Wall clock time and date at job start Tue Mar 31 2020 11:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.51950 * 2 1 4 4 C 1.53120 * 109.51987 * 239.81108 * 2 1 3 5 5 C 1.53042 * 109.27679 * 182.43878 * 4 2 1 6 6 N 1.46846 * 109.52384 * 59.17688 * 5 4 2 7 7 C 1.46896 * 110.99998 * 174.15789 * 6 5 4 8 8 C 1.50695 * 109.47474 * 294.21414 * 7 6 5 9 9 C 1.38292 * 119.92657 * 269.72548 * 8 7 6 10 10 C 1.38101 * 120.07295 * 179.72310 * 9 8 7 11 11 C 1.38910 * 119.92461 * 0.54968 * 10 9 8 12 12 N 1.39675 * 120.06943 * 179.70474 * 11 10 9 13 13 C 1.46507 * 119.99526 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00620 * 0.02562 * 12 11 10 15 15 C 1.50696 * 109.46638 * 89.99878 * 14 12 11 16 16 H 1.07997 * 120.00371 * 0.02562 * 15 14 12 17 17 C 1.37886 * 119.99917 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99338 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00143 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47387 * 60.00002 * 19 17 15 21 21 H 1.48506 * 109.47032 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46934 * 299.99914 * 19 17 15 23 23 C 1.38904 * 119.85062 * 359.72626 * 11 10 9 24 24 C 1.38099 * 119.93035 * 0.02562 * 23 11 10 25 25 C 1.46850 * 111.19870 * 298.26168 * 6 5 4 26 26 H 1.08998 * 109.45719 * 181.75658 * 25 6 5 27 27 C 1.53005 * 109.46089 * 301.71967 * 25 6 5 28 28 C 1.53036 * 109.52384 * 61.74019 * 25 6 5 29 29 H 1.09002 * 109.46719 * 299.87071 * 1 2 3 30 30 H 1.08996 * 109.46911 * 59.87019 * 1 2 3 31 31 H 1.08997 * 109.46978 * 179.87640 * 1 2 3 32 32 H 1.08998 * 109.50493 * 302.37621 * 4 2 1 33 33 H 1.09005 * 109.50270 * 62.50192 * 4 2 1 34 34 H 1.08993 * 109.46230 * 179.19773 * 5 4 2 35 35 H 1.09006 * 109.46257 * 299.17228 * 5 4 2 36 36 H 1.09002 * 109.47122 * 54.21627 * 7 6 5 37 37 H 1.09004 * 109.47037 * 174.21412 * 7 6 5 38 38 H 1.08000 * 119.95620 * 359.97438 * 9 8 7 39 39 H 1.08005 * 120.03292 * 180.27623 * 10 9 8 40 40 H 1.09007 * 109.47006 * 89.99892 * 13 12 11 41 41 H 1.09002 * 109.46961 * 209.99515 * 13 12 11 42 42 H 1.08991 * 109.47087 * 330.00075 * 13 12 11 43 43 H 1.08996 * 109.47081 * 210.00131 * 14 12 11 44 44 H 1.08999 * 109.46435 * 330.00412 * 14 12 11 45 45 H 0.97005 * 119.99555 * 180.02562 * 18 17 15 46 46 H 1.08009 * 120.03375 * 179.97438 * 23 11 10 47 47 H 1.08004 * 119.96971 * 179.97438 * 24 23 11 48 48 H 1.08996 * 109.46744 * 180.02562 * 27 25 6 49 49 H 1.08992 * 109.47020 * 300.05842 * 27 25 6 50 50 H 1.08994 * 109.46562 * 60.05631 * 27 25 6 51 51 H 1.09004 * 109.50109 * 60.76189 * 28 25 6 52 52 H 1.08997 * 109.49831 * 180.87683 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7257 -1.2475 5 6 3.5708 -0.7758 -1.2113 6 7 4.0103 -1.4788 0.0007 7 6 5.4671 -1.6677 0.0007 8 6 5.8530 -2.5983 -1.1200 9 6 5.9137 -3.9614 -0.8949 10 6 6.2615 -4.8175 -1.9212 11 6 6.5617 -4.3070 -3.1778 12 7 6.9198 -5.1696 -4.2163 13 6 7.2366 -4.6293 -5.5408 14 6 6.9786 -6.6144 -3.9814 15 6 5.6330 -7.2261 -4.2750 16 1 4.8160 -6.6013 -4.6041 17 6 5.4450 -8.5837 -4.1235 18 7 6.4400 -9.3445 -3.7222 19 14 3.7774 -9.3421 -4.4881 20 1 3.4164 -9.0861 -5.9056 21 1 3.8366 -10.8066 -4.2486 22 1 2.7533 -8.7367 -3.5993 23 6 6.5053 -2.9368 -3.3989 24 6 6.1518 -2.0867 -2.3695 25 6 3.5709 -0.7744 1.2120 26 1 3.9379 -1.3022 2.0922 27 6 4.1277 0.6507 1.2033 28 6 2.0418 -0.7243 1.2481 29 1 -0.3633 0.5118 0.8912 30 1 -0.3633 0.5158 -0.8888 31 1 -0.3633 -1.0276 -0.0022 32 1 1.6447 -1.7407 -1.2665 33 1 1.7161 -0.1901 -2.1393 34 1 3.9378 -1.3044 -2.0910 35 1 3.9675 0.2395 -1.2060 36 1 5.9583 -0.7050 -0.1409 37 1 5.7777 -2.0975 0.9531 38 1 5.6848 -4.3572 0.0836 39 1 6.3043 -5.8824 -1.7459 40 1 8.3031 -4.4111 -5.5986 41 1 6.9737 -5.3616 -6.3042 42 1 6.6690 -3.7135 -5.7049 43 1 7.7299 -7.0584 -4.6344 44 1 7.2441 -6.8027 -2.9411 45 1 6.3078 -10.2996 -3.6159 46 1 6.7386 -2.5366 -4.3746 47 1 6.1082 -1.0212 -2.5406 48 1 3.8019 1.1735 2.1025 49 1 5.2167 0.6151 1.1774 50 1 3.7604 1.1787 0.3233 51 1 1.6448 -1.7393 1.2683 52 1 1.7163 -0.1879 2.1394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231820589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:58 Heat of formation + Delta-G solvation = 22.054984 kcal Electronic energy + Delta-G solvation = -27010.510638 eV Core-core repulsion = 23588.099050 eV Total energy + Delta-G solvation = -3422.411588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00665 -38.73924 -36.01985 -34.47731 -32.71199 -31.99153 -30.45335 -30.25804 -28.18603 -27.74320 -26.97800 -25.51165 -24.12788 -22.94913 -22.22331 -21.49146 -21.17882 -19.52988 -18.65471 -16.62854 -16.42995 -16.16301 -15.35789 -15.26426 -14.92898 -14.48107 -14.21979 -14.14071 -13.97400 -13.68880 -13.59274 -13.24235 -12.89611 -12.83545 -12.73131 -12.48891 -12.20944 -12.09581 -11.83795 -11.81766 -11.67593 -11.43509 -11.35782 -11.22910 -11.10034 -10.95822 -10.79645 -10.64549 -10.53081 -10.25533 -10.18972 -10.13135 -9.86552 -9.72795 -8.80566 -8.48415 -8.22822 -8.10243 -6.43388 -5.99423 -4.15493 2.14660 2.25643 3.29879 3.34030 3.37812 4.00125 4.18318 4.43308 4.58513 4.66597 4.70848 4.72765 5.03434 5.09694 5.20036 5.23385 5.29912 5.32699 5.40963 5.45105 5.51378 5.55122 5.57362 5.61722 5.66023 5.71783 5.77948 5.83568 5.86069 5.88054 5.95939 6.04126 6.05288 6.10629 6.11406 6.14008 6.20184 6.29985 6.40331 6.44459 6.47764 6.67357 6.96568 7.04852 7.16852 7.24342 7.29597 7.32201 7.41875 7.64527 7.82908 8.17590 8.29451 8.51818 8.93360 9.51254 10.97459 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.003185 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.037766 B = 8789.856594 C = 9741.091403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.066 0.934 4 C -0.111 4.111 5 C 0.050 3.950 6 N -0.524 5.524 7 C 0.111 3.889 8 C -0.165 4.165 9 C -0.052 4.052 10 C -0.188 4.188 11 C 0.241 3.759 12 N -0.616 5.616 13 C 0.099 3.901 14 C 0.250 3.750 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.222 4.222 24 C -0.069 4.069 25 C 0.080 3.920 26 H 0.079 0.921 27 C -0.189 4.189 28 C -0.105 4.105 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.061 0.939 51 H 0.071 0.929 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 19.695 7.748 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.077 4.077 6 N -0.248 5.248 7 C -0.016 4.016 8 C -0.168 4.168 9 C -0.071 4.071 10 C -0.210 4.210 11 C 0.134 3.866 12 N -0.322 5.322 13 C -0.045 4.045 14 C 0.130 3.870 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.535 5.535 19 Si 0.724 3.276 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.245 4.245 24 C -0.088 4.088 25 C -0.029 4.029 26 H 0.098 0.902 27 C -0.247 4.247 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.130 0.870 47 H 0.121 0.879 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.080 0.920 51 H 0.090 0.910 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.148 18.861 7.604 20.977 hybrid contribution -0.561 0.232 -0.323 0.688 sum -5.710 19.093 7.281 21.216 Atomic orbital electron populations 1.21819 0.95427 1.01892 1.01221 1.21210 0.95289 0.99228 0.95540 0.91596 1.21644 0.95177 1.01258 0.96844 1.22155 0.95235 0.96298 0.94031 1.62151 1.12644 1.48597 1.01373 1.20809 0.86722 0.96544 0.97510 1.19139 1.09035 0.93910 0.94715 1.20624 0.96292 0.92223 0.97978 1.20888 1.07460 1.00680 0.91991 1.17937 0.90853 0.89323 0.88479 1.47093 1.70555 1.07212 1.07359 1.21462 0.98455 0.98934 0.85680 1.19269 0.96881 0.73289 0.97569 1.21550 0.97107 0.92608 1.45776 0.92316 1.24959 0.97019 0.97039 0.95019 1.69925 1.31231 1.05686 1.46620 0.86584 0.84200 0.77947 0.78903 1.20256 1.21189 1.20046 1.20507 1.12552 0.91990 0.99473 1.20491 0.98086 0.97796 0.92433 1.21683 0.95356 0.92227 0.93612 0.90248 1.22522 1.01225 0.98778 1.02211 1.21639 0.94293 1.01197 0.97125 0.93027 0.92918 0.92546 0.90998 0.92013 0.89768 0.95181 0.94938 0.90907 0.87119 0.85144 0.94685 0.91501 0.92746 0.95268 0.94627 0.92606 0.87045 0.87870 0.92455 0.92653 0.92010 0.91046 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.20 37.16 0.34 -0.87 16 2 C -0.09 -0.87 2.48 -90.50 -0.22 -1.09 16 3 H 0.07 0.59 6.56 -51.93 -0.34 0.25 16 4 C -0.11 -1.21 5.38 -26.65 -0.14 -1.35 16 5 C 0.05 0.60 4.86 -3.83 -0.02 0.59 16 6 N -0.52 -6.50 4.59 -228.12 -1.05 -7.55 16 7 C 0.11 1.42 4.58 -4.98 -0.02 1.40 16 8 C -0.17 -2.58 4.89 -104.59 -0.51 -3.09 16 9 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 10 C -0.19 -3.86 9.21 -39.38 -0.36 -4.22 16 11 C 0.24 4.92 6.55 -83.79 -0.55 4.38 16 12 N -0.62 -13.34 2.99 -181.00 -0.54 -13.88 16 13 C 0.10 1.76 10.19 59.85 0.61 2.37 16 14 C 0.25 6.32 4.91 -5.19 -0.03 6.29 16 15 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 16 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.22 -3.89 9.21 -39.39 -0.36 -4.25 16 24 C -0.07 -1.07 7.86 -39.61 -0.31 -1.38 16 25 C 0.08 0.81 2.92 -67.72 -0.20 0.62 16 26 H 0.08 0.80 8.02 -51.93 -0.42 0.39 16 27 C -0.19 -1.69 8.18 37.16 0.30 -1.38 16 28 C -0.10 -0.99 4.90 -26.65 -0.13 -1.12 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.17 5.75 -51.93 -0.30 0.87 16 35 H 0.03 0.34 6.19 -51.93 -0.32 0.02 16 36 H 0.03 0.39 6.89 -51.93 -0.36 0.03 16 37 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 2.96 6.14 -52.48 -0.32 2.64 16 40 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 43 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 44 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 46 H 0.11 1.77 6.14 -52.48 -0.32 1.44 16 47 H 0.10 1.38 7.95 -52.48 -0.42 0.96 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.05 0.51 6.77 -51.93 -0.35 0.16 16 50 H 0.06 0.57 4.80 -51.93 -0.25 0.32 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -28.55 390.73 -11.46 -40.01 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -9.06 Total: 1.91 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -2.41 Total: -17.77 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.85 Total: -46.52 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.55 -11.46 -40.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231820589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.063 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds