Wall clock time and date at job start Tue Mar 31 2020 11:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.51950 * 2 1 4 4 C 1.53120 * 109.51987 * 239.81108 * 2 1 3 5 5 C 1.53042 * 109.27679 * 182.43878 * 4 2 1 6 6 N 1.46846 * 109.52384 * 59.17688 * 5 4 2 7 7 C 1.46896 * 110.99998 * 174.15789 * 6 5 4 8 8 C 1.50695 * 109.47474 * 294.21414 * 7 6 5 9 9 C 1.38292 * 119.92657 * 269.72548 * 8 7 6 10 10 C 1.38101 * 120.07295 * 179.72310 * 9 8 7 11 11 C 1.38910 * 119.92461 * 0.54968 * 10 9 8 12 12 N 1.39675 * 120.06943 * 179.70474 * 11 10 9 13 13 C 1.46507 * 119.99526 * 180.02562 * 12 11 10 14 14 C 1.46501 * 120.00620 * 0.02562 * 12 11 10 15 15 C 1.50696 * 109.46638 * 89.99878 * 14 12 11 16 16 H 1.07997 * 120.00371 * 0.02562 * 15 14 12 17 17 C 1.37886 * 119.99917 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99338 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00143 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47387 * 60.00002 * 19 17 15 21 21 H 1.48506 * 109.47032 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46934 * 299.99914 * 19 17 15 23 23 C 1.38904 * 119.85062 * 359.72626 * 11 10 9 24 24 C 1.38099 * 119.93035 * 0.02562 * 23 11 10 25 25 C 1.46850 * 111.19870 * 298.26168 * 6 5 4 26 26 H 1.08998 * 109.45719 * 181.75658 * 25 6 5 27 27 C 1.53005 * 109.46089 * 301.71967 * 25 6 5 28 28 C 1.53036 * 109.52384 * 61.74019 * 25 6 5 29 29 H 1.09002 * 109.46719 * 299.87071 * 1 2 3 30 30 H 1.08996 * 109.46911 * 59.87019 * 1 2 3 31 31 H 1.08997 * 109.46978 * 179.87640 * 1 2 3 32 32 H 1.08998 * 109.50493 * 302.37621 * 4 2 1 33 33 H 1.09005 * 109.50270 * 62.50192 * 4 2 1 34 34 H 1.08993 * 109.46230 * 179.19773 * 5 4 2 35 35 H 1.09006 * 109.46257 * 299.17228 * 5 4 2 36 36 H 1.09002 * 109.47122 * 54.21627 * 7 6 5 37 37 H 1.09004 * 109.47037 * 174.21412 * 7 6 5 38 38 H 1.08000 * 119.95620 * 359.97438 * 9 8 7 39 39 H 1.08005 * 120.03292 * 180.27623 * 10 9 8 40 40 H 1.09007 * 109.47006 * 89.99892 * 13 12 11 41 41 H 1.09002 * 109.46961 * 209.99515 * 13 12 11 42 42 H 1.08991 * 109.47087 * 330.00075 * 13 12 11 43 43 H 1.08996 * 109.47081 * 210.00131 * 14 12 11 44 44 H 1.08999 * 109.46435 * 330.00412 * 14 12 11 45 45 H 0.97005 * 119.99555 * 180.02562 * 18 17 15 46 46 H 1.08009 * 120.03375 * 179.97438 * 23 11 10 47 47 H 1.08004 * 119.96971 * 179.97438 * 24 23 11 48 48 H 1.08996 * 109.46744 * 180.02562 * 27 25 6 49 49 H 1.08992 * 109.47020 * 300.05842 * 27 25 6 50 50 H 1.08994 * 109.46562 * 60.05631 * 27 25 6 51 51 H 1.09004 * 109.50109 * 60.76189 * 28 25 6 52 52 H 1.08997 * 109.49831 * 180.87683 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7257 -1.2475 5 6 3.5708 -0.7758 -1.2113 6 7 4.0103 -1.4788 0.0007 7 6 5.4671 -1.6677 0.0007 8 6 5.8530 -2.5983 -1.1200 9 6 5.9137 -3.9614 -0.8949 10 6 6.2615 -4.8175 -1.9212 11 6 6.5617 -4.3070 -3.1778 12 7 6.9198 -5.1696 -4.2163 13 6 7.2366 -4.6293 -5.5408 14 6 6.9786 -6.6144 -3.9814 15 6 5.6330 -7.2261 -4.2750 16 1 4.8160 -6.6013 -4.6041 17 6 5.4450 -8.5837 -4.1235 18 7 6.4400 -9.3445 -3.7222 19 14 3.7774 -9.3421 -4.4881 20 1 3.4164 -9.0861 -5.9056 21 1 3.8366 -10.8066 -4.2486 22 1 2.7533 -8.7367 -3.5993 23 6 6.5053 -2.9368 -3.3989 24 6 6.1518 -2.0867 -2.3695 25 6 3.5709 -0.7744 1.2120 26 1 3.9379 -1.3022 2.0922 27 6 4.1277 0.6507 1.2033 28 6 2.0418 -0.7243 1.2481 29 1 -0.3633 0.5118 0.8912 30 1 -0.3633 0.5158 -0.8888 31 1 -0.3633 -1.0276 -0.0022 32 1 1.6447 -1.7407 -1.2665 33 1 1.7161 -0.1901 -2.1393 34 1 3.9378 -1.3044 -2.0910 35 1 3.9675 0.2395 -1.2060 36 1 5.9583 -0.7050 -0.1409 37 1 5.7777 -2.0975 0.9531 38 1 5.6848 -4.3572 0.0836 39 1 6.3043 -5.8824 -1.7459 40 1 8.3031 -4.4111 -5.5986 41 1 6.9737 -5.3616 -6.3042 42 1 6.6690 -3.7135 -5.7049 43 1 7.7299 -7.0584 -4.6344 44 1 7.2441 -6.8027 -2.9411 45 1 6.3078 -10.2996 -3.6159 46 1 6.7386 -2.5366 -4.3746 47 1 6.1082 -1.0212 -2.5406 48 1 3.8019 1.1735 2.1025 49 1 5.2167 0.6151 1.1774 50 1 3.7604 1.1787 0.3233 51 1 1.6448 -1.7393 1.2683 52 1 1.7163 -0.1879 2.1394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231820589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:57 Heat of formation + Delta-G solvation = 8.268641 kcal Electronic energy + Delta-G solvation = -27011.108458 eV Core-core repulsion = 23588.099050 eV Total energy + Delta-G solvation = -3423.009408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99661 -40.06090 -37.45769 -35.53634 -34.69369 -32.90473 -31.90704 -31.43153 -29.72037 -29.10476 -27.69957 -26.91943 -25.62412 -24.07637 -23.57951 -22.79757 -22.16163 -20.98116 -19.46828 -18.63506 -18.08447 -17.04055 -16.91052 -16.48973 -16.16066 -15.69489 -15.45271 -15.36627 -15.16652 -14.90502 -14.56099 -14.49017 -14.31109 -14.15377 -13.97205 -13.61005 -13.39912 -13.17123 -13.09226 -12.94380 -12.85193 -12.68765 -12.65312 -12.53557 -12.53347 -12.36195 -12.21854 -11.91252 -11.87155 -11.75697 -11.41659 -11.32493 -11.03087 -10.92260 -10.64234 -10.37842 -9.63912 -9.02826 -8.35878 -7.78650 -6.37656 0.72007 0.85581 1.36343 1.38780 1.46828 2.34136 2.64149 2.94083 3.05904 3.38690 3.86517 3.90034 3.95313 4.06706 4.11971 4.23136 4.29571 4.38056 4.44149 4.44335 4.56005 4.60241 4.62220 4.67593 4.72251 4.74569 4.79949 4.85995 4.87451 4.87849 4.92763 4.95361 5.02075 5.07081 5.12022 5.14045 5.20584 5.21134 5.27346 5.32717 5.34376 5.35953 5.44679 5.59623 5.64155 5.68031 5.70406 5.95442 6.07245 6.20525 6.31491 6.40291 6.50673 6.82758 6.94867 7.34132 8.82941 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.003185 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.037766 B = 8789.856594 C = 9741.091403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.111 4.111 5 C 0.052 3.948 6 N -0.542 5.542 7 C 0.115 3.885 8 C -0.151 4.151 9 C -0.057 4.057 10 C -0.216 4.216 11 C 0.213 3.787 12 N -0.633 5.633 13 C 0.098 3.902 14 C 0.268 3.732 15 C -0.543 4.543 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.926 5.926 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.275 1.275 23 C -0.216 4.216 24 C -0.060 4.060 25 C 0.078 3.922 26 H 0.079 0.921 27 C -0.182 4.182 28 C -0.103 4.103 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.267 0.733 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.071 0.929 49 H 0.054 0.946 50 H 0.061 0.939 51 H 0.054 0.946 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 22.882 8.238 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.075 4.075 6 N -0.266 5.266 7 C -0.012 4.012 8 C -0.154 4.154 9 C -0.076 4.076 10 C -0.239 4.239 11 C 0.108 3.892 12 N -0.341 5.341 13 C -0.044 4.044 14 C 0.146 3.854 15 C -0.582 4.582 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.200 1.200 23 C -0.239 4.239 24 C -0.079 4.079 25 C -0.030 4.030 26 H 0.098 0.902 27 C -0.240 4.240 28 C -0.141 4.141 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.090 0.910 49 H 0.073 0.927 50 H 0.080 0.920 51 H 0.072 0.928 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.426 22.088 8.101 24.388 hybrid contribution -0.175 -0.656 -0.381 0.778 sum -6.601 21.433 7.719 23.717 Atomic orbital electron populations 1.21798 0.94747 1.01539 1.02085 1.21179 0.95838 0.99329 0.94417 0.90535 1.21631 0.94581 1.00352 0.98293 1.22113 0.95813 0.96577 0.93016 1.62083 1.12151 1.49899 1.02456 1.20771 0.87426 0.96506 0.96449 1.19492 1.06692 0.93361 0.95877 1.20764 0.96120 0.93115 0.97627 1.20768 1.10135 0.99357 0.93667 1.18189 0.92409 0.90536 0.88059 1.46960 1.72195 1.05761 1.09171 1.21594 0.99938 0.99333 0.83571 1.18750 0.95288 0.76007 0.95369 1.21756 0.97689 0.92998 1.45711 0.93364 1.25778 1.00646 0.97486 0.94719 1.70032 1.33185 1.06011 1.47393 0.85573 0.79601 0.77321 0.78991 1.19252 1.20238 1.20009 1.20760 1.11541 0.90598 1.01013 1.20859 0.96222 0.99233 0.91629 1.21741 0.95774 0.92992 0.92451 0.90241 1.22446 1.01038 0.97637 1.02912 1.21635 0.93818 1.00550 0.98083 0.91827 0.92420 0.93524 0.93277 0.91113 0.91823 0.93749 0.93202 0.90302 0.86268 0.88885 0.92921 0.92583 0.90375 0.97280 0.97202 0.92360 0.84989 0.84499 0.91042 0.92739 0.92024 0.92765 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.20 71.98 0.66 -1.41 16 2 C -0.09 -1.42 2.48 -10.71 -0.03 -1.45 16 3 H 0.08 1.10 6.56 -2.39 -0.02 1.09 16 4 C -0.11 -2.21 5.38 30.65 0.16 -2.05 16 5 C 0.05 1.13 4.86 86.33 0.42 1.55 16 6 N -0.54 -12.29 4.59 -875.64 -4.02 -16.31 16 7 C 0.12 2.66 4.58 85.56 0.39 3.05 16 8 C -0.15 -4.49 4.89 -19.84 -0.10 -4.59 16 9 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 10 C -0.22 -9.38 9.21 22.40 0.21 -9.17 16 11 C 0.21 8.89 6.55 38.21 0.25 9.14 16 12 N -0.63 -28.36 2.99 -726.56 -2.17 -30.53 16 13 C 0.10 3.49 10.19 127.77 1.30 4.79 16 14 C 0.27 14.38 4.91 85.63 0.42 14.80 16 15 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 16 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 17 C 0.01 0.74 5.46 84.66 0.46 1.21 16 18 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 19 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 23 C -0.22 -7.26 9.21 22.40 0.21 -7.05 16 24 C -0.06 -1.73 7.86 22.25 0.17 -1.56 16 25 C 0.08 1.40 2.92 44.94 0.13 1.53 16 26 H 0.08 1.42 8.02 -2.39 -0.02 1.40 16 27 C -0.18 -2.59 8.18 71.98 0.59 -2.00 16 28 C -0.10 -1.72 4.90 30.64 0.15 -1.57 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 1.63 5.75 -2.39 -0.01 1.61 16 35 H 0.04 0.84 6.19 -2.38 -0.01 0.82 16 36 H 0.05 1.01 6.89 -2.39 -0.02 0.99 16 37 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16 38 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 39 H 0.09 4.65 6.14 -2.91 -0.02 4.64 16 40 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.06 2.06 8.07 -2.39 -0.02 2.05 16 42 H 0.08 2.35 6.20 -2.39 -0.01 2.33 16 43 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 44 H 0.01 0.58 6.20 -2.39 -0.01 0.57 16 45 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 46 H 0.13 3.83 6.14 -2.91 -0.02 3.81 16 47 H 0.14 3.06 7.95 -2.91 -0.02 3.03 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 0.80 6.77 -2.39 -0.02 0.78 16 50 H 0.06 0.89 4.80 -2.39 -0.01 0.88 16 51 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -64.09 390.73 2.85 -61.24 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.88 Total: 21.20 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 5.86 Total: -27.56 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -5.91 Total: -101.82 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.09 2.85 -61.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231820589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.506 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds