Wall clock time and date at job start Tue Mar 31 2020 11:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47219 * 2 1 4 4 C 1.46899 * 110.99835 * 199.67753 * 3 2 1 5 5 C 1.50697 * 109.47358 * 66.04615 * 4 3 2 6 6 H 1.08000 * 120.00232 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99929 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00143 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99751 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47363 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47318 * 120.00372 * 9 7 5 12 12 H 1.48502 * 109.47303 * 240.00108 * 9 7 5 13 13 C 1.46897 * 111.00105 * 75.72512 * 3 2 1 14 14 C 1.52994 * 109.47142 * 199.72672 * 13 3 2 15 15 H 1.09005 * 109.50714 * 304.40128 * 14 13 3 16 16 C 1.53119 * 109.50451 * 64.48127 * 14 13 3 17 17 C 1.53126 * 109.16148 * 177.63377 * 16 14 13 18 18 C 1.53031 * 109.27779 * 302.34731 * 17 16 14 19 19 N 1.46843 * 109.52581 * 59.17833 * 18 17 16 20 20 C 1.46907 * 111.00376 * 174.15826 * 19 18 17 21 21 C 1.50695 * 109.46641 * 66.04543 * 20 19 18 22 22 C 1.38239 * 120.00087 * 270.20716 * 21 20 19 23 23 C 1.38237 * 120.00198 * 180.25771 * 22 21 20 24 24 C 1.38242 * 119.99557 * 359.52047 * 23 22 21 25 25 C 1.38230 * 120.00117 * 0.26828 * 24 23 22 26 26 C 1.38234 * 120.00158 * 359.96183 * 25 24 23 27 27 C 1.46844 * 111.19910 * 298.25370 * 19 18 17 28 28 H 1.08998 * 109.46882 * 54.73614 * 1 2 3 29 29 H 1.08996 * 109.47069 * 174.74153 * 1 2 3 30 30 H 1.09003 * 109.46755 * 294.74110 * 1 2 3 31 31 H 1.08997 * 109.47511 * 239.99883 * 2 1 3 32 32 H 1.08997 * 109.47451 * 119.99858 * 2 1 3 33 33 H 1.09006 * 109.47206 * 186.04502 * 4 3 2 34 34 H 1.08997 * 109.47514 * 306.04192 * 4 3 2 35 35 H 0.97009 * 119.99853 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47288 * 79.72423 * 13 3 2 37 37 H 1.09010 * 109.46999 * 319.72318 * 13 3 2 38 38 H 1.09001 * 109.52350 * 57.72993 * 16 14 13 39 39 H 1.08999 * 109.57553 * 297.57238 * 16 14 13 40 40 H 1.08995 * 109.50170 * 182.40363 * 17 16 14 41 41 H 1.09002 * 109.53031 * 62.30702 * 17 16 14 42 42 H 1.09004 * 109.46567 * 299.15984 * 18 17 16 43 43 H 1.09006 * 109.45219 * 179.19083 * 18 17 16 44 44 H 1.08999 * 109.46968 * 306.04711 * 20 19 18 45 45 H 1.08997 * 109.47293 * 186.04916 * 20 19 18 46 46 H 1.08000 * 120.00268 * 0.05241 * 22 21 20 47 47 H 1.07992 * 120.00476 * 179.78732 * 23 22 21 48 48 H 1.08004 * 119.99555 * 180.25716 * 24 23 22 49 49 H 1.08001 * 120.00198 * 179.97438 * 25 24 23 50 50 H 1.08002 * 120.00303 * 179.97438 * 26 25 24 51 51 H 1.09000 * 109.46201 * 181.75227 * 27 19 18 52 52 H 1.08995 * 109.46510 * 301.73069 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4126 1.4508 -0.4618 5 6 3.4808 1.0465 -1.9119 6 1 2.5795 0.7680 -2.4378 7 6 4.6938 1.0321 -2.5673 8 7 5.7913 1.3707 -1.9268 9 14 4.7783 0.5301 -4.3646 10 1 3.4150 0.1975 -4.8503 11 1 5.3289 1.6522 -5.1666 12 1 5.6582 -0.6577 -4.5060 13 6 1.8764 1.9941 1.3290 14 6 1.9174 3.5179 1.1988 15 1 2.8348 3.8152 0.6907 16 6 0.7077 3.9947 0.3903 17 6 0.7245 5.5240 0.3151 18 6 0.7179 6.0997 1.7329 19 7 1.8949 5.6148 2.4650 20 6 1.9959 6.2555 3.7831 21 6 0.8359 5.8227 4.6422 22 6 -0.3405 6.5486 4.6318 23 6 -1.4028 6.1546 5.4238 24 6 -1.2920 5.0291 6.2188 25 6 -0.1171 4.3009 6.2260 26 6 0.9468 4.6975 5.4375 27 6 1.8762 4.1519 2.5912 28 1 -0.3633 0.5933 -0.8391 29 1 -0.3633 -1.0233 -0.0942 30 1 -0.3633 0.4301 0.9334 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 3.7845 2.4695 -0.3508 34 1 4.0252 0.7737 0.1334 35 1 6.6448 1.3602 -2.3878 36 1 2.6924 1.6621 1.9708 37 1 0.9245 1.6923 1.7663 38 1 -0.2095 3.6641 0.8777 39 1 0.7549 3.5799 -0.6166 40 1 -0.1573 5.8716 -0.2230 41 1 1.6228 5.8533 -0.2072 42 1 -0.1876 5.7819 2.2498 43 1 0.7444 7.1883 1.6829 44 1 1.9750 7.3387 3.6631 45 1 2.9309 5.9608 4.2597 46 1 -0.4287 7.4253 4.0073 47 1 -2.3207 6.7236 5.4183 48 1 -2.1234 4.7190 6.8345 49 1 -0.0304 3.4218 6.8474 50 1 1.8649 4.1288 5.4434 51 1 2.7439 3.8257 3.1645 52 1 0.9652 3.8432 3.1039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208934671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:07 Heat of formation + Delta-G solvation = 2.299686 kcal Electronic energy + Delta-G solvation = -27416.470526 eV Core-core repulsion = 23993.202285 eV Total energy + Delta-G solvation = -3423.268242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04658 -39.56470 -38.23863 -35.22422 -34.62557 -32.82028 -31.82128 -31.48504 -31.26626 -28.79833 -27.30109 -26.12078 -24.31491 -24.08603 -23.52846 -22.65792 -22.09047 -21.03316 -20.43365 -18.54347 -17.63185 -17.03272 -16.68925 -16.49363 -16.16327 -15.95828 -15.67711 -15.48843 -15.42284 -15.14393 -14.79333 -14.43194 -14.28415 -14.22143 -13.97601 -13.82884 -13.50059 -13.22950 -13.05544 -13.00297 -12.76303 -12.68972 -12.54143 -12.38242 -12.33748 -12.12710 -12.06786 -11.85750 -11.76141 -11.68201 -11.29673 -11.26626 -11.13309 -11.01325 -10.58644 -9.78884 -9.67997 -9.21834 -8.93594 -8.18235 -6.27457 0.42912 0.50756 1.40170 1.41121 1.54518 2.41075 2.79397 3.06564 3.14387 3.38933 3.85199 3.89400 3.90237 4.05441 4.08960 4.16249 4.24008 4.28981 4.29375 4.38621 4.49744 4.53386 4.59294 4.61069 4.63281 4.66467 4.74321 4.77543 4.78693 4.82906 4.92336 4.92960 5.02836 5.09445 5.11889 5.13524 5.16535 5.19623 5.24123 5.30019 5.37887 5.47759 5.55771 5.58022 5.61348 5.63159 5.67963 5.69399 6.10678 6.12743 6.15506 6.20783 6.42741 6.71313 6.89890 7.41856 8.93125 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.003097 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.225668 B = 9038.365214 C = 9523.607426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.052 3.948 3 N -0.533 5.533 4 C 0.212 3.788 5 C -0.517 4.517 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.066 3.934 14 C -0.070 4.070 15 H 0.042 0.958 16 C -0.094 4.094 17 C -0.116 4.116 18 C 0.061 3.939 19 N -0.539 5.539 20 C 0.094 3.906 21 C -0.127 4.127 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.131 4.131 26 C -0.122 4.122 27 C 0.077 3.923 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.017 0.983 33 H 0.005 0.995 34 H -0.048 1.048 35 H 0.263 0.737 36 H 0.010 0.990 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.131 0.869 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.133 0.867 50 H 0.118 0.882 51 H 0.062 0.938 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.735 9.628 15.489 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.076 4.076 3 N -0.257 5.257 4 C 0.086 3.914 5 C -0.555 4.555 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.063 4.063 14 C -0.090 4.090 15 H 0.060 0.940 16 C -0.132 4.132 17 C -0.154 4.154 18 C -0.066 4.066 19 N -0.261 5.261 20 C -0.034 4.034 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.141 4.141 27 C -0.052 4.052 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.023 0.977 34 H -0.030 1.030 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.149 0.851 47 H 0.158 0.842 48 H 0.157 0.843 49 H 0.151 0.849 50 H 0.136 0.864 51 H 0.080 0.920 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.411 10.047 14.839 23.635 hybrid contribution 0.743 -1.138 0.147 1.366 sum -14.668 8.909 14.986 22.784 Atomic orbital electron populations 1.21665 0.93342 1.01794 1.01795 1.22018 0.96784 0.89190 0.99579 1.62048 1.21844 1.17776 1.24073 1.19335 0.83751 0.94044 0.94279 1.21482 0.93336 1.44262 0.96454 0.91973 1.25901 0.95242 0.95526 1.03062 1.70108 0.99041 1.49916 1.38508 0.85372 0.78431 0.77801 0.79251 1.18652 1.20518 1.20482 1.22056 0.99654 0.94769 0.89791 1.21007 0.98864 0.93401 0.95710 0.93987 1.21334 0.96432 0.95322 1.00066 1.21600 1.01903 0.95210 0.96660 1.22114 0.90962 0.99969 0.93561 1.62254 1.41132 1.05823 1.16867 1.21289 0.95497 1.00081 0.86496 1.20732 0.97410 0.96487 0.98245 1.21274 0.92938 1.00091 0.99202 1.21447 0.99297 0.97319 0.96510 1.21457 0.98121 0.95532 0.99503 1.21401 0.93643 1.00458 0.99402 1.21248 0.99422 0.96718 0.96725 1.21912 1.00183 0.87437 0.95640 0.92806 0.91140 0.92473 0.92280 0.96430 0.97730 1.02999 0.92833 0.97218 0.90182 0.92299 0.92859 0.90112 0.93098 0.94189 0.89586 0.88617 0.90093 0.85065 0.84220 0.84320 0.84907 0.86382 0.91965 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.96 71.98 0.72 -3.15 16 2 C 0.05 2.06 5.51 86.30 0.48 2.54 16 3 N -0.53 -23.37 3.84 -900.82 -3.46 -26.83 16 4 C 0.21 11.65 4.55 85.56 0.39 12.04 16 5 C -0.52 -29.91 8.23 25.60 0.21 -29.70 16 6 H 0.06 3.53 7.31 -2.91 -0.02 3.51 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 9 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 10 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.07 2.44 4.21 86.30 0.36 2.81 16 14 C -0.07 -2.45 2.40 -10.74 -0.03 -2.48 16 15 H 0.04 1.82 6.68 -2.38 -0.02 1.80 16 16 C -0.09 -2.96 5.14 30.68 0.16 -2.81 16 17 C -0.12 -3.11 6.09 30.65 0.19 -2.92 16 18 C 0.06 1.40 4.81 86.32 0.42 1.82 16 19 N -0.54 -13.80 4.86 -900.93 -4.38 -18.17 16 20 C 0.09 1.92 5.56 85.55 0.48 2.40 16 21 C -0.13 -2.50 4.04 -19.87 -0.08 -2.59 16 22 C -0.12 -2.02 8.10 22.27 0.18 -1.84 16 23 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 24 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 25 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 26 C -0.12 -2.46 8.02 22.27 0.18 -2.28 16 27 C 0.08 2.18 3.82 86.33 0.33 2.51 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.54 6.89 -2.39 -0.02 1.53 16 31 H 0.06 2.61 6.58 -2.39 -0.02 2.59 16 32 H 0.02 0.67 8.00 -2.39 -0.02 0.65 16 33 H 0.00 0.28 6.58 -2.38 -0.02 0.26 16 34 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 35 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 36 H 0.01 0.38 8.00 -2.39 -0.02 0.36 16 37 H 0.08 2.57 6.56 -2.38 -0.02 2.56 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.98 7.82 -2.39 -0.02 1.96 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 0.89 6.54 -2.38 -0.02 0.88 16 43 H 0.09 1.66 8.06 -2.38 -0.02 1.64 16 44 H 0.10 1.67 8.01 -2.39 -0.02 1.65 16 45 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 46 H 0.13 1.89 8.02 -2.91 -0.02 1.86 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 48 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 49 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 50 H 0.12 2.33 8.02 -2.91 -0.02 2.31 16 51 H 0.06 1.82 8.12 -2.39 -0.02 1.80 16 52 H 0.04 1.14 6.46 -2.39 -0.02 1.13 16 Total: -1.00 -66.42 395.93 0.43 -65.99 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.85 Total: 18.01 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 5.11 Total: -28.87 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -7.55 Total: -102.38 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.42 0.43 -65.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208934671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.289 kcal (2) G-P(sol) polarization free energy of solvation -66.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds