Wall clock time and date at job start Tue Mar 31 2020 11:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46644 * 2 1 4 4 C 1.52999 * 109.47443 * 239.99689 * 2 1 3 5 5 C 1.50697 * 109.46924 * 119.99668 * 2 1 3 6 6 C 1.38218 * 119.62078 * 75.25716 * 5 2 1 7 7 C 1.38635 * 119.16489 * 180.26726 * 6 5 2 8 8 C 1.50700 * 120.79252 * 179.75783 * 7 6 5 9 9 N 1.46901 * 109.47119 * 269.07205 * 8 7 6 10 10 C 1.46899 * 111.00250 * 199.83374 * 9 8 7 11 11 C 1.50698 * 109.47082 * 178.27278 * 10 9 8 12 12 H 1.07996 * 120.00609 * 354.64668 * 11 10 9 13 13 C 1.37878 * 119.99677 * 174.64996 * 11 10 9 14 14 N 1.31521 * 120.00068 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00151 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47205 * 89.99652 * 15 13 11 17 17 H 1.48496 * 109.47262 * 209.99560 * 15 13 11 18 18 H 1.48500 * 109.47156 * 330.00012 * 15 13 11 19 19 C 1.46904 * 111.00019 * 75.88002 * 9 8 7 20 20 C 1.54257 * 110.03415 * 218.16885 * 19 9 8 21 21 C 1.54969 * 104.16285 * 217.13492 * 20 19 9 22 22 C 1.54900 * 102.77370 * 37.88879 * 21 20 19 23 23 C 1.53878 * 110.02805 * 100.94878 * 19 9 8 24 24 C 1.38673 * 118.41784 * 359.48957 * 7 6 5 25 25 C 1.38186 * 119.16023 * 0.24327 * 24 7 6 26 26 N 1.31860 * 119.61925 * 255.00202 * 5 2 1 27 27 H 1.08992 * 109.47598 * 299.99926 * 1 2 3 28 28 H 1.08997 * 109.47133 * 60.00579 * 1 2 3 29 29 H 1.09003 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46916 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46883 * 299.99574 * 3 2 1 32 32 H 1.08995 * 109.47496 * 59.99480 * 3 2 1 33 33 H 1.09001 * 109.46817 * 300.00022 * 4 2 1 34 34 H 1.09004 * 109.46883 * 60.00023 * 4 2 1 35 35 H 1.08997 * 109.46989 * 179.97438 * 4 2 1 36 36 H 1.08003 * 120.42257 * 0.02562 * 6 5 2 37 37 H 1.08997 * 109.46816 * 149.07652 * 8 7 6 38 38 H 1.08996 * 109.46886 * 29.07142 * 8 7 6 39 39 H 1.09000 * 109.47113 * 298.27957 * 10 9 8 40 40 H 1.09000 * 109.46598 * 58.27595 * 10 9 8 41 41 H 0.97002 * 120.00046 * 179.97438 * 14 13 11 42 42 H 1.09005 * 110.01419 * 339.56351 * 19 9 8 43 43 H 1.09002 * 110.49097 * 335.78334 * 20 19 9 44 44 H 1.09004 * 110.48843 * 98.42966 * 20 19 9 45 45 H 1.08993 * 110.72245 * 279.57866 * 21 20 19 46 46 H 1.08998 * 110.92313 * 156.29405 * 21 20 19 47 47 H 1.08991 * 110.48691 * 203.40350 * 22 21 20 48 48 H 1.08998 * 110.59330 * 80.81480 * 22 21 20 49 49 H 1.09001 * 110.03312 * 238.56564 * 23 19 9 50 50 H 1.08996 * 110.03363 * 0.02562 * 23 19 9 51 51 H 1.07999 * 120.41940 * 180.22555 * 24 7 6 52 52 H 1.08004 * 119.61617 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.9717 -2.0896 1.2956 7 6 2.4312 -2.7331 2.4344 8 6 2.3775 -4.2349 2.5467 9 7 1.1053 -4.6346 3.1629 10 6 1.1918 -5.9929 3.7156 11 6 -0.1150 -6.3511 4.3750 12 1 -0.8979 -5.6120 4.4593 13 6 -0.3113 -7.6226 4.8708 14 7 0.6419 -8.5230 4.7678 15 14 -1.9314 -8.0670 5.6876 16 1 -2.8744 -8.5883 4.6656 17 1 -1.6960 -9.1076 6.7205 18 1 -2.5119 -6.8583 6.3258 19 6 -0.0015 -4.5264 2.2031 20 6 -1.2680 -4.0058 2.9133 21 6 -2.4270 -4.7842 2.2408 22 6 -1.8175 -6.1928 2.0316 23 6 -0.3505 -5.9162 1.6422 24 6 2.9468 -1.9621 3.4654 25 6 2.9803 -0.5877 3.3265 26 7 2.5292 -0.0091 2.2306 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2493 36 1 1.5678 -2.6589 0.4714 37 1 3.2054 -4.5828 3.1644 38 1 2.4546 -4.6765 1.5532 39 1 1.3992 -6.6996 2.9121 40 1 1.9940 -6.0349 4.4524 41 1 0.5040 -9.4174 5.1170 42 1 0.2739 -3.8542 1.3903 43 1 -1.2267 -4.2292 3.9794 44 1 -1.3829 -2.9340 2.7514 45 1 -2.6918 -4.3321 1.2851 46 1 -3.2957 -4.8329 2.8973 47 1 -2.3336 -6.7161 1.2268 48 1 -1.8647 -6.7718 2.9538 49 1 -0.2456 -5.9182 0.5573 50 1 0.3010 -6.6709 2.0826 51 1 3.3171 -2.4300 4.3656 52 1 3.3799 0.0199 4.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232215674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:45 Heat of formation + Delta-G solvation = 38.553240 kcal Electronic energy + Delta-G solvation = -28199.050070 eV Core-core repulsion = 24777.353901 eV Total energy + Delta-G solvation = -3421.696170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44325 -38.72708 -36.65053 -34.68514 -32.99275 -31.83808 -30.24937 -28.17647 -27.70674 -27.32491 -27.19545 -26.89895 -24.40799 -23.38441 -22.23422 -21.58029 -19.89227 -19.10398 -18.13792 -16.69487 -16.20940 -16.16728 -15.31798 -15.27454 -15.06514 -14.51653 -14.42893 -14.19641 -13.84164 -13.78358 -13.20411 -13.04217 -13.01706 -12.52967 -12.28910 -12.22692 -11.98869 -11.85617 -11.73664 -11.69013 -11.20416 -11.02469 -11.00699 -10.92564 -10.87408 -10.80320 -10.63491 -10.44602 -10.26863 -10.14735 -9.97705 -9.68171 -9.26660 -9.24255 -9.09320 -8.82347 -8.70651 -8.41453 -7.21804 -6.06335 -4.02770 1.36207 1.53889 3.26971 3.35317 3.38290 3.96873 4.26123 4.39319 4.62835 4.92024 4.95948 4.98053 5.09856 5.15264 5.28137 5.32050 5.41960 5.46575 5.48978 5.52790 5.61708 5.67380 5.71852 5.77402 5.80292 5.81360 5.87288 5.91124 6.01839 6.08530 6.08947 6.13298 6.23791 6.27604 6.29499 6.35461 6.41181 6.42475 6.54871 6.64756 6.71262 6.71755 6.84145 6.95961 6.96387 6.99533 7.32685 7.37936 7.58147 7.89411 8.04378 8.15703 8.21029 8.50839 9.03511 9.57600 11.04945 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.003867 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.385407 B = 7239.906209 C = 7891.347661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.018 4.018 3 C -0.124 4.124 4 C -0.141 4.141 5 C 0.135 3.865 6 C -0.163 4.163 7 C -0.011 4.011 8 C 0.085 3.915 9 N -0.525 5.525 10 C 0.186 3.814 11 C -0.501 4.501 12 H 0.080 0.920 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.882 3.118 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.272 1.272 19 C 0.097 3.903 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.157 4.157 24 C -0.158 4.158 25 C 0.094 3.906 26 N -0.488 5.488 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.009 0.991 40 H 0.026 0.974 41 H 0.260 0.740 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.041 0.959 45 H 0.048 0.952 46 H 0.054 0.946 47 H 0.037 0.963 48 H 0.091 0.909 49 H 0.030 0.970 50 H 0.111 0.889 51 H 0.133 0.867 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 13.816 -9.418 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 C -0.182 4.182 4 C -0.198 4.198 5 C -0.003 4.003 6 C -0.183 4.183 7 C -0.020 4.020 8 C -0.044 4.044 9 N -0.249 5.249 10 C 0.062 3.938 11 C -0.540 4.540 12 H 0.097 0.903 13 C -0.144 4.144 14 N -0.539 5.539 15 Si 0.710 3.290 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.197 1.197 19 C -0.012 4.012 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.152 4.152 23 C -0.195 4.195 24 C -0.179 4.179 25 C -0.063 4.063 26 N -0.198 5.198 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.026 0.974 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.109 0.891 49 H 0.049 0.951 50 H 0.129 0.871 51 H 0.151 0.849 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.054 14.840 -9.030 17.493 hybrid contribution -0.721 -1.964 -0.022 2.093 sum 1.332 12.876 -9.053 15.796 Atomic orbital electron populations 1.21861 0.93294 1.02334 1.01983 1.19443 0.95717 0.95713 0.90984 1.21650 1.00979 0.94158 1.01393 1.21938 1.01204 1.00433 0.96270 1.20962 0.94937 0.90333 0.94090 1.21800 1.02247 0.95084 0.99164 1.20386 0.92449 0.96819 0.92350 1.21064 0.95414 0.89318 0.98561 1.62405 1.00324 1.29997 1.32142 1.19973 0.98153 0.81950 0.93716 1.21447 1.00098 0.96440 1.35988 0.90259 1.24908 0.96482 0.96550 0.96411 1.69944 1.32564 1.04363 1.46981 0.86744 0.84314 0.78425 0.79481 1.20537 1.21391 1.19684 1.22094 0.91815 0.95142 0.92168 1.22572 0.93126 0.96729 1.02254 1.22452 0.97672 0.97044 0.98954 1.22385 0.94722 0.96226 1.01841 1.22924 0.99193 1.00044 0.97330 1.22009 1.01408 0.94827 0.99608 1.22623 0.96214 0.92493 0.94922 1.67400 1.10723 1.40838 1.00796 0.92385 0.92120 0.92279 0.92781 0.93248 0.91715 0.92194 0.92028 0.92525 0.85525 0.90242 0.94437 0.97385 0.95628 0.93018 0.93049 0.88888 0.94043 0.93291 0.92768 0.94405 0.89071 0.95133 0.87091 0.84937 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.41 37.16 0.31 -1.15 16 2 C -0.02 -0.20 0.87 -155.66 -0.14 -0.33 16 3 C -0.12 -1.31 7.81 37.16 0.29 -1.02 16 4 C -0.14 -1.37 8.08 37.16 0.30 -1.07 16 5 C 0.13 1.85 5.56 -82.59 -0.46 1.39 16 6 C -0.16 -2.33 7.71 -39.44 -0.30 -2.64 16 7 C -0.01 -0.18 5.22 -104.31 -0.54 -0.72 16 8 C 0.08 1.44 5.08 -4.98 -0.03 1.41 16 9 N -0.52 -10.44 4.36 -228.18 -0.99 -11.43 16 10 C 0.19 4.41 4.16 -4.98 -0.02 4.39 16 11 C -0.50 -12.62 5.25 -34.44 -0.18 -12.80 16 12 H 0.08 1.99 3.92 -52.49 -0.21 1.78 16 13 C 0.06 1.51 5.16 -17.82 -0.09 1.42 16 14 N -0.90 -25.12 13.29 55.43 0.74 -24.38 16 15 Si 0.88 20.66 28.55 -169.99 -4.85 15.80 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.10 1.81 2.72 -66.60 -0.18 1.62 16 20 C -0.11 -2.03 5.89 -25.03 -0.15 -2.18 16 21 C -0.12 -2.14 6.90 -24.69 -0.17 -2.31 16 22 C -0.11 -2.22 6.17 -25.06 -0.15 -2.37 16 23 C -0.16 -3.09 5.63 -25.61 -0.14 -3.23 16 24 C -0.16 -2.28 9.82 -39.44 -0.39 -2.67 16 25 C 0.09 1.27 11.18 -17.55 -0.20 1.07 16 26 N -0.49 -7.04 9.03 -9.47 -0.09 -7.13 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.74 7.85 -51.93 -0.41 0.33 16 33 H 0.06 0.59 6.69 -51.93 -0.35 0.24 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.13 1.71 5.79 -52.48 -0.30 1.41 16 37 H 0.08 1.34 7.82 -51.93 -0.41 0.93 16 38 H 0.04 0.62 7.95 -51.93 -0.41 0.21 16 39 H 0.01 0.22 5.82 -51.93 -0.30 -0.08 16 40 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.05 0.89 5.41 -51.93 -0.28 0.61 16 43 H 0.09 1.97 5.42 -51.93 -0.28 1.69 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 2.03 4.78 -51.93 -0.25 1.78 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.11 2.54 3.97 -51.93 -0.21 2.34 16 51 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 52 H 0.15 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -27.22 383.71 -10.53 -37.75 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.87 Total: 4.79 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.24 Total: -21.18 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.34 Total: -42.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.85 Total: 15.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.22 -10.53 -37.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232215674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.305 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds