Wall clock time and date at job start Tue Mar 31 2020 11:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08989 * 109.46536 * 2 1 4 4 C 1.53032 * 109.46185 * 119.98403 * 2 1 3 5 5 C 1.53123 * 109.31224 * 179.17396 * 4 2 1 6 6 C 1.53121 * 109.15803 * 302.40402 * 5 4 2 7 7 C 1.53043 * 109.31060 * 57.58881 * 6 5 4 8 8 H 1.09002 * 109.45857 * 180.82523 * 7 6 5 9 9 C 1.53003 * 109.45842 * 60.86252 * 7 6 5 10 10 N 1.46842 * 109.52279 * 300.84421 * 7 6 5 11 11 C 1.46910 * 110.99687 * 185.83947 * 10 7 6 12 12 C 1.50692 * 109.46964 * 51.94102 * 11 10 7 13 13 C 1.38288 * 119.92481 * 263.61853 * 12 11 10 14 14 C 1.38106 * 120.07711 * 179.73084 * 13 12 11 15 15 C 1.38917 * 119.91920 * 0.54434 * 14 13 12 16 16 N 1.39678 * 120.07063 * 179.70640 * 15 14 13 17 17 C 1.46502 * 119.99832 * 180.02562 * 16 15 14 18 18 C 1.46502 * 120.00108 * 0.02562 * 16 15 14 19 19 C 1.50708 * 109.46805 * 90.00000 * 18 16 15 20 20 H 1.07995 * 120.00289 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99274 * 180.02562 * 19 18 16 22 22 N 1.31507 * 120.00395 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99524 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47193 * 59.99781 * 23 21 19 25 25 H 1.48505 * 109.46913 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46755 * 299.99783 * 23 21 19 27 27 C 1.38908 * 119.85344 * 359.72426 * 15 14 13 28 28 C 1.38103 * 119.92322 * 0.02562 * 27 15 14 29 29 H 1.09000 * 109.46760 * 300.01747 * 1 2 3 30 30 H 1.08995 * 109.47167 * 60.02215 * 1 2 3 31 31 H 1.09002 * 109.46867 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.50505 * 299.12972 * 4 2 1 33 33 H 1.09001 * 109.50865 * 59.21370 * 4 2 1 34 34 H 1.09002 * 109.51815 * 62.26614 * 5 4 2 35 35 H 1.08990 * 109.52662 * 182.45679 * 5 4 2 36 36 H 1.08999 * 109.47011 * 297.65190 * 6 5 4 37 37 H 1.08997 * 109.53929 * 177.57419 * 6 5 4 38 38 H 1.09004 * 109.46920 * 303.39366 * 9 7 6 39 39 H 1.08998 * 109.47345 * 63.39903 * 9 7 6 40 40 H 1.09002 * 109.46812 * 183.39963 * 9 7 6 41 41 H 1.08993 * 109.46683 * 171.94289 * 11 10 7 42 42 H 1.09007 * 109.46569 * 291.93958 * 11 10 7 43 43 H 1.08008 * 119.96211 * 359.97438 * 13 12 11 44 44 H 1.07997 * 120.04415 * 180.27100 * 14 13 12 45 45 H 1.08999 * 109.46854 * 90.00289 * 17 16 15 46 46 H 1.08995 * 109.46762 * 210.00350 * 17 16 15 47 47 H 1.09007 * 109.46795 * 330.00022 * 17 16 15 48 48 H 1.08994 * 109.47094 * 209.99962 * 18 16 15 49 49 H 1.09001 * 109.47110 * 330.00396 * 18 16 15 50 50 H 0.97007 * 119.99939 * 179.97438 * 22 21 19 51 51 H 1.07997 * 120.03837 * 180.02562 * 27 15 14 52 52 H 1.08000 * 119.96206 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2498 5 6 3.5710 -0.7372 1.2359 6 6 4.0548 -1.4189 -0.0470 7 6 3.4864 -0.6776 -1.2593 8 1 3.8175 -1.1697 -2.1738 9 6 3.9832 0.7695 -1.2508 10 7 2.0193 -0.6917 -1.1995 11 6 1.4372 -0.1103 -2.4166 12 6 2.0326 -0.7807 -3.6278 13 6 3.0980 -0.1950 -4.2866 14 6 3.6497 -0.8095 -5.3936 15 6 3.1257 -2.0117 -5.8518 16 7 3.6773 -2.6328 -6.9748 17 6 3.1231 -3.9003 -7.4569 18 6 4.8099 -2.0167 -7.6704 19 6 6.0993 -2.5177 -7.0723 20 1 6.0773 -3.2239 -6.2556 21 6 7.3071 -2.0735 -7.5674 22 7 7.3339 -1.2131 -8.5616 23 14 8.9055 -2.6949 -6.8266 24 1 8.9783 -4.1708 -6.9738 25 1 10.0535 -2.0703 -7.5317 26 1 8.9550 -2.3380 -5.3860 27 6 2.0519 -2.5945 -5.1910 28 6 1.5084 -1.9772 -4.0815 29 1 -0.3633 0.5141 0.8898 30 1 -0.3633 0.5135 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6896 -0.1985 2.1399 33 1 1.6654 -1.7447 1.2577 34 1 3.9463 0.2857 1.2680 35 1 3.9374 -1.2879 2.1022 36 1 3.7125 -2.4536 -0.0598 37 1 5.1439 -1.3954 -0.0838 38 1 3.7047 1.2438 -0.3097 39 1 5.0680 0.7819 -1.3569 40 1 3.5308 1.3138 -2.0798 41 1 0.3579 -0.2617 -2.4112 42 1 1.6542 0.9575 -2.4488 43 1 3.5018 0.7422 -3.9327 44 1 4.4846 -0.3537 -5.9051 45 1 2.3340 -3.6996 -8.1816 46 1 3.9117 -4.4846 -7.9310 47 1 2.7114 -4.4598 -6.6169 48 1 4.7735 -2.2794 -8.7275 49 1 4.7564 -0.9333 -7.5631 50 1 8.1836 -0.9003 -8.9096 51 1 1.6425 -3.5293 -5.5444 52 1 0.6733 -2.4296 -3.5675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231818152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:25 Heat of formation + Delta-G solvation = 27.251690 kcal Electronic energy + Delta-G solvation = -27544.761677 eV Core-core repulsion = 24122.575435 eV Total energy + Delta-G solvation = -3422.186242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15850 -38.66540 -35.86715 -33.70758 -33.19726 -32.58402 -30.44865 -29.86812 -28.12191 -27.79009 -26.59049 -25.90171 -24.36993 -22.91496 -21.75314 -21.53914 -21.23471 -19.56734 -18.40896 -16.63113 -16.43771 -16.00945 -15.65842 -15.24693 -14.91163 -14.62748 -14.33467 -14.05200 -13.79545 -13.63261 -13.20299 -13.06611 -12.91997 -12.89212 -12.57766 -12.48323 -12.16898 -12.10751 -11.84890 -11.78395 -11.62314 -11.52278 -11.37505 -11.23110 -10.97263 -10.86151 -10.73843 -10.65760 -10.46671 -10.24876 -10.21282 -10.05177 -9.83415 -9.74274 -8.79665 -8.50672 -8.24063 -8.05831 -6.44523 -6.01122 -4.17677 2.13357 2.25422 3.27575 3.31922 3.35333 3.99440 4.16904 4.41152 4.60885 4.73768 4.78434 4.83888 5.07537 5.21258 5.25853 5.27307 5.35423 5.37698 5.42121 5.45835 5.59039 5.60448 5.64523 5.66976 5.74410 5.82254 5.84287 5.85242 5.89258 5.99092 6.02250 6.04134 6.08629 6.13827 6.16743 6.19878 6.30180 6.33455 6.41591 6.46570 6.53030 6.68080 6.96073 7.05118 7.20791 7.23933 7.31375 7.33970 7.41665 7.62970 7.80771 8.15656 8.27978 8.50536 8.91340 9.49140 10.95338 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003611 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.962132 B = 7752.915588 C = 8910.155695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 H 0.041 0.959 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.111 4.111 7 C 0.079 3.921 8 H 0.097 0.903 9 C -0.188 4.188 10 N -0.520 5.520 11 C 0.108 3.892 12 C -0.169 4.169 13 C -0.069 4.069 14 C -0.188 4.188 15 C 0.241 3.759 16 N -0.616 5.616 17 C 0.099 3.901 18 C 0.250 3.750 19 C -0.532 4.532 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.223 4.223 28 C -0.051 4.051 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.029 0.971 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.112 0.888 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.070 2.130 15.783 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 H 0.059 0.941 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.029 4.029 8 H 0.115 0.885 9 C -0.246 4.246 10 N -0.245 5.245 11 C -0.019 4.019 12 C -0.172 4.172 13 C -0.088 4.088 14 C -0.210 4.210 15 C 0.134 3.866 16 N -0.322 5.322 17 C -0.046 4.046 18 C 0.130 3.870 19 C -0.570 4.570 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.246 4.246 28 C -0.070 4.070 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.125 0.875 44 H 0.148 0.852 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.130 0.870 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.998 1.637 15.477 19.651 hybrid contribution 1.391 0.496 0.219 1.493 sum -10.607 2.133 15.696 19.063 Atomic orbital electron populations 1.21914 0.94801 1.02446 1.01381 1.21614 0.94901 0.95786 0.90879 0.94131 1.21596 0.95541 1.01265 0.96249 1.21619 0.95785 1.00691 0.97882 1.21582 0.99684 0.99933 0.93688 1.21699 0.86917 0.94666 0.99628 0.88524 1.22539 1.01944 0.98651 1.01510 1.62268 1.06827 1.54287 1.01112 1.20878 0.98508 0.95268 0.87237 1.19143 1.00728 0.98348 0.99016 1.20728 0.94881 0.98490 0.94702 1.20842 1.03653 0.96697 0.99850 1.17952 0.90708 0.91300 0.86621 1.47093 1.34590 1.22376 1.28103 1.21467 0.98202 0.86524 0.98362 1.19266 0.81986 0.93910 0.91837 1.21550 0.90695 1.26660 1.18142 0.92306 1.24954 0.99181 0.94951 0.94921 1.69919 1.26564 1.31454 1.25498 0.86595 0.82581 0.79083 0.79437 1.20221 1.21187 1.20091 1.20566 1.01104 1.02415 1.00529 1.20469 0.98151 0.93919 0.94495 0.92690 0.92461 0.91845 0.92170 0.91253 0.92217 0.92281 0.91319 0.91818 0.92618 0.92190 0.92349 0.90626 0.94986 0.87450 0.85218 0.94657 0.91509 0.92668 0.95266 0.94688 0.92600 0.86981 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.77 37.16 0.33 -1.01 16 2 C 0.08 0.79 2.15 -67.72 -0.15 0.65 16 3 H 0.04 0.44 6.27 -51.93 -0.33 0.11 16 4 C -0.11 -1.03 5.37 -26.65 -0.14 -1.18 16 5 C -0.12 -1.20 5.70 -26.61 -0.15 -1.35 16 6 C -0.11 -1.30 5.61 -26.65 -0.15 -1.45 16 7 C 0.08 1.03 2.42 -67.72 -0.16 0.87 16 8 H 0.10 1.54 5.88 -51.93 -0.31 1.23 16 9 C -0.19 -2.27 7.95 37.16 0.30 -1.97 16 10 N -0.52 -6.41 4.54 -220.18 -1.00 -7.41 16 11 C 0.11 1.38 4.12 -4.97 -0.02 1.36 16 12 C -0.17 -2.61 4.13 -104.59 -0.43 -3.04 16 13 C -0.07 -1.17 7.95 -39.61 -0.32 -1.48 16 14 C -0.19 -3.79 9.21 -39.38 -0.36 -4.15 16 15 C 0.24 4.88 6.55 -83.78 -0.55 4.33 16 16 N -0.62 -13.22 2.99 -180.99 -0.54 -13.76 16 17 C 0.10 1.74 10.19 59.85 0.61 2.35 16 18 C 0.25 6.27 4.91 -5.19 -0.03 6.25 16 19 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 22 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 23 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.22 -3.90 9.21 -39.38 -0.36 -4.26 16 28 C -0.05 -0.81 9.71 -39.61 -0.38 -1.19 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.52 6.41 -51.93 -0.33 0.18 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.58 6.48 -51.93 -0.34 0.24 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.61 4.82 -51.93 -0.25 0.36 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.73 4.84 -51.93 -0.25 0.48 16 41 H 0.08 0.90 6.43 -51.93 -0.33 0.57 16 42 H 0.03 0.41 6.68 -51.93 -0.35 0.06 16 43 H 0.11 1.67 6.36 -52.48 -0.33 1.34 16 44 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.87 6.20 -51.92 -0.32 0.55 16 48 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 50 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.11 1.79 6.14 -52.49 -0.32 1.46 16 52 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -28.02 382.91 -11.17 -39.18 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.72 Total: 3.34 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.40 Total: -18.49 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.80 Total: -46.09 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.02 -11.17 -39.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231818152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.435 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds