Wall clock time and date at job start Tue Mar 31 2020 11:28:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09001 * 109.51950 * 2 1
4 4 C 1.53120 * 109.51987 * 239.81108 * 2 1 3
5 5 C 1.53042 * 109.27679 * 182.43878 * 4 2 1
6 6 N 1.46846 * 109.52384 * 59.17688 * 5 4 2
7 7 C 1.46896 * 110.99998 * 174.15789 * 6 5 4
8 8 C 1.50695 * 109.47474 * 294.21414 * 7 6 5
9 9 C 1.38292 * 119.92657 * 269.72548 * 8 7 6
10 10 C 1.38101 * 120.07295 * 179.72310 * 9 8 7
11 11 C 1.38910 * 119.92461 * 0.54968 * 10 9 8
12 12 N 1.39675 * 120.06943 * 179.70474 * 11 10 9
13 13 C 1.46507 * 119.99526 * 180.02562 * 12 11 10
14 14 C 1.46501 * 120.00620 * 0.02562 * 12 11 10
15 15 C 1.50696 * 109.46638 * 89.99878 * 14 12 11
16 16 H 1.07997 * 120.00371 * 0.02562 * 15 14 12
17 17 C 1.37886 * 119.99917 * 180.02562 * 15 14 12
18 18 N 1.31516 * 119.99338 * 0.02562 * 17 15 14
19 19 Si 1.86792 * 120.00143 * 180.02562 * 17 15 14
20 20 H 1.48499 * 109.47387 * 60.00002 * 19 17 15
21 21 H 1.48506 * 109.47032 * 180.02562 * 19 17 15
22 22 H 1.48507 * 109.46934 * 299.99914 * 19 17 15
23 23 C 1.38904 * 119.85062 * 359.72626 * 11 10 9
24 24 C 1.38099 * 119.93035 * 0.02562 * 23 11 10
25 25 C 1.46850 * 111.19870 * 298.26168 * 6 5 4
26 26 H 1.08998 * 109.45719 * 181.75658 * 25 6 5
27 27 C 1.53005 * 109.46089 * 301.71967 * 25 6 5
28 28 C 1.53036 * 109.52384 * 61.74019 * 25 6 5
29 29 H 1.09002 * 109.46719 * 299.87071 * 1 2 3
30 30 H 1.08996 * 109.46911 * 59.87019 * 1 2 3
31 31 H 1.08997 * 109.46978 * 179.87640 * 1 2 3
32 32 H 1.08998 * 109.50493 * 302.37621 * 4 2 1
33 33 H 1.09005 * 109.50270 * 62.50192 * 4 2 1
34 34 H 1.08993 * 109.46230 * 179.19773 * 5 4 2
35 35 H 1.09006 * 109.46257 * 299.17228 * 5 4 2
36 36 H 1.09002 * 109.47122 * 54.21627 * 7 6 5
37 37 H 1.09004 * 109.47037 * 174.21412 * 7 6 5
38 38 H 1.08000 * 119.95620 * 359.97438 * 9 8 7
39 39 H 1.08005 * 120.03292 * 180.27623 * 10 9 8
40 40 H 1.09007 * 109.47006 * 89.99892 * 13 12 11
41 41 H 1.09002 * 109.46961 * 209.99515 * 13 12 11
42 42 H 1.08991 * 109.47087 * 330.00075 * 13 12 11
43 43 H 1.08996 * 109.47081 * 210.00131 * 14 12 11
44 44 H 1.08999 * 109.46435 * 330.00412 * 14 12 11
45 45 H 0.97005 * 119.99555 * 180.02562 * 18 17 15
46 46 H 1.08009 * 120.03375 * 179.97438 * 23 11 10
47 47 H 1.08004 * 119.96971 * 179.97438 * 24 23 11
48 48 H 1.08996 * 109.46744 * 180.02562 * 27 25 6
49 49 H 1.08992 * 109.47020 * 300.05842 * 27 25 6
50 50 H 1.08994 * 109.46562 * 60.05631 * 27 25 6
51 51 H 1.09004 * 109.50109 * 60.76189 * 28 25 6
52 52 H 1.08997 * 109.49831 * 180.87683 * 28 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8942 1.0274 0.0000
4 6 2.0417 -0.7257 -1.2475
5 6 3.5708 -0.7758 -1.2113
6 7 4.0103 -1.4788 0.0007
7 6 5.4671 -1.6677 0.0007
8 6 5.8530 -2.5983 -1.1200
9 6 5.9137 -3.9614 -0.8949
10 6 6.2615 -4.8175 -1.9212
11 6 6.5617 -4.3070 -3.1778
12 7 6.9198 -5.1696 -4.2163
13 6 7.2366 -4.6293 -5.5408
14 6 6.9786 -6.6144 -3.9814
15 6 5.6330 -7.2261 -4.2750
16 1 4.8160 -6.6013 -4.6041
17 6 5.4450 -8.5837 -4.1235
18 7 6.4400 -9.3445 -3.7222
19 14 3.7774 -9.3421 -4.4881
20 1 3.4164 -9.0861 -5.9056
21 1 3.8366 -10.8066 -4.2486
22 1 2.7533 -8.7367 -3.5993
23 6 6.5053 -2.9368 -3.3989
24 6 6.1518 -2.0867 -2.3695
25 6 3.5709 -0.7744 1.2120
26 1 3.9379 -1.3022 2.0922
27 6 4.1277 0.6507 1.2033
28 6 2.0418 -0.7243 1.2481
29 1 -0.3633 0.5118 0.8912
30 1 -0.3633 0.5158 -0.8888
31 1 -0.3633 -1.0276 -0.0022
32 1 1.6447 -1.7407 -1.2665
33 1 1.7161 -0.1901 -2.1393
34 1 3.9378 -1.3044 -2.0910
35 1 3.9675 0.2395 -1.2060
36 1 5.9583 -0.7050 -0.1409
37 1 5.7777 -2.0975 0.9531
38 1 5.6848 -4.3572 0.0836
39 1 6.3043 -5.8824 -1.7459
40 1 8.3031 -4.4111 -5.5986
41 1 6.9737 -5.3616 -6.3042
42 1 6.6690 -3.7135 -5.7049
43 1 7.7299 -7.0584 -4.6344
44 1 7.2441 -6.8027 -2.9411
45 1 6.3078 -10.2996 -3.6159
46 1 6.7386 -2.5366 -4.3746
47 1 6.1082 -1.0212 -2.5406
48 1 3.8019 1.1735 2.1025
49 1 5.2167 0.6151 1.1774
50 1 3.7604 1.1787 0.3233
51 1 1.6448 -1.7393 1.2683
52 1 1.7163 -0.1879 2.1394
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001231820589.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:57
Heat of formation + Delta-G solvation = 8.268641 kcal
Electronic energy + Delta-G solvation = -27011.108458 eV
Core-core repulsion = 23588.099050 eV
Total energy + Delta-G solvation = -3423.009408 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.99661 -40.06090 -37.45769 -35.53634 -34.69369 -32.90473 -31.90704 -31.43153
-29.72037 -29.10476 -27.69957 -26.91943 -25.62412 -24.07637 -23.57951 -22.79757
-22.16163 -20.98116 -19.46828 -18.63506 -18.08447 -17.04055 -16.91052 -16.48973
-16.16066 -15.69489 -15.45271 -15.36627 -15.16652 -14.90502 -14.56099 -14.49017
-14.31109 -14.15377 -13.97205 -13.61005 -13.39912 -13.17123 -13.09226 -12.94380
-12.85193 -12.68765 -12.65312 -12.53557 -12.53347 -12.36195 -12.21854 -11.91252
-11.87155 -11.75697 -11.41659 -11.32493 -11.03087 -10.92260 -10.64234 -10.37842
-9.63912 -9.02826 -8.35878 -7.78650 -6.37656 0.72007 0.85581 1.36343
1.38780 1.46828 2.34136 2.64149 2.94083 3.05904 3.38690 3.86517
3.90034 3.95313 4.06706 4.11971 4.23136 4.29571 4.38056 4.44149
4.44335 4.56005 4.60241 4.62220 4.67593 4.72251 4.74569 4.79949
4.85995 4.87451 4.87849 4.92763 4.95361 5.02075 5.07081 5.12022
5.14045 5.20584 5.21134 5.27346 5.32717 5.34376 5.35953 5.44679
5.59623 5.64155 5.68031 5.70406 5.95442 6.07245 6.20525 6.31491
6.40291 6.50673 6.82758 6.94867 7.34132 8.82941
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.014003 B = 0.003185 C = 0.002874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1999.037766 B = 8789.856594 C = 9741.091403
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.089 4.089
3 H 0.076 0.924
4 C -0.111 4.111
5 C 0.052 3.948
6 N -0.542 5.542
7 C 0.115 3.885
8 C -0.151 4.151
9 C -0.057 4.057
10 C -0.216 4.216
11 C 0.213 3.787
12 N -0.633 5.633
13 C 0.098 3.902
14 C 0.268 3.732
15 C -0.543 4.543
16 H 0.048 0.952
17 C 0.013 3.987
18 N -0.926 5.926
19 Si 0.960 3.040
20 H -0.268 1.268
21 H -0.277 1.277
22 H -0.275 1.275
23 C -0.216 4.216
24 C -0.060 4.060
25 C 0.078 3.922
26 H 0.079 0.921
27 C -0.182 4.182
28 C -0.103 4.103
29 H 0.063 0.937
30 H 0.057 0.943
31 H 0.046 0.954
32 H 0.048 0.952
33 H 0.070 0.930
34 H 0.063 0.937
35 H 0.044 0.956
36 H 0.050 0.950
37 H 0.079 0.921
38 H 0.119 0.881
39 H 0.093 0.907
40 H 0.052 0.948
41 H 0.055 0.945
42 H 0.078 0.922
43 H 0.009 0.991
44 H 0.010 0.990
45 H 0.267 0.733
46 H 0.132 0.868
47 H 0.137 0.863
48 H 0.071 0.929
49 H 0.054 0.946
50 H 0.061 0.939
51 H 0.054 0.946
52 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.326 22.882 8.238 25.129
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.108 4.108
3 H 0.095 0.905
4 C -0.149 4.149
5 C -0.075 4.075
6 N -0.266 5.266
7 C -0.012 4.012
8 C -0.154 4.154
9 C -0.076 4.076
10 C -0.239 4.239
11 C 0.108 3.892
12 N -0.341 5.341
13 C -0.044 4.044
14 C 0.146 3.854
15 C -0.582 4.582
16 H 0.066 0.934
17 C -0.186 4.186
18 N -0.566 5.566
19 Si 0.785 3.215
20 H -0.193 1.193
21 H -0.202 1.202
22 H -0.200 1.200
23 C -0.239 4.239
24 C -0.079 4.079
25 C -0.030 4.030
26 H 0.098 0.902
27 C -0.240 4.240
28 C -0.141 4.141
29 H 0.082 0.918
30 H 0.076 0.924
31 H 0.065 0.935
32 H 0.067 0.933
33 H 0.089 0.911
34 H 0.082 0.918
35 H 0.063 0.937
36 H 0.068 0.932
37 H 0.097 0.903
38 H 0.137 0.863
39 H 0.111 0.889
40 H 0.071 0.929
41 H 0.074 0.926
42 H 0.096 0.904
43 H 0.027 0.973
44 H 0.028 0.972
45 H 0.076 0.924
46 H 0.150 0.850
47 H 0.155 0.845
48 H 0.090 0.910
49 H 0.073 0.927
50 H 0.080 0.920
51 H 0.072 0.928
52 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -6.426 22.088 8.101 24.388
hybrid contribution -0.175 -0.656 -0.381 0.778
sum -6.601 21.433 7.719 23.717
Atomic orbital electron populations
1.21798 0.94747 1.01539 1.02085 1.21179 0.95838 0.99329 0.94417
0.90535 1.21631 0.94581 1.00352 0.98293 1.22113 0.95813 0.96577
0.93016 1.62083 1.12151 1.49899 1.02456 1.20771 0.87426 0.96506
0.96449 1.19492 1.06692 0.93361 0.95877 1.20764 0.96120 0.93115
0.97627 1.20768 1.10135 0.99357 0.93667 1.18189 0.92409 0.90536
0.88059 1.46960 1.72195 1.05761 1.09171 1.21594 0.99938 0.99333
0.83571 1.18750 0.95288 0.76007 0.95369 1.21756 0.97689 0.92998
1.45711 0.93364 1.25778 1.00646 0.97486 0.94719 1.70032 1.33185
1.06011 1.47393 0.85573 0.79601 0.77321 0.78991 1.19252 1.20238
1.20009 1.20760 1.11541 0.90598 1.01013 1.20859 0.96222 0.99233
0.91629 1.21741 0.95774 0.92992 0.92451 0.90241 1.22446 1.01038
0.97637 1.02912 1.21635 0.93818 1.00550 0.98083 0.91827 0.92420
0.93524 0.93277 0.91113 0.91823 0.93749 0.93202 0.90302 0.86268
0.88885 0.92921 0.92583 0.90375 0.97280 0.97202 0.92360 0.84989
0.84499 0.91042 0.92739 0.92024 0.92765 0.90220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.08 9.20 71.98 0.66 -1.41 16
2 C -0.09 -1.42 2.48 -10.71 -0.03 -1.45 16
3 H 0.08 1.10 6.56 -2.39 -0.02 1.09 16
4 C -0.11 -2.21 5.38 30.65 0.16 -2.05 16
5 C 0.05 1.13 4.86 86.33 0.42 1.55 16
6 N -0.54 -12.29 4.59 -875.64 -4.02 -16.31 16
7 C 0.12 2.66 4.58 85.56 0.39 3.05 16
8 C -0.15 -4.49 4.89 -19.84 -0.10 -4.59 16
9 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16
10 C -0.22 -9.38 9.21 22.40 0.21 -9.17 16
11 C 0.21 8.89 6.55 38.21 0.25 9.14 16
12 N -0.63 -28.36 2.99 -726.56 -2.17 -30.53 16
13 C 0.10 3.49 10.19 127.77 1.30 4.79 16
14 C 0.27 14.38 4.91 85.63 0.42 14.80 16
15 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16
16 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16
17 C 0.01 0.74 5.46 84.66 0.46 1.21 16
18 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16
19 Si 0.96 44.92 29.54 68.60 2.03 46.94 16
20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16
21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16
22 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16
23 C -0.22 -7.26 9.21 22.40 0.21 -7.05 16
24 C -0.06 -1.73 7.86 22.25 0.17 -1.56 16
25 C 0.08 1.40 2.92 44.94 0.13 1.53 16
26 H 0.08 1.42 8.02 -2.39 -0.02 1.40 16
27 C -0.18 -2.59 8.18 71.98 0.59 -2.00 16
28 C -0.10 -1.72 4.90 30.64 0.15 -1.57 16
29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
31 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16
32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16
34 H 0.06 1.63 5.75 -2.39 -0.01 1.61 16
35 H 0.04 0.84 6.19 -2.38 -0.01 0.82 16
36 H 0.05 1.01 6.89 -2.39 -0.02 0.99 16
37 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16
38 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16
39 H 0.09 4.65 6.14 -2.91 -0.02 4.64 16
40 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16
41 H 0.06 2.06 8.07 -2.39 -0.02 2.05 16
42 H 0.08 2.35 6.20 -2.39 -0.01 2.33 16
43 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16
44 H 0.01 0.58 6.20 -2.39 -0.01 0.57 16
45 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16
46 H 0.13 3.83 6.14 -2.91 -0.02 3.81 16
47 H 0.14 3.06 7.95 -2.91 -0.02 3.03 16
48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
49 H 0.05 0.80 6.77 -2.39 -0.02 0.78 16
50 H 0.06 0.89 4.80 -2.39 -0.01 0.88 16
51 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
52 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
Total: -1.00 -64.09 390.73 2.85 -61.24
By element:
Atomic # 1 Polarization: 20.32 SS G_CDS: 0.88 Total: 21.20 kcal
Atomic # 6 Polarization: -33.42 SS G_CDS: 5.86 Total: -27.56 kcal
Atomic # 7 Polarization: -95.91 SS G_CDS: -5.91 Total: -101.82 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal
Total: -64.09 2.85 -61.24 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001231820589.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.506 kcal
(2) G-P(sol) polarization free energy of solvation -64.092 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.414 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.269 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds