Wall clock time and date at job start Tue Mar 31 2020 11:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47219 * 2 1 4 4 C 1.46899 * 110.99835 * 199.67753 * 3 2 1 5 5 C 1.50697 * 109.47358 * 66.04615 * 4 3 2 6 6 H 1.08000 * 120.00232 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99929 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00143 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99751 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47363 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47318 * 120.00372 * 9 7 5 12 12 H 1.48502 * 109.47303 * 240.00108 * 9 7 5 13 13 C 1.46897 * 111.00105 * 75.72512 * 3 2 1 14 14 C 1.52994 * 109.47142 * 199.72672 * 13 3 2 15 15 H 1.09005 * 109.50714 * 304.40128 * 14 13 3 16 16 C 1.53119 * 109.50451 * 64.48127 * 14 13 3 17 17 C 1.53126 * 109.16148 * 177.63377 * 16 14 13 18 18 C 1.53031 * 109.27779 * 302.34731 * 17 16 14 19 19 N 1.46843 * 109.52581 * 59.17833 * 18 17 16 20 20 C 1.46907 * 111.00376 * 174.15826 * 19 18 17 21 21 C 1.50695 * 109.46641 * 66.04543 * 20 19 18 22 22 C 1.38239 * 120.00087 * 270.20716 * 21 20 19 23 23 C 1.38237 * 120.00198 * 180.25771 * 22 21 20 24 24 C 1.38242 * 119.99557 * 359.52047 * 23 22 21 25 25 C 1.38230 * 120.00117 * 0.26828 * 24 23 22 26 26 C 1.38234 * 120.00158 * 359.96183 * 25 24 23 27 27 C 1.46844 * 111.19910 * 298.25370 * 19 18 17 28 28 H 1.08998 * 109.46882 * 54.73614 * 1 2 3 29 29 H 1.08996 * 109.47069 * 174.74153 * 1 2 3 30 30 H 1.09003 * 109.46755 * 294.74110 * 1 2 3 31 31 H 1.08997 * 109.47511 * 239.99883 * 2 1 3 32 32 H 1.08997 * 109.47451 * 119.99858 * 2 1 3 33 33 H 1.09006 * 109.47206 * 186.04502 * 4 3 2 34 34 H 1.08997 * 109.47514 * 306.04192 * 4 3 2 35 35 H 0.97009 * 119.99853 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47288 * 79.72423 * 13 3 2 37 37 H 1.09010 * 109.46999 * 319.72318 * 13 3 2 38 38 H 1.09001 * 109.52350 * 57.72993 * 16 14 13 39 39 H 1.08999 * 109.57553 * 297.57238 * 16 14 13 40 40 H 1.08995 * 109.50170 * 182.40363 * 17 16 14 41 41 H 1.09002 * 109.53031 * 62.30702 * 17 16 14 42 42 H 1.09004 * 109.46567 * 299.15984 * 18 17 16 43 43 H 1.09006 * 109.45219 * 179.19083 * 18 17 16 44 44 H 1.08999 * 109.46968 * 306.04711 * 20 19 18 45 45 H 1.08997 * 109.47293 * 186.04916 * 20 19 18 46 46 H 1.08000 * 120.00268 * 0.05241 * 22 21 20 47 47 H 1.07992 * 120.00476 * 179.78732 * 23 22 21 48 48 H 1.08004 * 119.99555 * 180.25716 * 24 23 22 49 49 H 1.08001 * 120.00198 * 179.97438 * 25 24 23 50 50 H 1.08002 * 120.00303 * 179.97438 * 26 25 24 51 51 H 1.09000 * 109.46201 * 181.75227 * 27 19 18 52 52 H 1.08995 * 109.46510 * 301.73069 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4126 1.4508 -0.4618 5 6 3.4808 1.0465 -1.9119 6 1 2.5795 0.7680 -2.4378 7 6 4.6938 1.0321 -2.5673 8 7 5.7913 1.3707 -1.9268 9 14 4.7783 0.5301 -4.3646 10 1 3.4150 0.1975 -4.8503 11 1 5.3289 1.6522 -5.1666 12 1 5.6582 -0.6577 -4.5060 13 6 1.8764 1.9941 1.3290 14 6 1.9174 3.5179 1.1988 15 1 2.8348 3.8152 0.6907 16 6 0.7077 3.9947 0.3903 17 6 0.7245 5.5240 0.3151 18 6 0.7179 6.0997 1.7329 19 7 1.8949 5.6148 2.4650 20 6 1.9959 6.2555 3.7831 21 6 0.8359 5.8227 4.6422 22 6 -0.3405 6.5486 4.6318 23 6 -1.4028 6.1546 5.4238 24 6 -1.2920 5.0291 6.2188 25 6 -0.1171 4.3009 6.2260 26 6 0.9468 4.6975 5.4375 27 6 1.8762 4.1519 2.5912 28 1 -0.3633 0.5933 -0.8391 29 1 -0.3633 -1.0233 -0.0942 30 1 -0.3633 0.4301 0.9334 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 3.7845 2.4695 -0.3508 34 1 4.0252 0.7737 0.1334 35 1 6.6448 1.3602 -2.3878 36 1 2.6924 1.6621 1.9708 37 1 0.9245 1.6923 1.7663 38 1 -0.2095 3.6641 0.8777 39 1 0.7549 3.5799 -0.6166 40 1 -0.1573 5.8716 -0.2230 41 1 1.6228 5.8533 -0.2072 42 1 -0.1876 5.7819 2.2498 43 1 0.7444 7.1883 1.6829 44 1 1.9750 7.3387 3.6631 45 1 2.9309 5.9608 4.2597 46 1 -0.4287 7.4253 4.0073 47 1 -2.3207 6.7236 5.4183 48 1 -2.1234 4.7190 6.8345 49 1 -0.0304 3.4218 6.8474 50 1 1.8649 4.1288 5.4434 51 1 2.7439 3.8257 3.1645 52 1 0.9652 3.8432 3.1039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208934671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:08 Heat of formation + Delta-G solvation = 18.316145 kcal Electronic energy + Delta-G solvation = -27415.776001 eV Core-core repulsion = 23993.202285 eV Total energy + Delta-G solvation = -3422.573716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12297 -38.45176 -36.76761 -34.00587 -32.58180 -31.63403 -31.03361 -30.59372 -29.63254 -26.98531 -26.34190 -24.57073 -23.08989 -22.67039 -22.37362 -21.57245 -21.05251 -19.60308 -19.07360 -16.91088 -16.37691 -15.90591 -15.48597 -15.33470 -14.80471 -14.76361 -14.35732 -14.21498 -13.96091 -13.81297 -13.59144 -13.53609 -13.08880 -12.97721 -12.55290 -12.35314 -12.25398 -12.06915 -11.76615 -11.60442 -11.53781 -11.38053 -11.10810 -11.01321 -10.91124 -10.76924 -10.61796 -10.51611 -10.25354 -10.12953 -9.88700 -9.83808 -9.55356 -9.07835 -9.06526 -8.91731 -8.38369 -8.22052 -7.13453 -5.97687 -3.98173 1.15760 1.22447 3.33503 3.41102 3.45771 3.57506 4.06476 4.46771 4.64345 4.65018 4.82012 4.91141 4.95626 5.06097 5.18108 5.23438 5.29431 5.34330 5.38110 5.47685 5.58129 5.66347 5.69576 5.73068 5.78506 5.84867 5.85410 5.86292 5.96911 5.98878 6.05073 6.07420 6.16789 6.23646 6.27252 6.32085 6.33584 6.40511 6.44576 6.53550 6.55406 6.76538 6.82459 6.85986 6.90569 6.97508 7.18232 7.21219 7.40902 7.44226 7.87679 8.19314 8.30886 8.63760 9.10256 9.65679 11.13148 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.003097 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.225668 B = 9038.365214 C = 9523.607426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 N -0.532 5.532 4 C 0.193 3.807 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.063 3.937 14 C -0.076 4.076 15 H 0.084 0.916 16 C -0.101 4.101 17 C -0.119 4.119 18 C 0.055 3.945 19 N -0.523 5.523 20 C 0.091 3.909 21 C -0.117 4.117 22 C -0.110 4.110 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.106 4.106 27 C 0.061 3.939 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.015 0.985 33 H 0.033 0.967 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.022 0.978 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.068 0.932 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 9.113 15.078 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 N -0.257 5.257 4 C 0.067 3.933 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.066 4.066 14 C -0.095 4.095 15 H 0.103 0.897 16 C -0.139 4.139 17 C -0.157 4.157 18 C -0.073 4.073 19 N -0.244 5.244 20 C -0.037 4.037 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.139 4.139 26 C -0.125 4.125 27 C -0.067 4.067 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.004 0.996 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.086 0.914 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.803 9.530 14.413 21.505 hybrid contribution -0.054 -0.978 0.196 0.999 sum -12.857 8.552 14.609 21.257 Atomic orbital electron populations 1.21782 0.96811 1.00093 1.01254 1.21947 0.94051 0.90564 1.00672 1.62071 1.25198 1.16338 1.22044 1.19747 0.81531 0.96860 0.95116 1.21208 0.93180 1.44291 0.95557 0.91899 1.24979 0.95720 0.95718 0.98205 1.69974 0.98384 1.48960 1.36445 0.86500 0.78004 0.78049 0.85212 1.19705 1.21072 1.21233 1.21989 0.99028 0.94007 0.91594 1.21116 1.00227 0.94108 0.94038 0.89736 1.21441 0.96691 0.93729 1.02000 1.21624 1.01925 0.96849 0.95255 1.22146 0.91159 0.98996 0.94984 1.62297 1.40329 1.06686 1.15119 1.21294 0.95216 0.99561 0.87648 1.20759 0.97205 0.96067 0.97836 1.21071 0.93116 0.99772 0.98882 1.21134 0.98679 0.97225 0.97059 1.21138 0.97775 0.95725 0.99515 1.21161 0.93587 0.99805 0.99366 1.21130 0.99018 0.96358 0.96008 1.22167 1.00150 0.86435 0.97922 0.92198 0.93629 0.94031 0.89743 0.96714 0.94863 0.99550 0.93086 0.96003 0.92649 0.93641 0.89939 0.92156 0.91080 0.94770 0.91544 0.90047 0.89841 0.86304 0.86296 0.86343 0.86178 0.86078 0.91372 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.96 37.16 0.37 -1.90 16 2 C 0.06 1.10 5.51 -3.82 -0.02 1.07 16 3 N -0.53 -11.27 3.84 -236.08 -0.91 -12.18 16 4 C 0.19 4.99 4.55 -4.98 -0.02 4.96 16 5 C -0.50 -14.08 8.23 -34.44 -0.28 -14.36 16 6 H 0.06 1.75 7.31 -52.49 -0.38 1.37 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.06 1.14 4.21 -3.83 -0.02 1.13 16 14 C -0.08 -1.27 2.40 -90.54 -0.22 -1.49 16 15 H 0.08 1.70 6.68 -51.93 -0.35 1.35 16 16 C -0.10 -1.60 5.14 -26.60 -0.14 -1.73 16 17 C -0.12 -1.63 6.09 -26.65 -0.16 -1.80 16 18 C 0.05 0.68 4.81 -3.84 -0.02 0.66 16 19 N -0.52 -6.85 4.86 -236.11 -1.15 -8.00 16 20 C 0.09 0.98 5.56 -4.97 -0.03 0.95 16 21 C -0.12 -1.24 4.04 -104.62 -0.42 -1.67 16 22 C -0.11 -1.09 8.10 -39.58 -0.32 -1.41 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 26 C -0.11 -1.12 8.02 -39.58 -0.32 -1.44 16 27 C 0.06 0.87 3.82 -3.83 -0.01 0.86 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.62 6.89 -51.93 -0.36 0.26 16 31 H 0.08 1.83 6.58 -51.93 -0.34 1.48 16 32 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 33 H 0.03 0.92 6.58 -51.93 -0.34 0.58 16 34 H -0.01 -0.37 8.12 -51.93 -0.42 -0.80 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 37 H 0.06 0.92 6.56 -51.92 -0.34 0.58 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.50 7.82 -51.93 -0.41 1.10 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.03 0.43 6.54 -51.93 -0.34 0.09 16 43 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 44 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 45 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 46 H 0.12 1.03 8.02 -52.49 -0.42 0.61 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 49 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 50 H 0.12 1.21 8.02 -52.49 -0.42 0.78 16 51 H 0.07 0.97 8.12 -51.93 -0.42 0.54 16 52 H 0.03 0.49 6.46 -51.93 -0.34 0.16 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -29.70 395.93 -12.75 -42.46 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -9.48 Total: 0.44 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.90 Total: -19.36 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -1.32 Total: -46.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.70 -12.75 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208934671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.776 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds