Wall clock time and date at job start Tue Mar 31 2020 11:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47295 * 2 1 4 4 C 1.52995 * 109.47295 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47612 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99538 * 270.00059 * 5 4 3 7 7 H 1.07990 * 120.00263 * 1.77027 * 6 5 4 8 8 C 1.38816 * 119.99826 * 181.77140 * 6 5 4 9 9 N 1.31616 * 120.00158 * 320.08912 * 8 6 5 10 10 Si 1.86803 * 119.99964 * 140.08864 * 8 6 5 11 11 H 1.48499 * 109.47070 * 90.00052 * 10 8 6 12 12 H 1.48500 * 109.46933 * 210.00140 * 10 8 6 13 13 H 1.48507 * 109.46982 * 329.99985 * 10 8 6 14 14 C 1.46500 * 120.00456 * 89.99346 * 5 4 3 15 15 C 1.52994 * 109.47203 * 95.62647 * 14 5 4 16 16 H 1.09001 * 110.62901 * 309.65654 * 15 14 5 17 17 C 1.55146 * 110.70484 * 72.94649 * 15 14 5 18 18 C 1.54911 * 101.65133 * 154.03690 * 17 15 14 19 19 N 1.47848 * 104.79681 * 322.93313 * 18 17 15 20 20 C 1.46891 * 110.99917 * 146.36342 * 19 18 17 21 21 C 1.50706 * 109.47196 * 69.15728 * 20 19 18 22 22 C 1.38225 * 119.99914 * 269.72431 * 21 20 19 23 23 C 1.38244 * 120.00109 * 179.76647 * 22 21 20 24 24 C 1.38241 * 119.99409 * 0.48441 * 23 22 21 25 25 C 1.38233 * 120.00246 * 359.79171 * 24 23 22 26 26 C 1.38236 * 119.99957 * 359.95612 * 25 24 23 27 27 C 1.47444 * 108.56696 * 24.09470 * 19 18 17 28 28 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47540 * 300.00901 * 1 2 3 30 30 H 1.09007 * 109.46545 * 60.00319 * 1 2 3 31 31 H 1.09007 * 109.46882 * 119.99255 * 2 1 3 32 32 H 1.08994 * 109.47644 * 239.99638 * 2 1 3 33 33 H 1.08998 * 109.47070 * 299.99605 * 3 2 1 34 34 H 1.08997 * 109.47509 * 59.99524 * 3 2 1 35 35 H 1.09007 * 109.46882 * 299.99255 * 4 3 2 36 36 H 1.09001 * 109.47954 * 59.99384 * 4 3 2 37 37 H 0.97004 * 120.00147 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47047 * 215.62996 * 14 5 4 39 39 H 1.09003 * 109.46888 * 335.62469 * 14 5 4 40 40 H 1.08993 * 110.99461 * 272.12989 * 17 15 14 41 41 H 1.09005 * 110.98799 * 35.94627 * 17 15 14 42 42 H 1.08998 * 110.37209 * 204.10350 * 18 17 15 43 43 H 1.08993 * 110.46965 * 81.80705 * 18 17 15 44 44 H 1.09007 * 109.47164 * 189.15166 * 20 19 18 45 45 H 1.08991 * 109.47526 * 309.15733 * 20 19 18 46 46 H 1.07998 * 120.00007 * 359.97438 * 22 21 20 47 47 H 1.07993 * 120.00225 * 180.25451 * 23 22 21 48 48 H 1.07992 * 119.99485 * 179.76836 * 24 23 22 49 49 H 1.07990 * 119.99903 * 179.97438 * 25 24 23 50 50 H 1.07994 * 119.99851 * 179.97438 * 26 25 24 51 51 H 1.09007 * 109.88896 * 239.60634 * 27 19 18 52 52 H 1.08998 * 110.02358 * 118.49538 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2871 3.4694 -1.1845 7 1 4.0804 2.9706 -2.1197 8 6 4.7848 4.7653 -1.1842 9 7 4.3505 5.6369 -0.2988 10 14 6.0710 5.2721 -2.4406 11 1 5.3968 5.7964 -3.6553 12 1 6.9394 6.3284 -1.8614 13 1 6.8995 4.0942 -2.8036 14 6 4.3020 3.5140 1.2702 15 6 5.7810 3.3912 1.6419 16 1 6.1067 2.3526 1.5836 17 6 6.6525 4.2952 0.7307 18 6 7.8813 4.5601 1.6360 19 7 7.3253 4.6849 3.0003 20 6 8.2626 4.1581 4.0010 21 6 9.4633 5.0646 4.0910 22 6 10.5636 4.8361 3.2861 23 6 11.6630 5.6705 3.3652 24 6 11.6659 6.7273 4.2563 25 6 10.5678 6.9523 5.0653 26 6 9.4663 6.1211 4.9824 27 6 6.0391 3.9657 3.0507 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.9329 0.9289 0.8910 36 1 3.9338 0.9285 -0.8890 37 1 4.6986 6.5424 -0.2984 38 1 4.0394 4.5669 1.1673 39 1 3.6920 3.0622 2.0525 40 1 6.9434 3.7687 -0.1782 41 1 6.1349 5.2246 0.4930 42 1 8.3767 5.4854 1.3420 43 1 8.5790 3.7243 1.5857 44 1 7.7693 4.1113 4.9719 45 1 8.5833 3.1586 3.7078 46 1 10.5630 4.0078 2.5931 47 1 12.5210 5.4944 2.7335 48 1 12.5262 7.3768 4.3208 49 1 10.5702 7.7777 5.7617 50 1 8.6086 6.2967 5.6147 51 1 5.2393 4.6547 3.3224 52 1 6.0930 3.1552 3.7776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208953563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:56 Heat of formation + Delta-G solvation = 41.686259 kcal Electronic energy + Delta-G solvation = -27126.412287 eV Core-core repulsion = 23704.851975 eV Total energy + Delta-G solvation = -3421.560312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.67638 -39.55550 -37.88033 -35.81019 -33.92097 -33.29719 -31.77887 -31.27923 -30.29702 -29.22150 -27.18499 -26.08315 -24.90115 -23.48490 -22.54513 -22.42258 -21.76921 -21.44622 -20.79358 -18.77694 -17.69507 -16.92252 -16.73288 -16.48148 -16.24555 -16.06770 -15.70259 -15.51433 -15.17494 -14.67047 -14.59959 -14.34252 -14.22904 -14.03815 -13.87137 -13.64430 -13.37254 -13.27329 -13.19435 -12.88438 -12.82647 -12.50094 -12.42902 -12.36064 -12.00798 -11.93356 -11.83913 -11.81282 -11.70017 -11.62885 -11.50692 -11.46350 -11.25994 -11.06442 -10.20472 -9.78728 -9.67521 -9.20193 -8.66588 -7.76255 -5.02990 0.45348 0.53451 1.41632 1.50916 1.55090 2.54405 2.80094 3.17570 3.29454 3.60565 3.83662 3.94360 3.98419 4.12637 4.15650 4.17561 4.25607 4.28914 4.33682 4.39298 4.44878 4.50406 4.56557 4.59856 4.65812 4.69199 4.78094 4.79774 4.85263 4.90253 5.00241 5.06047 5.07082 5.09360 5.14293 5.17233 5.18561 5.20855 5.36911 5.44931 5.48166 5.50549 5.58308 5.62522 5.63626 5.73394 5.74533 5.82123 5.96651 6.07261 6.14024 6.23761 6.51904 7.22359 8.00467 8.39347 9.12683 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.003335 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.814748 B = 8394.518974 C = 9596.071231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.127 4.127 4 C 0.148 3.852 5 N -0.604 5.604 6 C -0.259 4.259 7 H 0.065 0.935 8 C -0.009 4.009 9 N -0.882 5.882 10 Si 0.898 3.102 11 H -0.299 1.299 12 H -0.289 1.289 13 H -0.285 1.285 14 C 0.134 3.866 15 C -0.100 4.100 16 H 0.044 0.956 17 C -0.123 4.123 18 C 0.052 3.948 19 N -0.528 5.528 20 C 0.090 3.910 21 C -0.087 4.087 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.113 4.113 27 C 0.060 3.940 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.022 0.978 40 H 0.040 0.960 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.041 0.959 46 H 0.115 0.885 47 H 0.137 0.863 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.128 0.872 51 H 0.068 0.932 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 -4.220 10.955 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.167 4.167 4 C 0.022 3.978 5 N -0.324 5.324 6 C -0.388 4.388 7 H 0.083 0.917 8 C -0.206 4.206 9 N -0.529 5.529 10 Si 0.727 3.273 11 H -0.227 1.227 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.008 3.992 15 C -0.122 4.122 16 H 0.063 0.937 17 C -0.162 4.162 18 C -0.076 4.076 19 N -0.252 5.252 20 C -0.037 4.037 21 C -0.088 4.088 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.132 4.132 27 C -0.068 4.068 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.040 0.960 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.059 0.941 46 H 0.133 0.867 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.160 0.840 50 H 0.146 0.854 51 H 0.086 0.914 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.944 -3.564 11.100 14.107 hybrid contribution 0.743 -0.396 -1.324 1.569 sum 8.687 -3.960 9.776 13.665 Atomic orbital electron populations 1.21745 0.95364 1.01978 1.01410 1.21453 0.96303 0.95631 1.02018 1.22082 0.97940 0.96684 1.00029 1.20952 0.92442 0.85179 0.99223 1.44378 1.75430 1.10073 1.02492 1.19199 1.36674 0.96831 0.86049 0.91697 1.24599 1.02439 0.95206 0.98344 1.70015 1.40950 1.02797 1.39110 0.86410 0.83376 0.77318 0.80169 1.22673 1.21451 1.21092 1.21483 0.91507 1.01753 0.84506 1.22606 0.99140 0.96635 0.93810 0.93743 1.23053 0.94938 1.02011 0.96155 1.22983 0.96712 0.98985 0.88892 1.63547 1.03293 1.54547 1.03818 1.21271 0.91202 0.94450 0.96774 1.19877 0.94731 0.97254 0.96917 1.21219 0.94073 1.00430 0.99016 1.21389 0.98527 0.95573 0.99344 1.21463 0.99252 0.97908 0.96021 1.21452 0.93419 0.99722 0.99929 1.21225 0.98772 0.94481 0.98677 1.22696 0.91404 0.96278 0.96419 0.91314 0.93063 0.93534 0.91412 0.92047 0.94691 0.94017 0.93066 0.94078 0.93781 0.87809 0.95967 0.94153 0.89290 0.92620 0.94033 0.88932 0.94086 0.86675 0.84557 0.83881 0.83973 0.85363 0.91389 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.12 -3.12 5.93 30.59 0.18 -2.94 16 3 C -0.13 -4.54 5.54 30.59 0.17 -4.37 16 4 C 0.15 5.82 5.64 86.38 0.49 6.31 16 5 N -0.60 -28.73 2.54 -702.01 -1.78 -30.51 16 6 C -0.26 -13.76 9.31 84.03 0.78 -12.97 16 7 H 0.07 3.50 8.05 -2.92 -0.02 3.48 16 8 C -0.01 -0.50 2.79 84.86 0.24 -0.27 16 9 N -0.88 -48.31 8.84 21.65 0.19 -48.12 16 10 Si 0.90 43.99 27.07 68.60 1.86 45.85 16 11 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 14 C 0.13 6.09 4.87 86.38 0.42 6.51 16 15 C -0.10 -4.10 3.16 -9.61 -0.03 -4.13 16 16 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 17 C -0.12 -5.45 3.99 31.98 0.13 -5.33 16 18 C 0.05 1.94 5.62 86.77 0.49 2.43 16 19 N -0.53 -17.98 5.15 -890.10 -4.59 -22.56 16 20 C 0.09 2.48 4.73 85.56 0.40 2.89 16 21 C -0.09 -2.33 5.09 -19.87 -0.10 -2.43 16 22 C -0.13 -3.30 8.93 22.27 0.20 -3.10 16 23 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 24 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 25 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 26 C -0.11 -2.74 9.70 22.27 0.22 -2.52 16 27 C 0.06 2.08 6.45 86.65 0.56 2.64 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.84 8.07 -2.38 -0.02 1.82 16 36 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 37 H 0.25 13.61 8.21 -92.71 -0.76 12.84 16 38 H 0.11 5.49 4.83 -2.39 -0.01 5.47 16 39 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 40 H 0.04 1.92 6.45 -2.39 -0.02 1.90 16 41 H 0.09 4.46 4.26 -2.38 -0.01 4.45 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.04 1.44 7.00 -2.39 -0.02 1.42 16 44 H 0.09 2.24 7.98 -2.38 -0.02 2.22 16 45 H 0.04 1.10 7.79 -2.39 -0.02 1.09 16 46 H 0.12 2.88 7.50 -2.91 -0.02 2.86 16 47 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 48 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 49 H 0.14 2.20 8.06 -2.92 -0.02 2.18 16 50 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 51 H 0.07 2.49 7.82 -2.38 -0.02 2.48 16 52 H 0.06 1.90 7.56 -2.39 -0.02 1.88 16 Total: -1.00 -58.13 393.82 2.06 -56.07 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.86 Total: 26.73 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 5.52 Total: -27.46 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -6.18 Total: -101.19 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.86 Total: 45.85 kcal Total: -58.13 2.06 -56.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208953563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.756 kcal (2) G-P(sol) polarization free energy of solvation -58.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds