Wall clock time and date at job start Tue Mar 31 2020 11:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08989 * 109.46536 * 2 1 4 4 C 1.53032 * 109.46185 * 119.98403 * 2 1 3 5 5 C 1.53123 * 109.31224 * 179.17396 * 4 2 1 6 6 C 1.53121 * 109.15803 * 302.40402 * 5 4 2 7 7 C 1.53043 * 109.31060 * 57.58881 * 6 5 4 8 8 H 1.09002 * 109.45857 * 180.82523 * 7 6 5 9 9 C 1.53003 * 109.45842 * 60.86252 * 7 6 5 10 10 N 1.46842 * 109.52279 * 300.84421 * 7 6 5 11 11 C 1.46910 * 110.99687 * 185.83947 * 10 7 6 12 12 C 1.50692 * 109.46964 * 51.94102 * 11 10 7 13 13 C 1.38288 * 119.92481 * 263.61853 * 12 11 10 14 14 C 1.38106 * 120.07711 * 179.73084 * 13 12 11 15 15 C 1.38917 * 119.91920 * 0.54434 * 14 13 12 16 16 N 1.39678 * 120.07063 * 179.70640 * 15 14 13 17 17 C 1.46502 * 119.99832 * 180.02562 * 16 15 14 18 18 C 1.46502 * 120.00108 * 0.02562 * 16 15 14 19 19 C 1.50708 * 109.46805 * 90.00000 * 18 16 15 20 20 H 1.07995 * 120.00289 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99274 * 180.02562 * 19 18 16 22 22 N 1.31507 * 120.00395 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99524 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47193 * 59.99781 * 23 21 19 25 25 H 1.48505 * 109.46913 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46755 * 299.99783 * 23 21 19 27 27 C 1.38908 * 119.85344 * 359.72426 * 15 14 13 28 28 C 1.38103 * 119.92322 * 0.02562 * 27 15 14 29 29 H 1.09000 * 109.46760 * 300.01747 * 1 2 3 30 30 H 1.08995 * 109.47167 * 60.02215 * 1 2 3 31 31 H 1.09002 * 109.46867 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.50505 * 299.12972 * 4 2 1 33 33 H 1.09001 * 109.50865 * 59.21370 * 4 2 1 34 34 H 1.09002 * 109.51815 * 62.26614 * 5 4 2 35 35 H 1.08990 * 109.52662 * 182.45679 * 5 4 2 36 36 H 1.08999 * 109.47011 * 297.65190 * 6 5 4 37 37 H 1.08997 * 109.53929 * 177.57419 * 6 5 4 38 38 H 1.09004 * 109.46920 * 303.39366 * 9 7 6 39 39 H 1.08998 * 109.47345 * 63.39903 * 9 7 6 40 40 H 1.09002 * 109.46812 * 183.39963 * 9 7 6 41 41 H 1.08993 * 109.46683 * 171.94289 * 11 10 7 42 42 H 1.09007 * 109.46569 * 291.93958 * 11 10 7 43 43 H 1.08008 * 119.96211 * 359.97438 * 13 12 11 44 44 H 1.07997 * 120.04415 * 180.27100 * 14 13 12 45 45 H 1.08999 * 109.46854 * 90.00289 * 17 16 15 46 46 H 1.08995 * 109.46762 * 210.00350 * 17 16 15 47 47 H 1.09007 * 109.46795 * 330.00022 * 17 16 15 48 48 H 1.08994 * 109.47094 * 209.99962 * 18 16 15 49 49 H 1.09001 * 109.47110 * 330.00396 * 18 16 15 50 50 H 0.97007 * 119.99939 * 179.97438 * 22 21 19 51 51 H 1.07997 * 120.03837 * 180.02562 * 27 15 14 52 52 H 1.08000 * 119.96206 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2498 5 6 3.5710 -0.7372 1.2359 6 6 4.0548 -1.4189 -0.0470 7 6 3.4864 -0.6776 -1.2593 8 1 3.8175 -1.1697 -2.1738 9 6 3.9832 0.7695 -1.2508 10 7 2.0193 -0.6917 -1.1995 11 6 1.4372 -0.1103 -2.4166 12 6 2.0326 -0.7807 -3.6278 13 6 3.0980 -0.1950 -4.2866 14 6 3.6497 -0.8095 -5.3936 15 6 3.1257 -2.0117 -5.8518 16 7 3.6773 -2.6328 -6.9748 17 6 3.1231 -3.9003 -7.4569 18 6 4.8099 -2.0167 -7.6704 19 6 6.0993 -2.5177 -7.0723 20 1 6.0773 -3.2239 -6.2556 21 6 7.3071 -2.0735 -7.5674 22 7 7.3339 -1.2131 -8.5616 23 14 8.9055 -2.6949 -6.8266 24 1 8.9783 -4.1708 -6.9738 25 1 10.0535 -2.0703 -7.5317 26 1 8.9550 -2.3380 -5.3860 27 6 2.0519 -2.5945 -5.1910 28 6 1.5084 -1.9772 -4.0815 29 1 -0.3633 0.5141 0.8898 30 1 -0.3633 0.5135 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6896 -0.1985 2.1399 33 1 1.6654 -1.7447 1.2577 34 1 3.9463 0.2857 1.2680 35 1 3.9374 -1.2879 2.1022 36 1 3.7125 -2.4536 -0.0598 37 1 5.1439 -1.3954 -0.0838 38 1 3.7047 1.2438 -0.3097 39 1 5.0680 0.7819 -1.3569 40 1 3.5308 1.3138 -2.0798 41 1 0.3579 -0.2617 -2.4112 42 1 1.6542 0.9575 -2.4488 43 1 3.5018 0.7422 -3.9327 44 1 4.4846 -0.3537 -5.9051 45 1 2.3340 -3.6996 -8.1816 46 1 3.9117 -4.4846 -7.9310 47 1 2.7114 -4.4598 -6.6169 48 1 4.7735 -2.2794 -8.7275 49 1 4.7564 -0.9333 -7.5631 50 1 8.1836 -0.9003 -8.9096 51 1 1.6425 -3.5293 -5.5444 52 1 0.6733 -2.4296 -3.5675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231818152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:24 Heat of formation + Delta-G solvation = 13.698419 kcal Electronic energy + Delta-G solvation = -27545.349390 eV Core-core repulsion = 24122.575435 eV Total energy + Delta-G solvation = -3422.773955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21095 -40.00834 -37.36091 -35.00378 -34.47564 -33.98076 -31.89127 -31.16772 -29.60757 -29.12817 -27.42861 -27.21686 -25.95366 -24.33037 -22.99218 -22.88361 -22.18463 -20.97711 -19.35013 -18.63958 -18.07705 -16.97247 -16.94380 -16.50664 -16.37902 -15.85881 -15.60892 -15.33428 -15.26268 -14.82509 -14.41151 -14.31744 -14.18904 -14.08296 -13.99090 -13.55723 -13.37654 -13.18714 -13.11346 -13.02769 -12.96649 -12.72310 -12.67579 -12.56494 -12.48323 -12.41219 -12.21392 -11.90631 -11.75886 -11.72230 -11.41587 -11.31251 -11.07354 -10.94793 -10.65011 -10.34619 -9.64678 -9.04260 -8.36289 -7.78696 -6.38301 0.71403 0.85387 1.35879 1.37592 1.45960 2.33283 2.63733 2.92833 3.05318 3.32713 3.88074 3.91913 3.98437 4.05600 4.12792 4.23474 4.27150 4.36847 4.43248 4.49469 4.53560 4.58729 4.60516 4.65048 4.65575 4.71759 4.74969 4.86031 4.87233 4.91748 4.99016 5.00726 5.04697 5.10074 5.13749 5.14067 5.19484 5.20279 5.21411 5.30955 5.34581 5.41105 5.43467 5.59184 5.62113 5.69676 5.70102 5.93838 6.06631 6.20422 6.30781 6.41824 6.50160 6.82245 6.94295 7.33591 8.82297 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003611 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.962132 B = 7752.915588 C = 8910.155695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 H 0.040 0.960 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.062 0.938 9 C -0.182 4.182 10 N -0.524 5.524 11 C 0.111 3.889 12 C -0.154 4.154 13 C -0.066 4.066 14 C -0.215 4.215 15 C 0.213 3.787 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.268 3.732 19 C -0.542 4.542 20 H 0.048 0.952 21 C 0.014 3.986 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.274 1.274 27 C -0.217 4.217 28 C -0.048 4.048 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.035 0.965 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.132 0.868 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.677 1.740 18.697 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.058 0.942 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.148 4.148 7 C -0.029 4.029 8 H 0.080 0.920 9 C -0.241 4.241 10 N -0.248 5.248 11 C -0.016 4.016 12 C -0.156 4.156 13 C -0.085 4.085 14 C -0.238 4.238 15 C 0.108 3.892 16 N -0.340 5.340 17 C -0.044 4.044 18 C 0.146 3.854 19 C -0.581 4.581 20 H 0.067 0.933 21 C -0.186 4.186 22 N -0.566 5.566 23 Si 0.784 3.216 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.199 1.199 27 C -0.240 4.240 28 C -0.067 4.067 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.053 0.947 43 H 0.134 0.866 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.149 0.851 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.639 1.241 18.416 22.950 hybrid contribution 1.805 0.669 -0.595 2.015 sum -11.833 1.910 17.822 21.478 Atomic orbital electron populations 1.21891 0.93457 1.02556 1.02275 1.21733 0.95964 0.95559 0.90116 0.94179 1.21597 0.95016 1.01166 0.96560 1.21597 0.96236 1.00723 0.97008 1.21558 0.99484 0.99478 0.94304 1.21580 0.87709 0.94905 0.98689 0.91981 1.22478 1.01462 0.98146 1.01993 1.62276 1.06170 1.54774 1.01628 1.20885 0.99252 0.95113 0.86307 1.19458 0.99162 0.97891 0.99137 1.20816 0.95235 0.98753 0.93738 1.20722 1.03811 0.97804 1.01457 1.18199 0.92149 0.91767 0.87037 1.46958 1.34380 1.23769 1.28910 1.21594 0.98194 0.85112 0.99549 1.18746 0.83093 0.92616 0.90906 1.21752 0.92042 1.26447 1.17858 0.93334 1.25764 1.02504 0.95030 0.95255 1.70028 1.27486 1.32453 1.26643 0.85589 0.78583 0.78873 0.78544 1.19315 1.20295 1.19890 1.20795 0.99841 1.02920 1.00433 1.20830 0.98475 0.93658 0.93735 0.90999 0.92460 0.92071 0.90165 0.91721 0.91886 0.91102 0.92223 0.92165 0.91095 0.92823 0.93025 0.88809 0.94659 0.86593 0.88894 0.92921 0.92582 0.90391 0.97340 0.97234 0.92374 0.85055 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.77 71.98 0.63 -1.45 16 2 C 0.07 1.31 2.15 44.94 0.10 1.40 16 3 H 0.04 0.73 6.27 -2.39 -0.01 0.72 16 4 C -0.11 -1.67 5.37 30.65 0.16 -1.50 16 5 C -0.12 -2.02 5.70 30.68 0.17 -1.85 16 6 C -0.11 -2.45 5.61 30.65 0.17 -2.28 16 7 C 0.08 2.00 2.42 44.94 0.11 2.11 16 8 H 0.06 1.99 5.88 -2.39 -0.01 1.98 16 9 C -0.18 -4.22 7.95 71.98 0.57 -3.65 16 10 N -0.52 -11.72 4.54 -850.51 -3.86 -15.58 16 11 C 0.11 2.58 4.12 85.55 0.35 2.93 16 12 C -0.15 -4.53 4.13 -19.84 -0.08 -4.61 16 13 C -0.07 -2.30 7.95 22.25 0.18 -2.12 16 14 C -0.22 -9.17 9.21 22.40 0.21 -8.96 16 15 C 0.21 8.86 6.55 38.21 0.25 9.11 16 16 N -0.63 -28.19 2.99 -726.53 -2.17 -30.37 16 17 C 0.10 3.49 10.19 127.77 1.30 4.79 16 18 C 0.27 14.32 4.91 85.64 0.42 14.74 16 19 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 20 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 21 C 0.01 0.78 5.46 84.66 0.46 1.24 16 22 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 23 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 27 C -0.22 -7.34 9.21 22.40 0.21 -7.13 16 28 C -0.05 -1.41 9.71 22.25 0.22 -1.19 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.83 6.41 -2.39 -0.02 0.81 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.05 6.48 -2.39 -0.02 1.03 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.41 4.82 -2.39 -0.01 1.40 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.25 4.84 -2.39 -0.01 1.24 16 41 H 0.09 1.89 6.43 -2.39 -0.02 1.88 16 42 H 0.04 0.81 6.68 -2.38 -0.02 0.80 16 43 H 0.12 3.72 6.36 -2.91 -0.02 3.70 16 44 H 0.09 4.58 6.14 -2.91 -0.02 4.57 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 47 H 0.08 2.36 6.20 -2.38 -0.01 2.35 16 48 H 0.01 0.48 8.07 -2.39 -0.02 0.46 16 49 H 0.01 0.56 6.20 -2.39 -0.01 0.54 16 50 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 51 H 0.13 3.87 6.14 -2.91 -0.02 3.86 16 52 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -62.81 382.91 2.84 -59.96 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.89 Total: 23.16 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 5.67 Total: -29.08 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.75 Total: -100.58 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.81 2.84 -59.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231818152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.663 kcal (2) G-P(sol) polarization free energy of solvation -62.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds