Wall clock time and date at job start Tue Mar 31 2020 11:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47063 * 2 1 4 4 N 1.46904 * 109.47331 * 174.85536 * 3 2 1 5 5 C 1.46896 * 110.99879 * 75.73164 * 4 3 2 6 6 C 1.50701 * 109.46887 * 199.54031 * 5 4 3 7 7 H 1.07995 * 120.00054 * 355.06983 * 6 5 4 8 8 C 1.37879 * 120.00026 * 175.07740 * 6 5 4 9 9 N 1.31522 * 119.99828 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47562 * 89.99610 * 10 8 6 12 12 H 1.48502 * 109.46916 * 209.99369 * 10 8 6 13 13 H 1.48499 * 109.47242 * 329.99226 * 10 8 6 14 14 C 1.46898 * 111.00143 * 199.68426 * 4 3 2 15 15 C 1.52995 * 109.47248 * 66.04356 * 14 4 3 16 16 H 1.09003 * 110.63116 * 308.10841 * 15 14 4 17 17 C 1.55144 * 110.70644 * 71.40186 * 15 14 4 18 18 C 1.54903 * 101.65540 * 154.03819 * 17 15 14 19 19 N 1.47852 * 104.79477 * 322.92820 * 18 17 15 20 20 C 1.46902 * 110.99865 * 146.36658 * 19 18 17 21 21 C 1.50697 * 109.47049 * 49.15620 * 20 19 18 22 22 C 1.38233 * 120.00086 * 269.72447 * 21 20 19 23 23 C 1.38239 * 119.99894 * 179.76580 * 22 21 20 24 24 C 1.38234 * 119.99752 * 0.51316 * 23 22 21 25 25 C 1.38232 * 120.00301 * 359.74461 * 24 23 22 26 26 C 1.38234 * 119.99700 * 90.00344 * 21 20 19 27 27 C 1.47445 * 108.56647 * 24.09830 * 19 18 17 28 28 H 1.09002 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47427 * 299.99874 * 1 2 3 30 30 H 1.08998 * 109.47097 * 60.00013 * 1 2 3 31 31 H 1.08999 * 109.46917 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47097 * 119.99986 * 2 1 3 33 33 H 1.09003 * 109.47118 * 54.85684 * 3 2 1 34 34 H 1.08999 * 109.47408 * 294.85947 * 3 2 1 35 35 H 1.08990 * 109.47770 * 79.53519 * 5 4 3 36 36 H 1.09008 * 109.46982 * 319.53240 * 5 4 3 37 37 H 0.97000 * 119.99744 * 180.02562 * 9 8 6 38 38 H 1.08994 * 109.47345 * 186.04489 * 14 4 3 39 39 H 1.09002 * 109.47469 * 306.04561 * 14 4 3 40 40 H 1.08998 * 110.98873 * 272.12688 * 17 15 14 41 41 H 1.08995 * 110.99086 * 35.94389 * 17 15 14 42 42 H 1.09001 * 110.37579 * 204.10475 * 18 17 15 43 43 H 1.08995 * 110.37726 * 81.75961 * 18 17 15 44 44 H 1.08993 * 109.47066 * 169.15937 * 20 19 18 45 45 H 1.09001 * 109.46678 * 289.15662 * 20 19 18 46 46 H 1.08002 * 120.00192 * 0.02562 * 22 21 20 47 47 H 1.08002 * 119.99844 * 180.22931 * 23 22 21 48 48 H 1.08002 * 119.99510 * 179.71948 * 24 23 22 49 49 H 1.08003 * 119.99884 * 179.97438 * 25 24 23 50 50 H 1.08000 * 120.00275 * 359.97438 * 26 21 20 51 51 H 1.08996 * 109.88527 * 239.60361 * 27 19 18 52 52 H 1.08991 * 109.88592 * 118.41396 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5037 1.4444 0.1242 5 6 4.1402 1.0675 -1.1449 6 6 5.5538 0.6155 -0.8832 7 1 5.9670 0.6838 0.1123 8 6 6.3197 0.1149 -1.9146 9 7 5.8164 0.0313 -3.1268 10 14 8.0716 -0.4460 -1.5900 11 1 8.0708 -1.8849 -1.2230 12 1 8.8896 -0.2478 -2.8135 13 1 8.6474 0.3488 -0.4755 14 6 3.9909 2.7495 0.5902 15 6 3.5039 2.9949 2.0197 16 1 2.4260 2.8486 2.0887 17 6 4.2514 2.0737 3.0195 18 6 4.1570 2.8931 4.3307 19 7 4.3007 4.3022 3.9065 20 6 3.4976 5.1921 4.7556 21 6 3.7655 4.8798 6.2053 22 6 2.9926 3.9424 6.8647 23 6 3.2415 3.6525 8.1932 24 6 4.2565 4.3076 8.8652 25 6 5.0259 5.2488 8.2073 26 6 4.7804 5.5349 6.8773 27 6 3.8939 4.4109 2.4935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6033 1.9822 0.8404 34 1 1.7538 1.9290 -0.9324 35 1 4.1518 1.9270 -1.8150 36 1 3.5785 0.2549 -1.6059 37 1 6.3551 -0.3212 -3.8524 38 1 5.0806 2.7587 0.5710 39 1 3.6094 3.5342 -0.0632 40 1 3.7436 1.1146 3.1211 41 1 5.2901 1.9341 2.7202 42 1 4.9638 2.6171 5.0096 43 1 3.1890 2.7370 4.8069 44 1 3.7659 6.2286 4.5516 45 1 2.4396 5.0417 4.5410 46 1 2.1970 3.4335 6.3408 47 1 2.6400 2.9174 8.7073 48 1 4.4480 4.0843 9.9044 49 1 5.8186 5.7610 8.7325 50 1 5.3817 6.2703 6.3633 51 1 4.7249 4.7860 1.8962 52 1 3.0384 5.0804 2.4045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208947350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:20 Heat of formation + Delta-G solvation = 23.168680 kcal Electronic energy + Delta-G solvation = -26668.419807 eV Core-core repulsion = 23246.056513 eV Total energy + Delta-G solvation = -3422.363294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94361 -38.60451 -36.86127 -33.62862 -33.00157 -32.00070 -31.09028 -30.20998 -29.20192 -27.17190 -26.10874 -24.93812 -23.31715 -22.79745 -21.73358 -21.46396 -20.52964 -20.21044 -19.23578 -16.95857 -16.43173 -16.08731 -15.68783 -15.26932 -15.05500 -14.86236 -14.38644 -14.15450 -13.93099 -13.71492 -13.56042 -13.37903 -13.18110 -12.95061 -12.63580 -12.31706 -12.19850 -12.10893 -11.82305 -11.66033 -11.50751 -11.30223 -11.11289 -10.99566 -10.89599 -10.85597 -10.62389 -10.52363 -10.50835 -10.30815 -10.15986 -9.99023 -9.51341 -9.15276 -9.06390 -8.94455 -8.37480 -8.21344 -7.18514 -5.98206 -3.98725 1.16431 1.24672 3.35159 3.41106 3.45220 3.56254 4.20170 4.45248 4.53842 4.67756 4.76156 4.83899 4.93261 4.96156 5.08995 5.16189 5.28986 5.33588 5.37499 5.45221 5.49083 5.50442 5.52095 5.58306 5.68131 5.73138 5.83907 5.84731 5.88767 5.93510 6.01961 6.07178 6.17229 6.23422 6.27185 6.29042 6.34140 6.35020 6.42236 6.45384 6.48311 6.61612 6.69518 6.80682 6.83034 6.86803 7.04859 7.11556 7.30209 7.38514 7.87308 8.17483 8.27720 8.60081 9.09173 9.65213 11.12464 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003020 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.364956 B = 9267.882866 C =10552.566713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.054 3.946 4 N -0.533 5.533 5 C 0.192 3.808 6 C -0.500 4.500 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.076 3.924 15 C -0.104 4.104 16 H 0.069 0.931 17 C -0.107 4.107 18 C 0.040 3.960 19 N -0.522 5.522 20 C 0.088 3.912 21 C -0.078 4.078 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.099 4.099 27 C 0.046 3.954 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.020 0.980 35 H -0.014 1.014 36 H 0.034 0.966 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.017 0.983 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.081 0.919 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 9.474 19.331 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.074 4.074 4 N -0.257 5.257 5 C 0.067 3.933 6 C -0.539 4.539 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.053 4.053 15 C -0.123 4.123 16 H 0.088 0.912 17 C -0.145 4.145 18 C -0.088 4.088 19 N -0.246 5.246 20 C -0.040 4.040 21 C -0.079 4.079 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.118 4.118 27 C -0.082 4.082 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.004 0.996 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.035 0.965 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.099 0.901 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.226 9.243 19.528 22.781 hybrid contribution -0.131 0.005 -0.678 0.691 sum -7.357 9.248 18.850 22.248 Atomic orbital electron populations 1.21746 0.96890 1.00973 1.00954 1.21469 0.93738 0.97349 1.02949 1.22090 0.90441 0.96286 0.98614 1.62113 1.03006 1.26819 1.33764 1.19758 0.94567 0.95018 0.83918 1.21166 0.96927 1.40693 0.95077 0.91923 1.24983 0.98523 0.96107 0.95076 1.69962 1.36993 1.46835 1.00322 0.86537 0.84505 0.79070 0.77548 1.20722 1.21434 1.19818 1.21923 1.01180 0.90117 0.92043 1.22447 0.99590 0.93772 0.96521 0.91233 1.22597 1.01776 0.97762 0.92394 1.23162 1.00014 0.87443 0.98134 1.63782 1.52474 1.06342 1.01990 1.21263 0.95559 0.98132 0.89025 1.19809 0.96071 0.96748 0.95239 1.21114 0.99752 0.97525 0.94705 1.21112 0.98236 0.99965 0.94680 1.21137 0.96164 0.97001 0.99861 1.21154 0.99688 0.98360 0.94886 1.21047 0.96822 0.99688 0.94240 1.22896 0.99640 0.97080 0.88601 0.93119 0.93426 0.93274 0.91609 0.91605 0.92507 0.96159 0.99602 0.94778 0.93043 0.89790 0.96517 0.90673 0.90326 0.90813 0.93805 0.90077 0.94049 0.86323 0.86211 0.86327 0.86186 0.85917 0.90055 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.97 5.98 -26.73 -0.16 -2.13 16 3 C 0.05 0.97 4.83 -3.83 -0.02 0.95 16 4 N -0.53 -11.09 4.27 -236.08 -1.01 -12.10 16 5 C 0.19 4.95 4.57 -4.98 -0.02 4.93 16 6 C -0.50 -13.93 8.61 -34.44 -0.30 -14.23 16 7 H 0.06 1.74 7.64 -52.49 -0.40 1.34 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.08 1.41 4.08 -3.83 -0.02 1.40 16 15 C -0.10 -1.55 2.90 -88.80 -0.26 -1.80 16 16 H 0.07 1.02 6.09 -51.93 -0.32 0.70 16 17 C -0.11 -1.62 6.44 -24.59 -0.16 -1.77 16 18 C 0.04 0.52 5.35 -2.30 -0.01 0.51 16 19 N -0.52 -6.71 5.31 -232.69 -1.24 -7.95 16 20 C 0.09 0.95 5.02 -4.98 -0.02 0.92 16 21 C -0.08 -0.83 4.63 -104.63 -0.48 -1.32 16 22 C -0.11 -1.13 8.20 -39.58 -0.32 -1.45 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 27 C 0.05 0.61 6.47 -2.83 -0.02 0.59 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.26 6.89 -51.93 -0.36 0.90 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.90 5.82 -51.93 -0.30 0.60 16 34 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 35 H -0.01 -0.38 8.00 -51.93 -0.42 -0.80 16 36 H 0.03 0.94 6.56 -51.92 -0.34 0.60 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.08 1.74 7.16 -51.93 -0.37 1.37 16 39 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.53 5.72 -51.93 -0.30 0.23 16 44 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 45 H 0.04 0.43 7.90 -51.93 -0.41 0.02 16 46 H 0.12 1.10 7.12 -52.49 -0.37 0.73 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 51 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 52 H 0.05 0.59 7.49 -51.93 -0.39 0.20 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -29.60 401.78 -12.99 -42.58 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -9.41 Total: 0.22 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -3.10 Total: -19.49 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -1.51 Total: -46.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.60 -12.99 -42.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208947350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.753 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds