Wall clock time and date at job start Tue Mar 31 2020 11:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47295 * 2 1 4 4 C 1.52995 * 109.47295 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47612 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99538 * 270.00059 * 5 4 3 7 7 H 1.07990 * 120.00263 * 1.77027 * 6 5 4 8 8 C 1.38816 * 119.99826 * 181.77140 * 6 5 4 9 9 N 1.31616 * 120.00158 * 320.08912 * 8 6 5 10 10 Si 1.86803 * 119.99964 * 140.08864 * 8 6 5 11 11 H 1.48499 * 109.47070 * 90.00052 * 10 8 6 12 12 H 1.48500 * 109.46933 * 210.00140 * 10 8 6 13 13 H 1.48507 * 109.46982 * 329.99985 * 10 8 6 14 14 C 1.46500 * 120.00456 * 89.99346 * 5 4 3 15 15 C 1.52994 * 109.47203 * 95.62647 * 14 5 4 16 16 H 1.09001 * 110.62901 * 309.65654 * 15 14 5 17 17 C 1.55146 * 110.70484 * 72.94649 * 15 14 5 18 18 C 1.54911 * 101.65133 * 154.03690 * 17 15 14 19 19 N 1.47848 * 104.79681 * 322.93313 * 18 17 15 20 20 C 1.46891 * 110.99917 * 146.36342 * 19 18 17 21 21 C 1.50706 * 109.47196 * 69.15728 * 20 19 18 22 22 C 1.38225 * 119.99914 * 269.72431 * 21 20 19 23 23 C 1.38244 * 120.00109 * 179.76647 * 22 21 20 24 24 C 1.38241 * 119.99409 * 0.48441 * 23 22 21 25 25 C 1.38233 * 120.00246 * 359.79171 * 24 23 22 26 26 C 1.38236 * 119.99957 * 359.95612 * 25 24 23 27 27 C 1.47444 * 108.56696 * 24.09470 * 19 18 17 28 28 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47540 * 300.00901 * 1 2 3 30 30 H 1.09007 * 109.46545 * 60.00319 * 1 2 3 31 31 H 1.09007 * 109.46882 * 119.99255 * 2 1 3 32 32 H 1.08994 * 109.47644 * 239.99638 * 2 1 3 33 33 H 1.08998 * 109.47070 * 299.99605 * 3 2 1 34 34 H 1.08997 * 109.47509 * 59.99524 * 3 2 1 35 35 H 1.09007 * 109.46882 * 299.99255 * 4 3 2 36 36 H 1.09001 * 109.47954 * 59.99384 * 4 3 2 37 37 H 0.97004 * 120.00147 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47047 * 215.62996 * 14 5 4 39 39 H 1.09003 * 109.46888 * 335.62469 * 14 5 4 40 40 H 1.08993 * 110.99461 * 272.12989 * 17 15 14 41 41 H 1.09005 * 110.98799 * 35.94627 * 17 15 14 42 42 H 1.08998 * 110.37209 * 204.10350 * 18 17 15 43 43 H 1.08993 * 110.46965 * 81.80705 * 18 17 15 44 44 H 1.09007 * 109.47164 * 189.15166 * 20 19 18 45 45 H 1.08991 * 109.47526 * 309.15733 * 20 19 18 46 46 H 1.07998 * 120.00007 * 359.97438 * 22 21 20 47 47 H 1.07993 * 120.00225 * 180.25451 * 23 22 21 48 48 H 1.07992 * 119.99485 * 179.76836 * 24 23 22 49 49 H 1.07990 * 119.99903 * 179.97438 * 25 24 23 50 50 H 1.07994 * 119.99851 * 179.97438 * 26 25 24 51 51 H 1.09007 * 109.88896 * 239.60634 * 27 19 18 52 52 H 1.08998 * 110.02358 * 118.49538 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2871 3.4694 -1.1845 7 1 4.0804 2.9706 -2.1197 8 6 4.7848 4.7653 -1.1842 9 7 4.3505 5.6369 -0.2988 10 14 6.0710 5.2721 -2.4406 11 1 5.3968 5.7964 -3.6553 12 1 6.9394 6.3284 -1.8614 13 1 6.8995 4.0942 -2.8036 14 6 4.3020 3.5140 1.2702 15 6 5.7810 3.3912 1.6419 16 1 6.1067 2.3526 1.5836 17 6 6.6525 4.2952 0.7307 18 6 7.8813 4.5601 1.6360 19 7 7.3253 4.6849 3.0003 20 6 8.2626 4.1581 4.0010 21 6 9.4633 5.0646 4.0910 22 6 10.5636 4.8361 3.2861 23 6 11.6630 5.6705 3.3652 24 6 11.6659 6.7273 4.2563 25 6 10.5678 6.9523 5.0653 26 6 9.4663 6.1211 4.9824 27 6 6.0391 3.9657 3.0507 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.9329 0.9289 0.8910 36 1 3.9338 0.9285 -0.8890 37 1 4.6986 6.5424 -0.2984 38 1 4.0394 4.5669 1.1673 39 1 3.6920 3.0622 2.0525 40 1 6.9434 3.7687 -0.1782 41 1 6.1349 5.2246 0.4930 42 1 8.3767 5.4854 1.3420 43 1 8.5790 3.7243 1.5857 44 1 7.7693 4.1113 4.9719 45 1 8.5833 3.1586 3.7078 46 1 10.5630 4.0078 2.5931 47 1 12.5210 5.4944 2.7335 48 1 12.5262 7.3768 4.3208 49 1 10.5702 7.7777 5.7617 50 1 8.6086 6.2967 5.6147 51 1 5.2393 4.6547 3.3224 52 1 6.0930 3.1552 3.7776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208953563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:57 Heat of formation + Delta-G solvation = 53.271101 kcal Electronic energy + Delta-G solvation = -27125.909931 eV Core-core repulsion = 23704.851975 eV Total energy + Delta-G solvation = -3421.057955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.50606 -38.22325 -36.28904 -34.38539 -32.63018 -31.47679 -30.85857 -29.97225 -28.78340 -27.68261 -25.69011 -24.53874 -23.40891 -22.53360 -21.30794 -21.01286 -20.29355 -20.09188 -19.09812 -16.94273 -16.68140 -15.53400 -15.32414 -15.03876 -14.87871 -14.75863 -14.40566 -13.79071 -13.64818 -13.41468 -13.29120 -13.18502 -12.97819 -12.65040 -12.58171 -12.27911 -12.05790 -11.83327 -11.69434 -11.43273 -11.21904 -11.06902 -10.90528 -10.84306 -10.73664 -10.56716 -10.48985 -10.29148 -10.18874 -9.98153 -9.78310 -9.71614 -9.66867 -9.30378 -8.85868 -8.71768 -8.26144 -7.83035 -6.74379 -5.76740 -3.02247 1.40032 1.46099 3.41082 3.52254 3.55342 3.79664 4.51849 4.59196 4.85466 4.92223 5.03495 5.14070 5.18469 5.23296 5.33353 5.36932 5.48250 5.54855 5.56656 5.58401 5.65920 5.75181 5.84656 5.90373 5.95022 6.02486 6.06814 6.11236 6.13379 6.22273 6.27702 6.32145 6.35079 6.39910 6.50350 6.53684 6.53831 6.55691 6.62057 6.70089 6.75065 6.90845 6.94589 7.05038 7.07568 7.17049 7.20275 7.46691 7.54180 7.64472 7.82286 7.90531 8.46253 9.20230 9.91109 10.34677 11.16111 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.003335 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.814748 B = 8394.518974 C = 9596.071231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.139 4.139 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.250 4.250 7 H 0.075 0.925 8 C 0.012 3.988 9 N -0.868 5.868 10 Si 0.860 3.140 11 H -0.294 1.294 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.130 3.870 15 C -0.107 4.107 16 H 0.045 0.955 17 C -0.124 4.124 18 C 0.038 3.962 19 N -0.520 5.520 20 C 0.087 3.913 21 C -0.067 4.067 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.100 4.100 27 C 0.051 3.949 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.035 0.965 36 H 0.043 0.957 37 H 0.256 0.744 38 H 0.134 0.866 39 H 0.011 0.989 40 H 0.062 0.938 41 H 0.115 0.885 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.077 0.923 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.060 -3.398 9.419 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.179 4.179 4 C 0.024 3.976 5 N -0.310 5.310 6 C -0.377 4.377 7 H 0.093 0.907 8 C -0.185 4.185 9 N -0.514 5.514 10 Si 0.689 3.311 11 H -0.222 1.222 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.004 3.996 15 C -0.129 4.129 16 H 0.063 0.937 17 C -0.162 4.162 18 C -0.089 4.089 19 N -0.244 5.244 20 C -0.041 4.041 21 C -0.068 4.068 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.119 4.119 27 C -0.077 4.077 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.150 0.850 39 H 0.030 0.970 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.095 0.905 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.990 -2.721 9.558 12.150 hybrid contribution 1.022 -0.658 -0.855 1.486 sum 8.013 -3.379 8.702 12.302 Atomic orbital electron populations 1.21766 0.96729 1.00535 1.01652 1.21512 0.95126 0.98414 1.01031 1.22268 0.99467 0.94337 1.01838 1.20794 0.91299 0.86904 0.98593 1.44205 1.74908 1.08896 1.02980 1.19105 1.36552 0.96752 0.85327 0.90745 1.24353 1.01746 0.95095 0.97311 1.69903 1.40445 1.02955 1.38143 0.86991 0.84661 0.77932 0.81559 1.22182 1.21040 1.20898 1.21642 0.89997 1.03416 0.84530 1.22755 1.00900 0.96871 0.92395 0.93700 1.23257 0.93455 1.03337 0.96127 1.23207 0.98004 0.99058 0.88668 1.63608 1.02837 1.53932 1.04024 1.21232 0.91374 0.94268 0.97187 1.19836 0.94696 0.96485 0.95771 1.21091 0.93448 0.99843 0.98744 1.21090 0.98343 0.95677 0.98960 1.21087 0.98506 0.98060 0.96887 1.21114 0.93878 0.99477 0.99679 1.21021 0.97864 0.94415 0.98593 1.22821 0.91298 0.95870 0.97696 0.93616 0.93074 0.92949 0.92836 0.92636 0.92164 0.92974 0.94704 0.93888 0.93249 0.84967 0.97025 0.91919 0.86754 0.91670 0.95220 0.90459 0.94372 0.86493 0.86402 0.86502 0.86329 0.86053 0.90466 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.15 0.37 -1.54 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.92 16 3 C -0.14 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.15 3.01 5.64 -4.05 -0.02 2.99 16 5 N -0.59 -13.91 2.54 -173.24 -0.44 -14.35 16 6 C -0.25 -6.49 9.31 -15.06 -0.14 -6.63 16 7 H 0.07 1.96 8.05 -52.49 -0.42 1.54 16 8 C 0.01 0.31 2.79 -17.43 -0.05 0.27 16 9 N -0.87 -23.15 8.84 55.49 0.49 -22.65 16 10 Si 0.86 20.92 27.07 -169.99 -4.60 16.31 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.13 2.95 4.87 -4.04 -0.02 2.93 16 15 C -0.11 -2.21 3.16 -88.80 -0.28 -2.49 16 16 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.12 -2.70 3.99 -24.59 -0.10 -2.80 16 18 C 0.04 0.72 5.62 -2.29 -0.01 0.70 16 19 N -0.52 -9.11 5.15 -232.69 -1.20 -10.31 16 20 C 0.09 1.27 4.73 -4.98 -0.02 1.25 16 21 C -0.07 -0.94 5.09 -104.62 -0.53 -1.48 16 22 C -0.11 -1.51 8.93 -39.58 -0.35 -1.86 16 23 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 24 C -0.13 -1.44 10.05 -39.58 -0.40 -1.83 16 25 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 26 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 27 C 0.05 0.91 6.45 -2.84 -0.02 0.90 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.65 8.07 -51.92 -0.42 0.23 16 36 H 0.04 0.85 8.04 -51.93 -0.42 0.44 16 37 H 0.26 6.73 8.21 -40.82 -0.34 6.39 16 38 H 0.13 3.41 4.83 -51.93 -0.25 3.16 16 39 H 0.01 0.24 8.03 -51.93 -0.42 -0.17 16 40 H 0.06 1.47 6.45 -51.93 -0.34 1.13 16 41 H 0.11 2.80 4.26 -51.93 -0.22 2.58 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.03 0.52 7.00 -51.93 -0.36 0.16 16 44 H 0.08 1.02 7.98 -51.93 -0.41 0.60 16 45 H 0.04 0.55 7.79 -51.93 -0.40 0.14 16 46 H 0.12 1.50 7.50 -52.49 -0.39 1.11 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 49 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 50 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 51 H 0.08 1.44 7.82 -51.93 -0.41 1.03 16 52 H 0.04 0.62 7.56 -51.93 -0.39 0.23 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -26.71 393.82 -12.37 -39.08 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -9.49 Total: 5.54 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -3.07 Total: -19.56 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -1.15 Total: -47.31 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.60 Total: 16.31 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -26.71 -12.37 -39.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208953563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.351 kcal (2) G-P(sol) polarization free energy of solvation -26.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds