Wall clock time and date at job start Tue Mar 31 2020 11:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99954 * 2 1 4 4 N 1.46896 * 109.47246 * 125.17712 * 3 2 1 5 5 C 1.46897 * 111.00319 * 209.30828 * 4 3 2 6 6 C 1.50696 * 109.47455 * 165.97288 * 5 4 3 7 7 C 1.38284 * 119.92614 * 286.04109 * 6 5 4 8 8 C 1.38104 * 120.07496 * 179.72549 * 7 6 5 9 9 C 1.38906 * 119.92449 * 0.54681 * 8 7 6 10 10 N 1.39681 * 120.07618 * 179.75043 * 9 8 7 11 11 C 1.46488 * 120.00044 * 179.97438 * 10 9 8 12 12 C 1.46501 * 119.99662 * 359.97407 * 10 9 8 13 13 C 1.50705 * 109.46867 * 90.00268 * 12 10 9 14 14 H 1.07993 * 119.99983 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99625 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00054 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99669 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47318 * 59.99816 * 17 15 13 19 19 H 1.48504 * 109.47003 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47270 * 300.00165 * 17 15 13 21 21 C 1.38910 * 119.85172 * 359.72857 * 9 8 7 22 22 C 1.38103 * 119.92442 * 359.97438 * 21 9 8 23 23 C 1.46907 * 110.99941 * 85.35284 * 4 3 2 24 24 C 1.53002 * 109.46987 * 205.97566 * 23 4 3 25 25 C 1.52994 * 109.47197 * 325.97823 * 23 4 3 26 26 C 1.52998 * 109.46760 * 85.97902 * 23 4 3 27 27 H 1.07998 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99778 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99884 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47050 * 5.17739 * 3 2 1 31 31 H 1.08999 * 109.46817 * 245.17490 * 3 2 1 32 32 H 1.09003 * 109.47047 * 285.97697 * 5 4 3 33 33 H 1.09002 * 109.46896 * 45.97183 * 5 4 3 34 34 H 1.08004 * 119.96178 * 359.97438 * 7 6 5 35 35 H 1.07999 * 120.03473 * 180.27332 * 8 7 6 36 36 H 1.09002 * 109.47462 * 89.99954 * 11 10 9 37 37 H 1.09002 * 109.47297 * 209.99726 * 11 10 9 38 38 H 1.09004 * 109.47599 * 330.00051 * 11 10 9 39 39 H 1.08996 * 109.46771 * 210.00045 * 12 10 9 40 40 H 1.09000 * 109.47206 * 330.00536 * 12 10 9 41 41 H 0.97004 * 119.99693 * 180.02562 * 16 15 13 42 42 H 1.07997 * 120.03775 * 179.97438 * 21 9 8 43 43 H 1.07999 * 119.96048 * 179.97438 * 22 21 9 44 44 H 1.08996 * 109.46912 * 51.27810 * 24 23 4 45 45 H 1.08998 * 109.46911 * 171.27781 * 24 23 4 46 46 H 1.08999 * 109.47109 * 291.27885 * 24 23 4 47 47 H 1.08999 * 109.47234 * 59.24087 * 25 23 4 48 48 H 1.08998 * 109.47353 * 179.24634 * 25 23 4 49 49 H 1.09004 * 109.47021 * 299.24625 * 25 23 4 50 50 H 1.08997 * 109.47501 * 68.53781 * 26 23 4 51 51 H 1.09003 * 109.46914 * 188.53947 * 26 23 4 52 52 H 1.08997 * 109.47484 * 308.53480 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9994 1.3303 1.1320 5 6 3.2244 2.7048 1.5987 6 6 3.8969 2.6739 2.9469 7 6 3.1725 2.3230 4.0713 8 6 3.7871 2.2881 5.3075 9 6 5.1317 2.6172 5.4224 10 7 5.7552 2.5881 6.6720 11 6 7.1735 2.9349 6.7912 12 6 4.9908 2.2107 7.8634 13 6 5.0790 0.7199 8.0654 14 1 5.6472 0.1142 7.3752 15 6 4.4341 0.1294 9.1315 16 7 3.7417 0.8671 9.9717 17 14 4.5428 -1.7186 9.3815 18 1 5.9639 -2.1113 9.5595 19 1 3.7680 -2.1011 10.5893 20 1 3.9826 -2.4126 8.1942 21 6 5.8551 2.9749 4.2917 22 6 5.2358 3.0017 3.0576 23 6 4.2685 0.6792 0.7805 24 6 4.9356 0.1439 2.0491 25 6 3.9980 -0.4794 -0.1814 26 6 5.1936 1.6953 0.1077 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3589 2.1314 0.0927 31 1 2.6188 1.4040 -0.9327 32 1 3.8611 3.2305 0.8870 33 1 2.2682 3.2216 1.6813 34 1 2.1259 2.0719 3.9820 35 1 3.2218 2.0097 6.1846 36 1 7.2720 4.0056 6.9701 37 1 7.6132 2.3855 7.6236 38 1 7.6908 2.6717 5.8685 39 1 5.4013 2.7204 8.7350 40 1 3.9477 2.4985 7.7320 41 1 3.2884 0.4516 10.7220 42 1 6.9006 3.2317 4.3777 43 1 5.7976 3.2801 2.1782 44 1 4.2204 -0.4585 2.6091 45 1 5.7936 -0.4707 1.7767 46 1 5.2680 0.9794 2.6651 47 1 3.5106 -0.0999 -1.0794 48 1 4.9410 -0.9541 -0.4528 49 1 3.3497 -1.2098 0.3028 50 1 5.5080 2.4402 0.8387 51 1 6.0700 1.1822 -0.2883 52 1 4.6619 2.1873 -0.7067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231821792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:54 Heat of formation + Delta-G solvation = 65.020347 kcal Electronic energy + Delta-G solvation = -27585.014755 eV Core-core repulsion = 24164.466285 eV Total energy + Delta-G solvation = -3420.548470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18431 -39.75572 -37.21038 -35.09597 -34.76275 -33.39741 -31.92280 -31.09995 -29.57846 -28.68450 -28.10827 -27.08007 -26.09092 -24.92320 -23.61553 -22.94043 -21.23285 -20.64778 -19.49200 -18.63012 -18.07442 -17.21838 -16.80126 -16.49169 -16.12321 -15.99005 -15.72572 -15.32203 -15.11201 -14.73518 -14.65603 -14.37870 -14.25700 -14.03457 -13.77263 -13.57151 -13.31504 -13.19335 -13.07510 -13.02561 -12.85263 -12.67206 -12.58156 -12.45576 -12.34082 -12.29401 -12.08455 -11.94451 -11.79530 -11.69982 -11.51500 -11.36921 -11.18754 -10.63560 -10.28607 -10.12157 -9.55533 -9.00106 -8.34452 -7.74691 -6.36763 0.74934 0.88727 1.35967 1.38402 1.46268 1.49723 2.34339 2.66301 3.00254 3.06703 3.37575 3.95987 3.99271 4.07183 4.12255 4.19802 4.27752 4.33967 4.41402 4.45401 4.52606 4.54545 4.67897 4.71320 4.72704 4.78121 4.81412 4.84840 4.88622 4.93902 4.94249 5.00536 5.03940 5.09115 5.11397 5.12531 5.21528 5.25879 5.32031 5.37066 5.48563 5.59188 5.63617 5.71529 5.73350 5.85109 5.95642 5.99247 6.08242 6.23901 6.38587 6.40372 6.52492 6.84222 6.97782 7.35064 8.83546 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.003686 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.989995 B = 7594.347782 C = 8530.527314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.080 3.920 4 N -0.536 5.536 5 C 0.105 3.895 6 C -0.140 4.140 7 C -0.052 4.052 8 C -0.216 4.216 9 C 0.214 3.786 10 N -0.633 5.633 11 C 0.099 3.901 12 C 0.269 3.731 13 C -0.541 4.541 14 H 0.048 0.952 15 C 0.014 3.986 16 N -0.926 5.926 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.276 1.276 21 C -0.217 4.217 22 C -0.061 4.061 23 C 0.112 3.888 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.181 4.181 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.267 0.733 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.031 0.969 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 2.746 -23.472 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.175 4.175 3 C -0.047 4.047 4 N -0.260 5.260 5 C -0.022 4.022 6 C -0.143 4.143 7 C -0.072 4.072 8 C -0.239 4.239 9 C 0.109 3.891 10 N -0.341 5.341 11 C -0.044 4.044 12 C 0.147 3.853 13 C -0.580 4.580 14 H 0.066 0.934 15 C -0.185 4.185 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.201 1.201 21 C -0.239 4.239 22 C -0.079 4.079 23 C 0.022 3.978 24 C -0.204 4.204 25 C -0.208 4.208 26 C -0.239 4.239 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.161 0.839 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.741 2.487 -22.717 22.865 hybrid contribution 0.068 -0.757 0.602 0.970 sum 0.809 1.730 -22.115 22.197 Atomic orbital electron populations 1.23935 0.95967 1.02151 1.01368 1.23424 0.96047 0.98971 0.99047 1.21291 0.94750 0.95956 0.92725 1.62215 1.11678 1.17568 1.34513 1.21004 0.99991 0.89034 0.92181 1.19387 0.94125 1.06245 0.94553 1.20641 0.99194 0.96195 0.91138 1.20731 0.94628 1.10247 0.98323 1.18164 0.91919 0.93131 0.85884 1.46934 1.10165 1.71889 1.05106 1.21583 0.80993 0.99488 1.02337 1.18727 0.90702 0.93739 0.82149 1.21752 1.31720 0.93983 1.10539 0.93363 1.25750 0.94569 1.02838 0.95353 1.70029 1.33480 1.37467 1.15649 0.85601 0.78593 0.79885 0.77574 1.19226 1.20279 1.20110 1.20747 1.00382 1.11301 0.91494 1.20902 0.93846 0.96874 0.96317 1.20965 0.88456 0.94228 0.94103 1.22151 0.99056 1.01559 0.97681 1.22384 1.02084 0.97619 0.98752 1.22605 1.00249 1.00131 1.00934 0.88351 0.88162 0.86669 0.90571 0.92056 0.91768 0.90381 0.86958 0.89276 0.92984 0.92699 0.90318 0.97388 0.97320 0.92407 0.85022 0.83889 0.95008 0.92943 0.91272 0.90987 0.91903 0.92270 0.91202 0.91573 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.43 14.32 67.78 0.97 -2.46 16 2 C -0.16 -2.93 8.56 25.64 0.22 -2.71 16 3 C 0.08 1.41 4.98 85.56 0.43 1.84 16 4 N -0.54 -11.79 4.26 -855.76 -3.64 -15.43 16 5 C 0.10 2.29 4.72 85.56 0.40 2.69 16 6 C -0.14 -3.97 3.45 -19.84 -0.07 -4.04 16 7 C -0.05 -1.85 9.73 22.25 0.22 -1.64 16 8 C -0.22 -9.30 9.21 22.40 0.21 -9.09 16 9 C 0.21 8.75 6.55 38.21 0.25 9.00 16 10 N -0.63 -28.06 2.99 -726.57 -2.17 -30.23 16 11 C 0.10 3.47 10.19 127.77 1.30 4.77 16 12 C 0.27 14.39 4.91 85.63 0.42 14.81 16 13 C -0.54 -31.03 9.39 25.60 0.24 -30.78 16 14 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 15 C 0.01 0.81 5.46 84.66 0.46 1.27 16 16 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 17 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 C -0.22 -7.00 9.12 22.40 0.20 -6.80 16 22 C -0.06 -1.64 6.58 22.25 0.15 -1.50 16 23 C 0.11 2.32 0.68 3.52 0.00 2.32 16 24 C -0.15 -3.98 8.07 71.98 0.58 -3.40 16 25 C -0.15 -2.69 6.82 71.98 0.49 -2.20 16 26 C -0.18 -3.05 7.08 71.98 0.51 -2.54 16 27 H 0.10 1.57 7.84 -2.91 -0.02 1.54 16 28 H 0.10 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.12 2.19 5.03 -2.91 -0.01 2.18 16 30 H 0.08 1.26 7.15 -2.39 -0.02 1.25 16 31 H 0.06 0.93 5.78 -2.39 -0.01 0.92 16 32 H 0.06 1.16 5.48 -2.39 -0.01 1.15 16 33 H 0.08 1.63 7.67 -2.39 -0.02 1.62 16 34 H 0.11 3.83 8.06 -2.91 -0.02 3.80 16 35 H 0.09 4.48 6.14 -2.91 -0.02 4.46 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 2.01 8.07 -2.39 -0.02 1.99 16 38 H 0.08 2.32 6.20 -2.38 -0.01 2.31 16 39 H 0.01 0.46 8.07 -2.39 -0.02 0.44 16 40 H 0.01 0.51 6.20 -2.39 -0.01 0.50 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.13 3.68 6.14 -2.91 -0.02 3.67 16 43 H 0.14 2.94 5.81 -2.91 -0.02 2.93 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 46 H 0.07 2.05 3.73 -2.39 -0.01 2.04 16 47 H 0.07 1.09 5.64 -2.39 -0.01 1.07 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 1.17 5.94 -2.38 -0.01 1.16 16 50 H 0.07 1.22 3.46 -2.39 -0.01 1.21 16 51 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 52 H 0.06 0.91 7.18 -2.39 -0.02 0.89 16 Total: -1.00 -64.29 385.68 4.38 -59.90 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.90 Total: 24.22 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 6.98 Total: -30.45 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -5.53 Total: -100.69 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.29 4.38 -59.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231821792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.924 kcal (2) G-P(sol) polarization free energy of solvation -64.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds