Wall clock time and date at job start Tue Mar 31 2020 11:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.44866 * 2 1 4 4 C 1.53033 * 109.46340 * 240.02731 * 2 1 3 5 5 C 1.53116 * 109.27572 * 299.16156 * 4 2 1 6 6 C 1.53120 * 109.16115 * 302.34564 * 5 4 2 7 7 C 1.53039 * 109.27788 * 57.65734 * 6 5 4 8 8 H 1.08998 * 109.45281 * 60.83162 * 7 6 5 9 9 C 1.52997 * 109.46331 * 180.80586 * 7 6 5 10 10 N 1.46842 * 109.46059 * 119.96750 * 2 1 3 11 11 C 1.46895 * 111.00501 * 294.17730 * 10 2 1 12 12 C 1.50701 * 109.47439 * 290.31121 * 11 10 2 13 13 C 1.38282 * 119.92288 * 269.72634 * 12 11 10 14 14 C 1.38109 * 120.07220 * 179.72080 * 13 12 11 15 15 C 1.38918 * 119.92316 * 0.55252 * 14 13 12 16 16 N 1.39674 * 120.07349 * 179.74980 * 15 14 13 17 17 C 1.46500 * 119.99891 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00162 * 359.96926 * 16 15 14 19 19 C 1.50703 * 109.47069 * 90.00245 * 18 16 15 20 20 H 1.08000 * 119.99638 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00045 * 180.02562 * 19 18 16 22 22 N 1.31517 * 119.99742 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99913 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47199 * 90.00553 * 23 21 19 25 25 H 1.48505 * 109.47126 * 210.00098 * 23 21 19 26 26 H 1.48500 * 109.47181 * 330.00206 * 23 21 19 27 27 C 1.38915 * 119.84997 * 359.71987 * 15 14 13 28 28 C 1.38106 * 119.92251 * 0.02562 * 27 15 14 29 29 H 1.08998 * 109.47200 * 300.03192 * 1 2 3 30 30 H 1.09003 * 109.47144 * 60.02603 * 1 2 3 31 31 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.50112 * 179.22389 * 4 2 1 33 33 H 1.08999 * 109.50718 * 59.10268 * 4 2 1 34 34 H 1.09004 * 109.52428 * 182.44369 * 5 4 2 35 35 H 1.08994 * 109.57760 * 62.28175 * 5 4 2 36 36 H 1.09002 * 109.50536 * 297.71317 * 6 5 4 37 37 H 1.09004 * 109.50676 * 177.59405 * 6 5 4 38 38 H 1.09003 * 109.47509 * 187.20136 * 9 7 6 39 39 H 1.09002 * 109.47049 * 307.19689 * 9 7 6 40 40 H 1.08996 * 109.47722 * 67.19775 * 9 7 6 41 41 H 1.09001 * 109.47742 * 170.30960 * 11 10 2 42 42 H 1.09005 * 109.46938 * 50.31028 * 11 10 2 43 43 H 1.07998 * 119.96326 * 359.96976 * 13 12 11 44 44 H 1.07997 * 120.03709 * 180.26879 * 14 13 12 45 45 H 1.09003 * 109.46771 * 89.99345 * 17 16 15 46 46 H 1.08997 * 109.46870 * 209.99524 * 17 16 15 47 47 H 1.09006 * 109.47048 * 329.99780 * 17 16 15 48 48 H 1.08994 * 109.47279 * 210.00384 * 18 16 15 49 49 H 1.09003 * 109.47132 * 330.00866 * 18 16 15 50 50 H 0.96997 * 119.99615 * 179.97438 * 22 21 19 51 51 H 1.07998 * 120.03721 * 180.02562 * 27 15 14 52 52 H 1.08002 * 119.95615 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2499 5 6 1.5443 -2.1695 -1.2355 6 6 2.0270 -2.8531 0.0468 7 6 1.5174 -2.0704 1.2592 8 1 0.4275 -2.0607 1.2531 9 6 2.0141 -2.7385 2.5428 10 7 2.0192 -0.6916 1.1994 11 6 1.6651 0.0508 2.4165 12 6 2.4684 1.3242 2.4799 13 6 3.6966 1.3341 3.1153 14 6 4.4380 2.4980 3.1703 15 6 3.9434 3.6624 2.5963 16 7 4.6883 4.8425 2.6546 17 6 4.1654 6.0694 2.0482 18 6 5.9923 4.8535 3.3221 19 6 7.0706 4.5196 2.3236 20 1 6.8105 4.3197 1.2946 21 6 8.3890 4.4694 2.7237 22 7 9.3300 4.1785 1.8522 23 14 8.8388 4.8159 4.5033 24 1 8.8150 3.5479 5.2759 25 1 10.1999 5.4068 4.5638 26 1 7.8593 5.7685 5.0850 27 6 2.7067 3.6502 1.9637 28 6 1.9730 2.4815 1.9079 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 -0.7092 -1.2575 33 1 1.6638 -0.2164 -2.1399 34 1 1.9410 -2.6989 -2.1019 35 1 0.4549 -2.1832 -1.2676 36 1 3.1167 -2.8750 0.0596 37 1 1.6415 -3.8720 0.0834 38 1 1.5491 -2.2601 3.4049 39 1 1.7499 -3.7959 2.5278 40 1 3.0971 -2.6356 2.6105 41 1 1.8839 -0.5608 3.2919 42 1 0.6023 0.2922 2.3985 43 1 4.0782 0.4297 3.5656 44 1 5.3991 2.5040 3.6629 45 1 3.5792 6.6178 2.7856 46 1 4.9954 6.6895 1.7096 47 1 3.5326 5.8136 1.1984 48 1 6.1781 5.8428 3.7403 49 1 5.9969 4.1138 4.1227 50 1 10.2576 4.1435 2.1337 51 1 2.3196 4.5536 1.5161 52 1 1.0116 2.4714 1.4158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231818154.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:28 Heat of formation + Delta-G solvation = 33.294226 kcal Electronic energy + Delta-G solvation = -27372.773469 eV Core-core repulsion = 23950.849252 eV Total energy + Delta-G solvation = -3421.924217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14067 -38.75618 -35.94165 -33.74555 -33.22549 -32.54338 -30.51610 -30.03576 -28.43335 -28.02505 -26.63549 -26.03598 -24.39148 -22.66686 -22.03607 -21.31339 -21.19103 -19.52866 -18.51111 -16.91946 -16.63168 -16.01784 -15.81234 -15.25180 -14.92438 -14.73673 -14.29366 -14.09388 -13.91006 -13.55910 -13.27301 -13.17339 -13.04831 -12.91970 -12.65137 -12.54732 -12.38334 -12.15507 -11.86614 -11.74519 -11.66228 -11.60588 -11.54587 -11.41806 -11.01245 -10.86803 -10.82432 -10.59149 -10.49398 -10.27325 -10.19356 -10.09636 -10.00287 -9.56004 -8.85411 -8.63874 -8.26675 -8.07874 -6.37525 -6.12552 -4.12412 2.10124 2.21447 3.23001 3.30684 3.31441 3.94916 4.08845 4.33922 4.57964 4.70697 4.77242 4.78304 4.99222 5.17734 5.18851 5.25754 5.29774 5.33425 5.34633 5.39818 5.49338 5.53961 5.56836 5.63128 5.66262 5.76784 5.80350 5.83577 5.86509 5.94367 5.97898 5.99774 6.04527 6.05795 6.12614 6.18630 6.24143 6.25626 6.34616 6.40615 6.46032 6.58107 6.77504 6.77749 7.01825 7.08991 7.21630 7.31346 7.36699 7.54884 7.57884 8.07320 8.37110 8.53679 8.95380 9.47360 11.00539 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.003242 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.847633 B = 8633.538714 C = 9111.869448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.092 0.908 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.111 4.111 7 C 0.078 3.922 8 H 0.040 0.960 9 C -0.150 4.150 10 N -0.519 5.519 11 C 0.101 3.899 12 C -0.158 4.158 13 C -0.052 4.052 14 C -0.187 4.187 15 C 0.240 3.760 16 N -0.612 5.612 17 C 0.099 3.901 18 C 0.221 3.779 19 C -0.534 4.534 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.872 3.128 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.218 4.218 28 C -0.069 4.069 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.035 0.965 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.265 0.735 51 H 0.113 0.887 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 -10.305 -1.257 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.030 4.030 3 H 0.110 0.890 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.148 4.148 7 C -0.030 4.030 8 H 0.057 0.943 9 C -0.207 4.207 10 N -0.243 5.243 11 C -0.026 4.026 12 C -0.161 4.161 13 C -0.071 4.071 14 C -0.210 4.210 15 C 0.133 3.867 16 N -0.318 5.318 17 C -0.045 4.045 18 C 0.100 3.900 19 C -0.573 4.573 20 H 0.094 0.906 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.699 3.301 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.241 4.241 28 C -0.088 4.088 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.129 0.871 44 H 0.145 0.855 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.131 0.869 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.903 -10.149 -1.285 20.619 hybrid contribution -0.350 0.293 0.762 0.888 sum -18.253 -9.856 -0.523 20.751 Atomic orbital electron populations 1.22516 0.98378 1.01884 1.01967 1.21691 0.91982 0.99208 0.90074 0.89028 1.21586 1.01787 0.95019 0.96566 1.21603 1.00335 0.96285 0.97656 1.21617 1.01910 0.97667 0.93653 1.21602 0.96783 0.89163 0.95481 0.94263 1.21947 1.02622 0.99600 0.96548 1.62178 1.59386 1.00861 1.01858 1.20974 0.96102 0.92839 0.92664 1.19157 0.97271 0.93889 1.05774 1.20612 0.93014 0.96630 0.96883 1.20820 1.01707 0.91947 1.06503 1.17900 0.89909 0.86802 0.92040 1.46693 1.19560 1.06230 1.59345 1.21479 0.99089 0.87154 0.96744 1.19643 0.80258 0.96885 0.93225 1.21484 0.90183 1.48056 0.97527 0.90569 1.24897 0.96302 0.94566 0.97235 1.69904 1.00659 1.48451 1.34264 0.86918 0.78262 0.79240 0.85721 1.19890 1.20978 1.19043 1.20511 0.96203 0.98837 1.08522 1.20520 0.98229 0.92172 0.97923 0.92556 0.92340 0.92299 0.90948 0.91926 0.92192 0.92358 0.90996 0.92096 0.92579 0.92542 0.91426 0.90284 0.94696 0.87096 0.85519 0.94629 0.91323 0.92449 0.95528 0.95520 0.92533 0.86942 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.20 37.16 0.30 -1.57 16 2 C 0.08 0.93 2.72 -67.73 -0.18 0.75 16 3 H 0.09 1.26 5.83 -51.93 -0.30 0.96 16 4 C -0.11 -1.23 5.61 -26.65 -0.15 -1.38 16 5 C -0.12 -1.14 5.69 -26.61 -0.15 -1.29 16 6 C -0.11 -1.07 5.37 -26.65 -0.14 -1.21 16 7 C 0.08 0.81 2.15 -67.72 -0.15 0.66 16 8 H 0.04 0.40 6.19 -51.93 -0.32 0.08 16 9 C -0.15 -1.42 8.56 37.16 0.32 -1.11 16 10 N -0.52 -6.38 4.40 -220.19 -0.97 -7.35 16 11 C 0.10 1.27 4.77 -4.98 -0.02 1.25 16 12 C -0.16 -2.42 5.00 -104.59 -0.52 -2.95 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 14 C -0.19 -3.75 9.21 -39.38 -0.36 -4.11 16 15 C 0.24 4.79 6.55 -83.78 -0.55 4.25 16 16 N -0.61 -12.87 2.99 -181.00 -0.54 -13.42 16 17 C 0.10 1.71 10.19 59.85 0.61 2.32 16 18 C 0.22 5.23 3.98 -5.19 -0.02 5.21 16 19 C -0.53 -14.93 9.94 -34.44 -0.34 -15.27 16 20 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 21 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 22 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 23 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 27 C -0.22 -3.74 9.21 -39.38 -0.36 -4.11 16 28 C -0.07 -1.06 8.00 -39.61 -0.32 -1.38 16 29 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.56 4.80 -51.93 -0.25 0.31 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.52 6.47 -51.93 -0.34 0.18 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.94 5.57 -51.93 -0.29 0.65 16 42 H 0.03 0.41 6.02 -51.93 -0.31 0.10 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.13 2.74 6.14 -52.49 -0.32 2.42 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 47 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 48 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 49 H 0.03 0.63 5.62 -51.93 -0.29 0.34 16 50 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.11 1.75 6.14 -52.49 -0.32 1.42 16 52 H 0.10 1.38 7.88 -52.49 -0.41 0.96 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -29.89 382.57 -10.92 -40.81 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.76 Total: 3.66 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.52 Total: -19.25 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.74 Total: -47.12 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.89 -10.92 -40.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231818154.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.105 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds