Wall clock time and date at job start Tue Mar 31 2020 11:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99954 * 2 1 4 4 N 1.46896 * 109.47246 * 125.17712 * 3 2 1 5 5 C 1.46897 * 111.00319 * 209.30828 * 4 3 2 6 6 C 1.50696 * 109.47455 * 165.97288 * 5 4 3 7 7 C 1.38284 * 119.92614 * 286.04109 * 6 5 4 8 8 C 1.38104 * 120.07496 * 179.72549 * 7 6 5 9 9 C 1.38906 * 119.92449 * 0.54681 * 8 7 6 10 10 N 1.39681 * 120.07618 * 179.75043 * 9 8 7 11 11 C 1.46488 * 120.00044 * 179.97438 * 10 9 8 12 12 C 1.46501 * 119.99662 * 359.97407 * 10 9 8 13 13 C 1.50705 * 109.46867 * 90.00268 * 12 10 9 14 14 H 1.07993 * 119.99983 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99625 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00054 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99669 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47318 * 59.99816 * 17 15 13 19 19 H 1.48504 * 109.47003 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47270 * 300.00165 * 17 15 13 21 21 C 1.38910 * 119.85172 * 359.72857 * 9 8 7 22 22 C 1.38103 * 119.92442 * 359.97438 * 21 9 8 23 23 C 1.46907 * 110.99941 * 85.35284 * 4 3 2 24 24 C 1.53002 * 109.46987 * 205.97566 * 23 4 3 25 25 C 1.52994 * 109.47197 * 325.97823 * 23 4 3 26 26 C 1.52998 * 109.46760 * 85.97902 * 23 4 3 27 27 H 1.07998 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99778 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99884 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47050 * 5.17739 * 3 2 1 31 31 H 1.08999 * 109.46817 * 245.17490 * 3 2 1 32 32 H 1.09003 * 109.47047 * 285.97697 * 5 4 3 33 33 H 1.09002 * 109.46896 * 45.97183 * 5 4 3 34 34 H 1.08004 * 119.96178 * 359.97438 * 7 6 5 35 35 H 1.07999 * 120.03473 * 180.27332 * 8 7 6 36 36 H 1.09002 * 109.47462 * 89.99954 * 11 10 9 37 37 H 1.09002 * 109.47297 * 209.99726 * 11 10 9 38 38 H 1.09004 * 109.47599 * 330.00051 * 11 10 9 39 39 H 1.08996 * 109.46771 * 210.00045 * 12 10 9 40 40 H 1.09000 * 109.47206 * 330.00536 * 12 10 9 41 41 H 0.97004 * 119.99693 * 180.02562 * 16 15 13 42 42 H 1.07997 * 120.03775 * 179.97438 * 21 9 8 43 43 H 1.07999 * 119.96048 * 179.97438 * 22 21 9 44 44 H 1.08996 * 109.46912 * 51.27810 * 24 23 4 45 45 H 1.08998 * 109.46911 * 171.27781 * 24 23 4 46 46 H 1.08999 * 109.47109 * 291.27885 * 24 23 4 47 47 H 1.08999 * 109.47234 * 59.24087 * 25 23 4 48 48 H 1.08998 * 109.47353 * 179.24634 * 25 23 4 49 49 H 1.09004 * 109.47021 * 299.24625 * 25 23 4 50 50 H 1.08997 * 109.47501 * 68.53781 * 26 23 4 51 51 H 1.09003 * 109.46914 * 188.53947 * 26 23 4 52 52 H 1.08997 * 109.47484 * 308.53480 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9994 1.3303 1.1320 5 6 3.2244 2.7048 1.5987 6 6 3.8969 2.6739 2.9469 7 6 3.1725 2.3230 4.0713 8 6 3.7871 2.2881 5.3075 9 6 5.1317 2.6172 5.4224 10 7 5.7552 2.5881 6.6720 11 6 7.1735 2.9349 6.7912 12 6 4.9908 2.2107 7.8634 13 6 5.0790 0.7199 8.0654 14 1 5.6472 0.1142 7.3752 15 6 4.4341 0.1294 9.1315 16 7 3.7417 0.8671 9.9717 17 14 4.5428 -1.7186 9.3815 18 1 5.9639 -2.1113 9.5595 19 1 3.7680 -2.1011 10.5893 20 1 3.9826 -2.4126 8.1942 21 6 5.8551 2.9749 4.2917 22 6 5.2358 3.0017 3.0576 23 6 4.2685 0.6792 0.7805 24 6 4.9356 0.1439 2.0491 25 6 3.9980 -0.4794 -0.1814 26 6 5.1936 1.6953 0.1077 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3589 2.1314 0.0927 31 1 2.6188 1.4040 -0.9327 32 1 3.8611 3.2305 0.8870 33 1 2.2682 3.2216 1.6813 34 1 2.1259 2.0719 3.9820 35 1 3.2218 2.0097 6.1846 36 1 7.2720 4.0056 6.9701 37 1 7.6132 2.3855 7.6236 38 1 7.6908 2.6717 5.8685 39 1 5.4013 2.7204 8.7350 40 1 3.9477 2.4985 7.7320 41 1 3.2884 0.4516 10.7220 42 1 6.9006 3.2317 4.3777 43 1 5.7976 3.2801 2.1782 44 1 4.2204 -0.4585 2.6091 45 1 5.7936 -0.4707 1.7767 46 1 5.2680 0.9794 2.6651 47 1 3.5106 -0.0999 -1.0794 48 1 4.9410 -0.9541 -0.4528 49 1 3.3497 -1.2098 0.3028 50 1 5.5080 2.4402 0.8387 51 1 6.0700 1.1822 -0.2883 52 1 4.6619 2.1873 -0.7067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231821792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:55 Heat of formation + Delta-G solvation = 79.048107 kcal Electronic energy + Delta-G solvation = -27584.406466 eV Core-core repulsion = 24164.466285 eV Total energy + Delta-G solvation = -3419.940180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.09355 -38.47444 -35.72398 -34.21539 -32.83747 -32.25375 -30.53120 -29.82534 -27.81827 -27.68212 -27.12281 -25.86905 -24.70953 -23.61564 -22.15379 -21.48954 -20.07814 -19.59707 -18.52681 -16.67412 -16.41069 -16.26674 -15.58111 -15.12472 -15.02674 -14.47529 -14.35798 -14.19035 -13.73578 -13.65257 -13.36297 -13.19893 -12.94358 -12.67978 -12.44620 -12.35132 -12.13607 -12.05010 -11.93895 -11.52494 -11.44776 -11.39823 -11.31839 -11.16311 -10.96598 -10.82487 -10.69956 -10.64159 -10.58259 -10.40125 -10.21115 -9.81031 -9.68462 -9.43235 -8.68415 -8.48028 -8.18252 -8.10530 -6.41869 -5.98718 -4.15032 2.12920 2.17931 2.35861 3.29920 3.34212 3.37889 4.03380 4.18447 4.43550 4.62898 4.79927 4.87280 4.96134 5.14872 5.18443 5.22975 5.23962 5.34461 5.38763 5.49270 5.54938 5.58799 5.61565 5.71528 5.75127 5.79663 5.85099 5.85801 6.02314 6.05075 6.07939 6.11479 6.13669 6.15469 6.30366 6.39548 6.44073 6.48442 6.60339 6.68923 6.73733 6.77427 6.97581 7.04408 7.17021 7.25578 7.30710 7.33734 7.45421 7.64555 7.83244 8.17984 8.29830 8.52326 8.93750 9.51754 10.97860 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.003686 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.989995 B = 7594.347782 C = 8530.527314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C 0.076 3.924 4 N -0.518 5.518 5 C 0.103 3.897 6 C -0.158 4.158 7 C -0.047 4.047 8 C -0.188 4.188 9 C 0.241 3.759 10 N -0.616 5.616 11 C 0.099 3.901 12 C 0.250 3.750 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.224 4.224 22 C -0.072 4.072 23 C 0.111 3.889 24 C -0.149 4.149 25 C -0.156 4.156 26 C -0.185 4.185 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.034 0.966 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.264 0.736 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.056 0.944 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 2.751 -20.107 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C -0.051 4.051 4 N -0.242 5.242 5 C -0.024 4.024 6 C -0.161 4.161 7 C -0.067 4.067 8 C -0.211 4.211 9 C 0.134 3.866 10 N -0.322 5.322 11 C -0.045 4.045 12 C 0.130 3.870 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.247 4.247 22 C -0.091 4.091 23 C 0.022 3.978 24 C -0.207 4.207 25 C -0.213 4.213 26 C -0.243 4.243 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.148 0.852 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.075 0.925 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.202 2.481 -19.312 19.472 hybrid contribution 0.423 -0.769 -0.324 0.936 sum 0.222 1.712 -19.636 19.712 Atomic orbital electron populations 1.23777 0.95981 1.01472 1.02288 1.23357 0.95730 0.98855 0.98199 1.21283 0.95020 0.95833 0.93011 1.62347 1.10994 1.17828 1.32990 1.20993 0.99433 0.88347 0.93605 1.19073 0.94045 1.09053 0.93975 1.20584 0.98874 0.95905 0.91319 1.20890 0.93980 1.07730 0.98457 1.17932 0.91779 0.91406 0.85463 1.47082 1.08983 1.70367 1.05755 1.21456 0.82941 0.98598 1.01529 1.19264 0.91655 0.95035 0.81018 1.21542 1.31925 0.92818 1.10710 0.92327 1.24946 0.95012 0.98349 0.95653 1.69920 1.32754 1.35627 1.15140 0.86598 0.78146 0.85356 0.77618 1.20271 1.21197 1.20066 1.20498 0.99588 1.12567 0.92021 1.20530 0.93886 0.98676 0.95968 1.20989 0.88431 0.93288 0.95068 1.22186 0.99257 1.02427 0.96795 1.22430 1.01708 0.98346 0.98779 1.22669 1.00149 1.00684 1.00846 0.89012 0.88738 0.86443 0.91189 0.93438 0.93940 0.91096 0.87082 0.85229 0.94712 0.91531 0.92754 0.95313 0.94643 0.92617 0.87056 0.87407 0.92134 0.93768 0.89757 0.92349 0.92677 0.91307 0.90734 0.92494 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 14.32 29.01 0.42 -1.49 16 2 C -0.14 -1.48 8.56 -36.03 -0.31 -1.79 16 3 C 0.08 0.79 4.98 -4.98 -0.02 0.76 16 4 N -0.52 -6.34 4.26 -221.84 -0.94 -7.28 16 5 C 0.10 1.28 4.72 -4.98 -0.02 1.26 16 6 C -0.16 -2.38 3.45 -104.59 -0.36 -2.74 16 7 C -0.05 -0.82 9.73 -39.61 -0.39 -1.21 16 8 C -0.19 -3.80 9.21 -39.38 -0.36 -4.17 16 9 C 0.24 4.82 6.55 -83.79 -0.55 4.27 16 10 N -0.62 -13.16 2.99 -181.00 -0.54 -13.70 16 11 C 0.10 1.74 10.19 59.84 0.61 2.35 16 12 C 0.25 6.29 4.91 -5.19 -0.03 6.26 16 13 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.22 -3.79 9.12 -39.38 -0.36 -4.15 16 22 C -0.07 -1.07 6.58 -39.61 -0.26 -1.33 16 23 C 0.11 1.31 0.68 -131.60 -0.09 1.22 16 24 C -0.15 -2.12 8.07 37.16 0.30 -1.82 16 25 C -0.16 -1.59 6.82 37.15 0.25 -1.33 16 26 C -0.19 -1.95 7.08 37.16 0.26 -1.69 16 27 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 28 H 0.09 0.83 8.06 -52.49 -0.42 0.40 16 29 H 0.12 1.21 5.03 -52.49 -0.26 0.94 16 30 H 0.07 0.69 7.15 -51.93 -0.37 0.32 16 31 H 0.05 0.46 5.78 -51.93 -0.30 0.16 16 32 H 0.04 0.48 5.48 -51.93 -0.28 0.20 16 33 H 0.07 0.85 7.67 -51.93 -0.40 0.45 16 34 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.13 2.93 6.14 -52.49 -0.32 2.61 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.05 0.84 6.20 -51.93 -0.32 0.52 16 39 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.11 1.72 6.14 -52.49 -0.32 1.40 16 43 H 0.11 1.37 5.81 -52.49 -0.30 1.06 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.58 8.13 -51.93 -0.42 0.15 16 46 H 0.08 1.32 3.73 -51.93 -0.19 1.12 16 47 H 0.06 0.54 5.64 -51.93 -0.29 0.25 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.73 5.94 -51.93 -0.31 0.43 16 50 H 0.07 0.83 3.46 -51.93 -0.18 0.65 16 51 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 52 H 0.05 0.47 7.18 -51.93 -0.37 0.10 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -28.34 385.68 -9.60 -37.94 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.31 Total: 4.63 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -1.33 Total: -18.83 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.75 Total: -46.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.34 -9.60 -37.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231821792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.991 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds