Wall clock time and date at job start Tue Mar 31 2020 11:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.44866 * 2 1 4 4 C 1.53033 * 109.46340 * 240.02731 * 2 1 3 5 5 C 1.53116 * 109.27572 * 299.16156 * 4 2 1 6 6 C 1.53120 * 109.16115 * 302.34564 * 5 4 2 7 7 C 1.53039 * 109.27788 * 57.65734 * 6 5 4 8 8 H 1.08998 * 109.45281 * 60.83162 * 7 6 5 9 9 C 1.52997 * 109.46331 * 180.80586 * 7 6 5 10 10 N 1.46842 * 109.46059 * 119.96750 * 2 1 3 11 11 C 1.46895 * 111.00501 * 294.17730 * 10 2 1 12 12 C 1.50701 * 109.47439 * 290.31121 * 11 10 2 13 13 C 1.38282 * 119.92288 * 269.72634 * 12 11 10 14 14 C 1.38109 * 120.07220 * 179.72080 * 13 12 11 15 15 C 1.38918 * 119.92316 * 0.55252 * 14 13 12 16 16 N 1.39674 * 120.07349 * 179.74980 * 15 14 13 17 17 C 1.46500 * 119.99891 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00162 * 359.96926 * 16 15 14 19 19 C 1.50703 * 109.47069 * 90.00245 * 18 16 15 20 20 H 1.08000 * 119.99638 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00045 * 180.02562 * 19 18 16 22 22 N 1.31517 * 119.99742 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99913 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47199 * 90.00553 * 23 21 19 25 25 H 1.48505 * 109.47126 * 210.00098 * 23 21 19 26 26 H 1.48500 * 109.47181 * 330.00206 * 23 21 19 27 27 C 1.38915 * 119.84997 * 359.71987 * 15 14 13 28 28 C 1.38106 * 119.92251 * 0.02562 * 27 15 14 29 29 H 1.08998 * 109.47200 * 300.03192 * 1 2 3 30 30 H 1.09003 * 109.47144 * 60.02603 * 1 2 3 31 31 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.50112 * 179.22389 * 4 2 1 33 33 H 1.08999 * 109.50718 * 59.10268 * 4 2 1 34 34 H 1.09004 * 109.52428 * 182.44369 * 5 4 2 35 35 H 1.08994 * 109.57760 * 62.28175 * 5 4 2 36 36 H 1.09002 * 109.50536 * 297.71317 * 6 5 4 37 37 H 1.09004 * 109.50676 * 177.59405 * 6 5 4 38 38 H 1.09003 * 109.47509 * 187.20136 * 9 7 6 39 39 H 1.09002 * 109.47049 * 307.19689 * 9 7 6 40 40 H 1.08996 * 109.47722 * 67.19775 * 9 7 6 41 41 H 1.09001 * 109.47742 * 170.30960 * 11 10 2 42 42 H 1.09005 * 109.46938 * 50.31028 * 11 10 2 43 43 H 1.07998 * 119.96326 * 359.96976 * 13 12 11 44 44 H 1.07997 * 120.03709 * 180.26879 * 14 13 12 45 45 H 1.09003 * 109.46771 * 89.99345 * 17 16 15 46 46 H 1.08997 * 109.46870 * 209.99524 * 17 16 15 47 47 H 1.09006 * 109.47048 * 329.99780 * 17 16 15 48 48 H 1.08994 * 109.47279 * 210.00384 * 18 16 15 49 49 H 1.09003 * 109.47132 * 330.00866 * 18 16 15 50 50 H 0.96997 * 119.99615 * 179.97438 * 22 21 19 51 51 H 1.07998 * 120.03721 * 180.02562 * 27 15 14 52 52 H 1.08002 * 119.95615 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2499 5 6 1.5443 -2.1695 -1.2355 6 6 2.0270 -2.8531 0.0468 7 6 1.5174 -2.0704 1.2592 8 1 0.4275 -2.0607 1.2531 9 6 2.0141 -2.7385 2.5428 10 7 2.0192 -0.6916 1.1994 11 6 1.6651 0.0508 2.4165 12 6 2.4684 1.3242 2.4799 13 6 3.6966 1.3341 3.1153 14 6 4.4380 2.4980 3.1703 15 6 3.9434 3.6624 2.5963 16 7 4.6883 4.8425 2.6546 17 6 4.1654 6.0694 2.0482 18 6 5.9923 4.8535 3.3221 19 6 7.0706 4.5196 2.3236 20 1 6.8105 4.3197 1.2946 21 6 8.3890 4.4694 2.7237 22 7 9.3300 4.1785 1.8522 23 14 8.8388 4.8159 4.5033 24 1 8.8150 3.5479 5.2759 25 1 10.1999 5.4068 4.5638 26 1 7.8593 5.7685 5.0850 27 6 2.7067 3.6502 1.9637 28 6 1.9730 2.4815 1.9079 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 -0.7092 -1.2575 33 1 1.6638 -0.2164 -2.1399 34 1 1.9410 -2.6989 -2.1019 35 1 0.4549 -2.1832 -1.2676 36 1 3.1167 -2.8750 0.0596 37 1 1.6415 -3.8720 0.0834 38 1 1.5491 -2.2601 3.4049 39 1 1.7499 -3.7959 2.5278 40 1 3.0971 -2.6356 2.6105 41 1 1.8839 -0.5608 3.2919 42 1 0.6023 0.2922 2.3985 43 1 4.0782 0.4297 3.5656 44 1 5.3991 2.5040 3.6629 45 1 3.5792 6.6178 2.7856 46 1 4.9954 6.6895 1.7096 47 1 3.5326 5.8136 1.1984 48 1 6.1781 5.8428 3.7403 49 1 5.9969 4.1138 4.1227 50 1 10.2576 4.1435 2.1337 51 1 2.3196 4.5536 1.5161 52 1 1.0116 2.4714 1.4158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231818154.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:28 Heat of formation + Delta-G solvation = 17.260910 kcal Electronic energy + Delta-G solvation = -27373.468726 eV Core-core repulsion = 23950.849252 eV Total energy + Delta-G solvation = -3422.619474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12915 -40.06983 -37.39576 -34.95258 -34.46678 -34.03154 -31.99007 -31.28532 -30.12318 -29.01272 -27.43553 -27.29953 -25.85199 -24.05395 -23.24390 -22.62283 -22.17128 -20.94604 -19.37624 -19.08170 -18.11745 -17.00953 -16.85008 -16.60658 -16.13664 -16.07267 -15.64157 -15.28490 -15.13605 -14.89750 -14.69583 -14.34516 -14.24790 -14.17655 -14.06307 -13.55174 -13.36926 -13.36166 -13.14573 -13.01420 -12.95944 -12.66961 -12.66791 -12.45139 -12.43429 -12.37673 -12.08241 -11.95257 -11.75495 -11.70643 -11.45260 -11.33030 -11.03759 -10.96662 -10.82351 -10.35934 -9.64717 -8.98885 -8.33577 -7.89115 -6.38933 0.70948 0.84644 1.33810 1.34821 1.45429 2.30306 2.54735 2.91961 3.00376 3.35667 3.88123 3.93758 3.96871 4.06501 4.10924 4.20099 4.28275 4.36508 4.41350 4.48396 4.53761 4.57113 4.58654 4.62057 4.66345 4.71139 4.74020 4.79275 4.80851 4.84651 4.89859 4.97972 5.02812 5.04982 5.07811 5.11985 5.14632 5.20259 5.24278 5.29467 5.31001 5.39017 5.42550 5.45663 5.59875 5.64246 5.66953 5.94996 6.09546 6.22075 6.35771 6.43776 6.60090 6.70094 6.88154 7.26590 8.84033 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.003242 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.847633 B = 8633.538714 C = 9111.869448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.110 4.110 7 C 0.078 3.922 8 H 0.051 0.949 9 C -0.148 4.148 10 N -0.537 5.537 11 C 0.105 3.895 12 C -0.147 4.147 13 C -0.059 4.059 14 C -0.216 4.216 15 C 0.210 3.790 16 N -0.630 5.630 17 C 0.098 3.902 18 C 0.233 3.767 19 C -0.537 4.537 20 H 0.023 0.977 21 C 0.012 3.988 22 N -0.946 5.946 23 Si 0.947 3.053 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.243 1.243 27 C -0.215 4.215 28 C -0.062 4.062 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.121 0.879 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.035 0.965 49 H 0.028 0.972 50 H 0.268 0.732 51 H 0.131 0.869 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.890 -11.114 -0.294 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.031 4.031 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.148 4.148 7 C -0.029 4.029 8 H 0.069 0.931 9 C -0.205 4.205 10 N -0.262 5.262 11 C -0.022 4.022 12 C -0.149 4.149 13 C -0.078 4.078 14 C -0.239 4.239 15 C 0.106 3.894 16 N -0.338 5.338 17 C -0.045 4.045 18 C 0.110 3.890 19 C -0.575 4.575 20 H 0.041 0.959 21 C -0.186 4.186 22 N -0.586 5.586 23 Si 0.769 3.231 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.166 1.166 27 C -0.238 4.238 28 C -0.081 4.081 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.046 0.954 50 H 0.077 0.923 51 H 0.149 0.851 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.082 -10.966 -0.334 23.766 hybrid contribution 0.548 0.427 0.312 0.761 sum -20.534 -10.539 -0.022 23.081 Atomic orbital electron populations 1.22427 0.96417 1.02599 1.02460 1.21653 0.93480 0.97897 0.90112 0.91396 1.21581 1.00192 0.96506 0.96793 1.21579 1.01063 0.94944 0.97804 1.21629 1.00798 0.98741 0.93637 1.21669 0.97321 0.87902 0.96033 0.93137 1.21935 1.01457 1.00748 0.96370 1.62111 1.60405 1.01917 1.01771 1.20943 0.96304 0.91573 0.93335 1.19513 0.96392 0.95391 1.03636 1.20778 0.93714 0.96033 0.97251 1.20792 1.01394 0.93554 1.08142 1.18175 0.91191 0.86470 0.93550 1.46679 1.18893 1.07779 1.60434 1.21621 0.99019 0.85954 0.97914 1.19317 0.80589 0.96901 0.92185 1.21670 0.91988 1.47734 0.96140 0.95883 1.25876 0.95992 0.94149 1.02579 1.70072 1.01245 1.50248 1.37062 0.85729 0.78386 0.79799 0.79165 1.19070 1.20471 1.16611 1.20769 0.95129 1.00337 1.07563 1.20861 0.99031 0.91313 0.96942 0.92427 0.91467 0.91429 0.93569 0.91008 0.91518 0.90978 0.92896 0.90142 0.92141 0.90812 0.93158 0.89527 0.93071 0.86134 0.88301 0.91991 0.92639 0.90911 0.94657 0.95381 0.92326 0.85102 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.20 71.98 0.59 -2.40 16 2 C 0.08 1.68 2.72 44.94 0.12 1.80 16 3 H 0.07 1.79 5.83 -2.39 -0.01 1.77 16 4 C -0.11 -2.35 5.61 30.64 0.17 -2.18 16 5 C -0.12 -1.93 5.69 30.67 0.17 -1.76 16 6 C -0.11 -1.91 5.37 30.65 0.16 -1.75 16 7 C 0.08 1.43 2.15 44.94 0.10 1.53 16 8 H 0.05 0.84 6.19 -2.39 -0.01 0.82 16 9 C -0.15 -2.50 8.56 71.98 0.62 -1.88 16 10 N -0.54 -12.32 4.40 -850.55 -3.74 -16.06 16 11 C 0.11 2.40 4.77 85.56 0.41 2.81 16 12 C -0.15 -4.31 5.00 -19.84 -0.10 -4.41 16 13 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 14 C -0.22 -8.99 9.21 22.40 0.21 -8.78 16 15 C 0.21 8.54 6.55 38.22 0.25 8.79 16 16 N -0.63 -26.94 2.99 -726.55 -2.17 -29.11 16 17 C 0.10 3.34 10.19 127.77 1.30 4.64 16 18 C 0.23 11.26 3.98 85.63 0.34 11.60 16 19 C -0.54 -31.48 9.94 25.60 0.25 -31.23 16 20 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 21 C 0.01 0.70 5.47 84.65 0.46 1.17 16 22 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 23 Si 0.95 43.58 27.47 68.60 1.88 45.47 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 27 C -0.22 -7.17 9.21 22.40 0.21 -6.96 16 28 C -0.06 -1.79 8.00 22.25 0.18 -1.62 16 29 H 0.06 0.94 6.36 -2.39 -0.02 0.93 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.01 4.80 -2.39 -0.01 1.00 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.02 6.56 -2.39 -0.02 1.01 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.06 0.96 6.47 -2.39 -0.02 0.94 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 1.87 5.57 -2.39 -0.01 1.85 16 42 H 0.05 1.03 6.02 -2.38 -0.01 1.01 16 43 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.10 4.56 6.14 -2.91 -0.02 4.54 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 47 H 0.07 2.20 6.20 -2.38 -0.01 2.19 16 48 H 0.04 1.64 7.13 -2.39 -0.02 1.62 16 49 H 0.03 1.35 5.62 -2.39 -0.01 1.34 16 50 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 51 H 0.13 3.80 6.14 -2.91 -0.02 3.78 16 52 H 0.14 3.07 7.88 -2.91 -0.02 3.05 16 Total: -1.00 -68.51 382.57 2.77 -65.74 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.84 Total: 25.93 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 5.66 Total: -32.44 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -5.62 Total: -104.70 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.47 kcal Total: -68.51 2.77 -65.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231818154.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.006 kcal (2) G-P(sol) polarization free energy of solvation -68.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds