24 23 22 51 51 H 1.07996 * 120.00292 * 179.97438 * 25 24 23 52 52 H 1.07994 * 120.00626 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5299 0.0002 2.4985 6 7 2.0192 -0.6927 3.6980 7 6 1.4303 -2.0346 3.8080 8 6 2.0241 -2.7512 5.0231 9 7 1.7572 -1.9611 6.2333 10 6 2.2465 -2.6539 7.4327 11 6 1.4466 -3.9130 7.6469 12 1 0.6538 -4.1724 6.9609 13 6 1.7262 -4.7333 8.7193 14 7 2.6905 -4.4167 9.5555 15 14 0.7352 -6.2945 8.9844 16 1 0.8860 -7.1829 7.8041 17 1 1.2288 -6.9941 10.1976 18 1 -0.6976 -5.9469 9.1625 19 6 2.3460 -0.6192 6.1231 20 6 1.7523 0.0973 4.9081 21 6 2.0324 -0.7105 -1.2304 22 6 2.8318 -1.8310 -1.1035 23 6 3.2886 -2.4855 -2.2321 24 6 2.9547 -2.0134 -3.4876 25 6 2.1596 -0.8897 -3.6146 26 6 1.6981 -0.2384 -2.4860 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 -1.7488 1.2493 34 1 3.1300 -0.7207 1.2495 35 1 1.8933 1.0278 2.4985 36 1 0.4400 0.0001 2.4984 37 1 0.3503 -1.9490 3.9283 38 1 1.6522 -2.6042 2.9056 39 1 3.1004 -2.8609 4.8906 40 1 1.5675 -3.7358 5.1236 41 1 3.2978 -2.9093 7.3013 42 1 2.1364 -2.0018 8.2992 43 1 2.8875 -4.9939 10.3098 44 1 3.4261 -0.7047 6.0030 45 1 2.1245 -0.0494 7.0255 46 1 2.2090 1.0820 4.8076 47 1 0.6760 0.2071 5.0407 48 1 3.0960 -2.1976 -0.1226 49 1 3.9101 -3.3633 -2.1330 50 1 3.3152 -2.5221 -4.3694 51 1 1.8991 -0.5205 -4.5955 52 1 1.0774 0.6398 -2.5850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208664897.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:01 Heat of formation + Delta-G solvation = 23.392335 kcal Electronic energy + Delta-G solvation = -26658.826559 eV Core-core repulsion = 23236.472963 eV Total energy + Delta-G solvation = -3422.353596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22038 -38.75255 -36.95255 -34.79591 -32.49684 -31.28942 -30.56871 -30.34181 -29.08399 -27.49480 -27.24190 -25.14689 -23.63498 -23.07610 -22.58749 -21.64483 -21.12041 -19.13692 -18.93445 -17.30955 -16.29518 -15.96720 -15.29825 -15.20248 -15.08237 -14.58941 -14.38314 -14.26662 -14.13137 -13.94920 -13.71104 -13.58495 -13.52513 -13.10671 -12.94058 -12.50866 -12.39384 -12.11605 -11.92833 -11.79739 -11.59568 -11.46552 -11.37757 -11.15657 -10.88947 -10.83057 -10.71413 -10.64241 -10.56820 -10.50101 -10.22115 -10.21120 -9.66254 -9.16545 -9.09500 -8.87252 -8.41771 -8.05934 -7.19320 -6.00758 -4.02218 1.18235 1.22125 3.34369 3.38325 3.41218 3.60288 4.03816 4.37723 4.43762 4.57931 4.77523 4.80530 4.89366 4.92483 4.98567 5.08461 5.12928 5.28388 5.30580 5.34506 5.37612 5.42339 5.46675 5.55772 5.61475 5.64144 5.67877 5.76844 5.80055 5.85637 5.87857 5.88587 5.90837 5.96761 5.97074 6.07845 6.16422 6.21438 6.28100 6.31893 6.35337 6.46735 6.50107 6.64173 6.72575 6.82684 7.23688 7.32108 7.38894 7.42550 7.82006 8.11963 8.24176 8.58172 9.05072 9.61817 11.10073 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002490 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.720796 B =11240.472039 C =12113.525134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C -0.139 4.139 4 C -0.107 4.107 5 C 0.053 3.947 6 N -0.540 5.540 7 C 0.057 3.943 8 C 0.068 3.932 9 N -0.539 5.539 10 C 0.194 3.806 11 C -0.507 4.507 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.056 3.944 20 C 0.062 3.938 21 C -0.065 4.065 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.117 4.117 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.085 0.915 41 H -0.009 1.009 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.037 0.963 48 H 0.129 0.871 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 10.678 -24.787 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.196 4.196 4 C -0.144 4.144 5 C -0.074 4.074 6 N -0.265 5.265 7 C -0.071 4.071 8 C -0.061 4.061 9 N -0.264 5.264 10 C 0.069 3.931 11 C -0.546 4.546 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.066 4.066 21 C -0.065 4.065 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.140 4.140 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.009 0.991 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.055 0.945 48 H 0.147 0.853 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.047 10.615 -24.593 26.806 hybrid contribution -0.419 -0.911 0.216 1.026 sum -1.467 9.704 -24.377 26.278 Atomic orbital electron populations 1.21950 0.93740 1.02199 1.01887 1.19499 0.95651 0.95203 0.92128 1.21935 1.01374 0.94491 1.01830 1.21729 1.01501 0.99231 0.91986 1.22216 0.97402 0.97929 0.89901 1.62161 1.58951 1.03263 1.02100 1.22275 0.96942 0.89377 0.98520 1.21987 0.98096 0.97402 0.88632 1.62282 1.58651 1.01618 1.03870 1.19690 0.93720 0.93524 0.86183 1.21119 1.17321 1.05680 1.10472 0.92016 1.24991 0.95415 0.98285 0.95929 1.69949 1.30439 1.38311 1.15132 0.86567 0.80382 0.83044 0.77445 1.20268 1.21366 1.20209 1.22058 0.96587 0.92280 0.96336 1.22130 0.98893 0.95923 0.89646 1.19855 0.96956 0.95425 0.94245 1.21300 0.97675 0.95502 0.99210 1.21193 0.99941 0.99860 0.92626 1.21130 0.99100 0.97051 0.97431 1.21105 0.98361 0.96148 0.98364 1.20970 1.00473 1.00072 0.92021 0.92460 0.92685 0.91871 0.91892 0.92372 0.92730 0.91408 0.90794 0.90962 0.94785 0.94524 0.91138 0.95403 0.89711 0.99100 0.95276 0.92886 0.95196 0.91126 0.91360 0.94470 0.85304 0.86153 0.86426 0.86393 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 7.93 37.16 0.29 -0.90 16 2 C -0.02 -0.21 0.63 -155.66 -0.10 -0.31 16 3 C -0.14 -1.12 7.93 37.16 0.29 -0.83 16 4 C -0.11 -1.10 2.86 -26.73 -0.08 -1.18 16 5 C 0.05 0.61 4.25 -3.82 -0.02 0.60 16 6 N -0.54 -7.95 4.71 -234.46 -1.10 -9.05 16 7 C 0.06 0.91 5.41 -3.77 -0.02 0.89 16 8 C 0.07 1.35 5.43 -3.76 -0.02 1.33 16 9 N -0.54 -11.93 4.70 -235.91 -1.11 -13.04 16 10 C 0.19 5.15 4.72 -4.97 -0.02 5.12 16 11 C -0.51 -14.38 8.47 -34.44 -0.29 -14.67 16 12 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 15 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 20 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 21 C -0.06 -0.62 4.76 -104.62 -0.50 -1.11 16 22 C -0.12 -1.18 8.98 -39.58 -0.36 -1.54 16 23 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 24 C -0.13 -1.10 10.05 -39.59 -0.40 -1.49 16 25 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.12 -1.03 8.71 -39.58 -0.34 -1.37 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.41 7.39 -51.93 -0.38 0.03 16 29 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 30 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.39 7.39 -51.93 -0.38 0.01 16 33 H 0.07 0.74 5.88 -51.93 -0.31 0.44 16 34 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16 35 H 0.07 0.77 6.31 -51.93 -0.33 0.44 16 36 H 0.03 0.40 6.41 -51.93 -0.33 0.06 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.81 6.79 -51.93 -0.35 1.45 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 46 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.13 1.25 5.90 -52.49 -0.31 0.94 16 49 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 50 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 52 H 0.12 0.86 7.10 -52.49 -0.37 0.49 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -30.40 391.08 -12.24 -42.63 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -9.15 Total: -2.07 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.49 Total: -14.91 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -1.48 Total: -48.30 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.40 -12.24 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208664897.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.027 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds