Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47063 * 2 1 4 4 N 1.46904 * 109.47331 * 174.85536 * 3 2 1 5 5 C 1.46896 * 110.99879 * 75.73164 * 4 3 2 6 6 C 1.50701 * 109.46887 * 199.54031 * 5 4 3 7 7 H 1.07995 * 120.00054 * 355.06983 * 6 5 4 8 8 C 1.37879 * 120.00026 * 175.07740 * 6 5 4 9 9 N 1.31522 * 119.99828 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00000 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47562 * 89.99610 * 10 8 6 12 12 H 1.48502 * 109.46916 * 209.99369 * 10 8 6 13 13 H 1.48499 * 109.47242 * 329.99226 * 10 8 6 14 14 C 1.46898 * 111.00143 * 199.68426 * 4 3 2 15 15 C 1.52995 * 109.47248 * 66.04356 * 14 4 3 16 16 H 1.09003 * 110.63116 * 308.10841 * 15 14 4 17 17 C 1.55144 * 110.70644 * 71.40186 * 15 14 4 18 18 C 1.54903 * 101.65540 * 154.03819 * 17 15 14 19 19 N 1.47852 * 104.79477 * 322.92820 * 18 17 15 20 20 C 1.46902 * 110.99865 * 146.36658 * 19 18 17 21 21 C 1.50697 * 109.47049 * 49.15620 * 20 19 18 22 22 C 1.38233 * 120.00086 * 269.72447 * 21 20 19 23 23 C 1.38239 * 119.99894 * 179.76580 * 22 21 20 24 24 C 1.38234 * 119.99752 * 0.51316 * 23 22 21 25 25 C 1.38232 * 120.00301 * 359.74461 * 24 23 22 26 26 C 1.38234 * 119.99700 * 90.00344 * 21 20 19 27 27 C 1.47445 * 108.56647 * 24.09830 * 19 18 17 28 28 H 1.09002 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47427 * 299.99874 * 1 2 3 30 30 H 1.08998 * 109.47097 * 60.00013 * 1 2 3 31 31 H 1.08999 * 109.46917 * 240.00145 * 2 1 3 32 32 H 1.08998 * 109.47097 * 119.99986 * 2 1 3 33 33 H 1.09003 * 109.47118 * 54.85684 * 3 2 1 34 34 H 1.08999 * 109.47408 * 294.85947 * 3 2 1 35 35 H 1.08990 * 109.47770 * 79.53519 * 5 4 3 36 36 H 1.09008 * 109.46982 * 319.53240 * 5 4 3 37 37 H 0.97000 * 119.99744 * 180.02562 * 9 8 6 38 38 H 1.08994 * 109.47345 * 186.04489 * 14 4 3 39 39 H 1.09002 * 109.47469 * 306.04561 * 14 4 3 40 40 H 1.08998 * 110.98873 * 272.12688 * 17 15 14 41 41 H 1.08995 * 110.99086 * 35.94389 * 17 15 14 42 42 H 1.09001 * 110.37579 * 204.10475 * 18 17 15 43 43 H 1.08995 * 110.37726 * 81.75961 * 18 17 15 44 44 H 1.08993 * 109.47066 * 169.15937 * 20 19 18 45 45 H 1.09001 * 109.46678 * 289.15662 * 20 19 18 46 46 H 1.08002 * 120.00192 * 0.02562 * 22 21 20 47 47 H 1.08002 * 119.99844 * 180.22931 * 23 22 21 48 48 H 1.08002 * 119.99510 * 179.71948 * 24 23 22 49 49 H 1.08003 * 119.99884 * 179.97438 * 25 24 23 50 50 H 1.08000 * 120.00275 * 359.97438 * 26 21 20 51 51 H 1.08996 * 109.88527 * 239.60361 * 27 19 18 52 52 H 1.08991 * 109.88592 * 118.41396 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5037 1.4444 0.1242 5 6 4.1402 1.0675 -1.1449 6 6 5.5538 0.6155 -0.8832 7 1 5.9670 0.6838 0.1123 8 6 6.3197 0.1149 -1.9146 9 7 5.8164 0.0313 -3.1268 10 14 8.0716 -0.4460 -1.5900 11 1 8.0708 -1.8849 -1.2230 12 1 8.8896 -0.2478 -2.8135 13 1 8.6474 0.3488 -0.4755 14 6 3.9909 2.7495 0.5902 15 6 3.5039 2.9949 2.0197 16 1 2.4260 2.8486 2.0887 17 6 4.2514 2.0737 3.0195 18 6 4.1570 2.8931 4.3307 19 7 4.3007 4.3022 3.9065 20 6 3.4976 5.1921 4.7556 21 6 3.7655 4.8798 6.2053 22 6 2.9926 3.9424 6.8647 23 6 3.2415 3.6525 8.1932 24 6 4.2565 4.3076 8.8652 25 6 5.0259 5.2488 8.2073 26 6 4.7804 5.5349 6.8773 27 6 3.8939 4.4109 2.4935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6033 1.9822 0.8404 34 1 1.7538 1.9290 -0.9324 35 1 4.1518 1.9270 -1.8150 36 1 3.5785 0.2549 -1.6059 37 1 6.3551 -0.3212 -3.8524 38 1 5.0806 2.7587 0.5710 39 1 3.6094 3.5342 -0.0632 40 1 3.7436 1.1146 3.1211 41 1 5.2901 1.9341 2.7202 42 1 4.9638 2.6171 5.0096 43 1 3.1890 2.7370 4.8069 44 1 3.7659 6.2286 4.5516 45 1 2.4396 5.0417 4.5410 46 1 2.1970 3.4335 6.3408 47 1 2.6400 2.9174 8.7073 48 1 4.4480 4.0843 9.9044 49 1 5.8186 5.7610 8.7325 50 1 5.3817 6.2703 6.3633 51 1 4.7249 4.7860 1.8962 52 1 3.0384 5.0804 2.4045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208947350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = 7.067688 kcal Electronic energy + Delta-G solvation = -26669.117998 eV Core-core repulsion = 23246.056513 eV Total energy + Delta-G solvation = -3423.061486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85413 -39.65366 -38.30850 -34.95379 -34.72228 -33.44154 -31.77875 -31.28468 -30.42004 -29.03142 -27.21657 -26.17798 -25.04434 -23.53786 -23.03240 -22.53877 -21.80057 -21.32026 -20.67515 -18.55232 -17.72534 -17.14927 -16.81379 -16.61245 -16.14112 -16.00739 -15.84484 -15.76419 -15.15396 -14.90435 -14.58689 -14.43028 -14.19802 -14.09346 -13.98192 -13.73015 -13.41652 -13.26510 -13.15806 -13.02239 -12.87910 -12.67229 -12.61364 -12.34864 -12.26291 -12.03126 -11.94304 -11.88462 -11.78359 -11.63845 -11.61184 -11.51084 -11.26118 -11.02796 -10.57365 -9.75985 -9.68099 -9.18670 -8.95324 -8.18233 -6.27282 0.45687 0.55296 1.40243 1.41229 1.52505 2.40783 2.80851 3.11743 3.23783 3.26331 3.73468 3.75251 3.94411 3.99185 4.05951 4.10936 4.19920 4.26529 4.29005 4.36007 4.42401 4.47271 4.55574 4.60496 4.63625 4.65976 4.69473 4.73037 4.79477 4.82592 4.86548 4.96433 4.98795 5.04295 5.12969 5.15802 5.20097 5.20572 5.23198 5.29149 5.31059 5.37714 5.47397 5.50193 5.60041 5.66781 5.69556 5.74372 6.00843 6.11466 6.13502 6.18554 6.44167 6.69165 6.88683 7.41887 8.92311 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003020 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.364956 B = 9267.882866 C =10552.566713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.055 3.945 4 N -0.537 5.537 5 C 0.209 3.791 6 C -0.513 4.513 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.080 3.920 15 C -0.092 4.092 16 H 0.083 0.917 17 C -0.107 4.107 18 C 0.054 3.946 19 N -0.532 5.532 20 C 0.090 3.910 21 C -0.093 4.093 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.130 4.130 26 C -0.114 4.114 27 C 0.052 3.948 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.011 0.989 35 H -0.045 1.045 36 H 0.009 0.991 37 H 0.263 0.737 38 H 0.055 0.945 39 H 0.016 0.984 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.125 0.875 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.126 0.874 51 H 0.069 0.931 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 9.906 21.847 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.073 4.073 4 N -0.260 5.260 5 C 0.083 3.917 6 C -0.552 4.552 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.048 4.048 15 C -0.111 4.111 16 H 0.101 0.899 17 C -0.145 4.145 18 C -0.074 4.074 19 N -0.256 5.256 20 C -0.037 4.037 21 C -0.093 4.093 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.076 4.076 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.029 0.971 35 H -0.028 1.028 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.143 0.857 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.155 0.845 50 H 0.144 0.856 51 H 0.087 0.913 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.944 9.685 22.066 25.374 hybrid contribution 0.070 -0.101 -1.422 1.427 sum -7.874 9.584 20.644 24.084 Atomic orbital electron populations 1.21675 0.93640 1.02241 1.02106 1.21430 0.96534 0.96099 1.01120 1.22208 0.88368 0.97406 0.99341 1.62058 1.04883 1.28338 1.30768 1.19376 0.94051 0.92828 0.85437 1.21445 0.98071 1.40686 0.94975 0.92256 1.25865 1.02920 0.96099 0.94758 1.70087 1.38724 1.47659 1.01256 0.85458 0.79171 0.78801 0.77668 1.19890 1.20805 1.19048 1.21881 0.99508 0.88934 0.94522 1.22318 1.00015 0.95107 0.93667 0.89872 1.22516 1.00061 0.98124 0.93788 1.23000 1.00588 0.87152 0.96620 1.63733 1.53503 1.06476 1.01925 1.21286 0.95608 0.97917 0.88880 1.19863 0.96764 0.97526 0.95160 1.21264 0.99972 0.97606 0.95292 1.21403 0.98495 1.00248 0.94553 1.21465 0.95720 0.96489 1.00945 1.21435 1.00170 0.98493 0.94700 1.21225 0.97018 1.00060 0.94924 1.22794 0.99982 0.96000 0.88814 0.91881 0.91289 0.93038 0.94944 0.91914 0.89474 0.97112 1.02761 0.97313 0.92823 0.92693 0.96561 0.91014 0.93004 0.91449 0.92266 0.89373 0.93249 0.85744 0.84442 0.84236 0.84455 0.85597 0.91271 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.91 71.98 0.71 -2.72 16 2 C -0.11 -3.81 5.98 30.59 0.18 -3.63 16 3 C 0.05 1.94 4.83 86.30 0.42 2.35 16 4 N -0.54 -22.95 4.27 -900.83 -3.85 -26.80 16 5 C 0.21 11.32 4.57 85.56 0.39 11.71 16 6 C -0.51 -29.62 8.61 25.60 0.22 -29.40 16 7 H 0.06 3.39 7.64 -2.91 -0.02 3.37 16 8 C 0.00 0.06 5.46 84.65 0.46 0.53 16 9 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 10 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.08 3.04 4.08 86.30 0.35 3.39 16 15 C -0.09 -2.65 2.90 -9.61 -0.03 -2.68 16 16 H 0.08 2.21 6.09 -2.39 -0.01 2.20 16 17 C -0.11 -3.18 6.44 31.98 0.21 -2.97 16 18 C 0.05 1.32 5.35 86.77 0.46 1.79 16 19 N -0.53 -12.91 5.31 -890.11 -4.72 -17.63 16 20 C 0.09 1.77 5.02 85.56 0.43 2.19 16 21 C -0.09 -1.81 4.63 -19.87 -0.09 -1.90 16 22 C -0.12 -2.21 8.20 22.27 0.18 -2.03 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 25 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 26 C -0.11 -2.13 9.70 22.27 0.22 -1.91 16 27 C 0.05 1.32 6.47 86.65 0.56 1.88 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 1.28 6.89 -2.39 -0.02 1.27 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 2.57 5.82 -2.39 -0.01 2.55 16 34 H 0.01 0.40 8.00 -2.39 -0.02 0.38 16 35 H -0.05 -2.67 8.00 -2.39 -0.02 -2.69 16 36 H 0.01 0.51 6.56 -2.38 -0.02 0.50 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.05 2.39 7.16 -2.39 -0.02 2.37 16 39 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.81 7.94 -2.39 -0.02 1.79 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.29 5.72 -2.39 -0.01 1.28 16 44 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 45 H 0.05 0.90 7.90 -2.39 -0.02 0.88 16 46 H 0.12 2.01 7.12 -2.91 -0.02 1.99 16 47 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 49 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 50 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 51 H 0.07 1.92 7.82 -2.39 -0.02 1.90 16 52 H 0.07 1.49 7.49 -2.39 -0.02 1.48 16 Total: -1.00 -65.70 401.78 -0.06 -65.76 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.85 Total: 17.19 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 5.35 Total: -28.86 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -8.29 Total: -101.53 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -65.70 -0.06 -65.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208947350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.831 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds