Wall clock time and date at job start Tue Mar 31 2020 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46644 * 2 1 4 4 C 1.52999 * 109.47443 * 239.99689 * 2 1 3 5 5 C 1.50697 * 109.46924 * 119.99668 * 2 1 3 6 6 C 1.38218 * 119.62078 * 75.25716 * 5 2 1 7 7 C 1.38635 * 119.16489 * 180.26726 * 6 5 2 8 8 C 1.50700 * 120.79252 * 179.75783 * 7 6 5 9 9 N 1.46901 * 109.47119 * 269.07205 * 8 7 6 10 10 C 1.46899 * 111.00250 * 199.83374 * 9 8 7 11 11 C 1.50698 * 109.47082 * 178.27278 * 10 9 8 12 12 H 1.07996 * 120.00609 * 354.64668 * 11 10 9 13 13 C 1.37878 * 119.99677 * 174.64996 * 11 10 9 14 14 N 1.31521 * 120.00068 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00151 * 180.02562 * 13 11 10 16 16 H 1.48509 * 109.47205 * 89.99652 * 15 13 11 17 17 H 1.48496 * 109.47262 * 209.99560 * 15 13 11 18 18 H 1.48500 * 109.47156 * 330.00012 * 15 13 11 19 19 C 1.46904 * 111.00019 * 75.88002 * 9 8 7 20 20 C 1.54257 * 110.03415 * 218.16885 * 19 9 8 21 21 C 1.54969 * 104.16285 * 217.13492 * 20 19 9 22 22 C 1.54900 * 102.77370 * 37.88879 * 21 20 19 23 23 C 1.53878 * 110.02805 * 100.94878 * 19 9 8 24 24 C 1.38673 * 118.41784 * 359.48957 * 7 6 5 25 25 C 1.38186 * 119.16023 * 0.24327 * 24 7 6 26 26 N 1.31860 * 119.61925 * 255.00202 * 5 2 1 27 27 H 1.08992 * 109.47598 * 299.99926 * 1 2 3 28 28 H 1.08997 * 109.47133 * 60.00579 * 1 2 3 29 29 H 1.09003 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46916 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46883 * 299.99574 * 3 2 1 32 32 H 1.08995 * 109.47496 * 59.99480 * 3 2 1 33 33 H 1.09001 * 109.46817 * 300.00022 * 4 2 1 34 34 H 1.09004 * 109.46883 * 60.00023 * 4 2 1 35 35 H 1.08997 * 109.46989 * 179.97438 * 4 2 1 36 36 H 1.08003 * 120.42257 * 0.02562 * 6 5 2 37 37 H 1.08997 * 109.46816 * 149.07652 * 8 7 6 38 38 H 1.08996 * 109.46886 * 29.07142 * 8 7 6 39 39 H 1.09000 * 109.47113 * 298.27957 * 10 9 8 40 40 H 1.09000 * 109.46598 * 58.27595 * 10 9 8 41 41 H 0.97002 * 120.00046 * 179.97438 * 14 13 11 42 42 H 1.09005 * 110.01419 * 339.56351 * 19 9 8 43 43 H 1.09002 * 110.49097 * 335.78334 * 20 19 9 44 44 H 1.09004 * 110.48843 * 98.42966 * 20 19 9 45 45 H 1.08993 * 110.72245 * 279.57866 * 21 20 19 46 46 H 1.08998 * 110.92313 * 156.29405 * 21 20 19 47 47 H 1.08991 * 110.48691 * 203.40350 * 22 21 20 48 48 H 1.08998 * 110.59330 * 80.81480 * 22 21 20 49 49 H 1.09001 * 110.03312 * 238.56564 * 23 19 9 50 50 H 1.08996 * 110.03363 * 0.02562 * 23 19 9 51 51 H 1.07999 * 120.41940 * 180.22555 * 24 7 6 52 52 H 1.08004 * 119.61617 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.9717 -2.0896 1.2956 7 6 2.4312 -2.7331 2.4344 8 6 2.3775 -4.2349 2.5467 9 7 1.1053 -4.6346 3.1629 10 6 1.1918 -5.9929 3.7156 11 6 -0.1150 -6.3511 4.3750 12 1 -0.8979 -5.6120 4.4593 13 6 -0.3113 -7.6226 4.8708 14 7 0.6419 -8.5230 4.7678 15 14 -1.9314 -8.0670 5.6876 16 1 -2.8744 -8.5883 4.6656 17 1 -1.6960 -9.1076 6.7205 18 1 -2.5119 -6.8583 6.3258 19 6 -0.0015 -4.5264 2.2031 20 6 -1.2680 -4.0058 2.9133 21 6 -2.4270 -4.7842 2.2408 22 6 -1.8175 -6.1928 2.0316 23 6 -0.3505 -5.9162 1.6422 24 6 2.9468 -1.9621 3.4654 25 6 2.9803 -0.5877 3.3265 26 7 2.5292 -0.0091 2.2306 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2493 36 1 1.5678 -2.6589 0.4714 37 1 3.2054 -4.5828 3.1644 38 1 2.4546 -4.6765 1.5532 39 1 1.3992 -6.6996 2.9121 40 1 1.9940 -6.0349 4.4524 41 1 0.5040 -9.4174 5.1170 42 1 0.2739 -3.8542 1.3903 43 1 -1.2267 -4.2292 3.9794 44 1 -1.3829 -2.9340 2.7514 45 1 -2.6918 -4.3321 1.2851 46 1 -3.2957 -4.8329 2.8973 47 1 -2.3336 -6.7161 1.2268 48 1 -1.8647 -6.7718 2.9538 49 1 -0.2456 -5.9182 0.5573 50 1 0.3010 -6.6709 2.0826 51 1 3.3171 -2.4300 4.3656 52 1 3.3799 0.0199 4.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232215674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:43 Heat of formation + Delta-G solvation = 25.664862 kcal Electronic energy + Delta-G solvation = -28199.608952 eV Core-core repulsion = 24777.353901 eV Total energy + Delta-G solvation = -3422.255052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55721 -40.25369 -37.59471 -36.08783 -34.83257 -33.31215 -31.29764 -29.80415 -29.06507 -28.75743 -28.11003 -27.95944 -25.97196 -24.45588 -23.92286 -22.82546 -21.38621 -20.21847 -19.59989 -18.51456 -17.42167 -17.28234 -16.96613 -16.69460 -16.37726 -16.11050 -15.53853 -15.30945 -15.18012 -14.74639 -14.61657 -14.51651 -14.15548 -13.95397 -13.80411 -13.30632 -13.13844 -12.94722 -12.92200 -12.81975 -12.73548 -12.60535 -12.50843 -12.36740 -12.07945 -11.94321 -11.83754 -11.72801 -11.70060 -11.59570 -11.55556 -11.38529 -10.91359 -10.65821 -10.46429 -10.38177 -10.26655 -9.77649 -8.87022 -8.10672 -6.10771 0.28072 0.37801 1.39543 1.42642 1.50495 2.43950 2.85696 3.24715 3.31914 3.40080 3.67651 3.80103 3.97000 3.99818 4.10958 4.13783 4.19998 4.23698 4.31187 4.34634 4.47934 4.57653 4.66823 4.76928 4.78119 4.80736 4.81889 4.83119 4.89639 4.94206 4.97522 5.00022 5.03563 5.07588 5.12379 5.14034 5.20967 5.22412 5.25758 5.28799 5.30075 5.36933 5.44623 5.52083 5.52905 5.58100 5.74243 5.87621 5.88708 5.93903 6.18972 6.41815 6.72652 7.03438 7.13246 7.53323 9.01316 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.003867 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.385407 B = 7239.906209 C = 7891.347661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.020 4.020 3 C -0.120 4.120 4 C -0.138 4.138 5 C 0.132 3.868 6 C -0.166 4.166 7 C -0.025 4.025 8 C 0.088 3.912 9 N -0.529 5.529 10 C 0.202 3.798 11 C -0.492 4.492 12 H 0.083 0.917 13 C 0.012 3.988 14 N -0.936 5.936 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.292 1.292 18 H -0.266 1.266 19 C 0.098 3.902 20 C -0.107 4.107 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.155 4.155 24 C -0.168 4.168 25 C 0.094 3.906 26 N -0.499 5.499 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.041 0.959 39 H -0.011 1.011 40 H -0.005 1.005 41 H 0.258 0.742 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.050 0.950 50 H 0.074 0.926 51 H 0.136 0.864 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 15.962 -11.055 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 C -0.177 4.177 4 C -0.196 4.196 5 C -0.006 4.006 6 C -0.186 4.186 7 C -0.033 4.033 8 C -0.040 4.040 9 N -0.253 5.253 10 C 0.077 3.923 11 C -0.530 4.530 12 H 0.101 0.899 13 C -0.185 4.185 14 N -0.578 5.578 15 Si 0.761 3.239 16 H -0.198 1.198 17 H -0.218 1.218 18 H -0.190 1.190 19 C -0.010 4.010 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.193 4.193 24 C -0.189 4.189 25 C -0.062 4.062 26 N -0.209 5.209 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.007 0.993 40 H 0.013 0.987 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.092 0.908 51 H 0.154 0.846 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.692 17.009 -10.674 20.092 hybrid contribution -0.242 -2.557 0.448 2.607 sum 0.451 14.452 -10.225 17.709 Atomic orbital electron populations 1.21846 0.92650 1.02179 1.02507 1.19569 0.96162 0.95957 0.90375 1.21606 1.00469 0.93788 1.01842 1.21928 1.00947 1.00454 0.96258 1.21424 0.94107 0.90291 0.94783 1.21876 1.02254 0.95524 0.98916 1.20262 0.93947 0.95568 0.93527 1.21025 0.93808 0.90837 0.98291 1.62297 1.02180 1.27295 1.33497 1.19633 0.96493 0.83716 0.92488 1.21693 1.00434 0.96236 1.34672 0.89911 1.25553 0.99013 0.96726 0.97245 1.70067 1.34436 1.04627 1.48652 0.85905 0.81301 0.78084 0.78579 1.19793 1.21833 1.19043 1.22162 0.91465 0.95022 0.92350 1.22498 0.93655 0.97882 1.00430 1.22422 0.97104 0.95269 1.00355 1.22341 0.94924 0.97450 1.00866 1.22827 0.98756 0.99385 0.98320 1.22137 1.01683 0.95409 0.99626 1.23039 0.95459 0.92354 0.95355 1.67502 1.11022 1.41127 1.01200 0.93541 0.89941 0.92734 0.93509 0.91144 0.92909 0.92296 0.90026 0.92964 0.84714 0.90905 0.94040 0.99347 0.98658 0.93326 0.91097 0.91833 0.92461 0.90472 0.92106 0.92745 0.92254 0.93164 0.90762 0.84607 0.80672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.41 71.98 0.61 -1.87 16 2 C -0.02 -0.39 0.87 -52.93 -0.05 -0.44 16 3 C -0.12 -2.23 7.81 71.98 0.56 -1.66 16 4 C -0.14 -2.30 8.08 71.98 0.58 -1.72 16 5 C 0.13 3.38 5.56 42.55 0.24 3.62 16 6 C -0.17 -4.49 7.71 22.36 0.17 -4.32 16 7 C -0.02 -0.74 5.22 -19.67 -0.10 -0.84 16 8 C 0.09 3.03 5.08 85.56 0.44 3.46 16 9 N -0.53 -21.27 4.36 -875.83 -3.82 -25.08 16 10 C 0.20 9.94 4.16 85.56 0.36 10.30 16 11 C -0.49 -25.35 5.25 25.60 0.13 -25.22 16 12 H 0.08 4.19 3.92 -2.91 -0.01 4.18 16 13 C 0.01 0.64 5.16 84.65 0.44 1.07 16 14 N -0.94 -54.12 13.29 21.45 0.28 -53.84 16 15 Si 0.93 42.94 28.55 68.60 1.96 44.90 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 C 0.10 3.57 2.72 45.64 0.12 3.70 16 20 C -0.11 -3.79 5.89 31.69 0.19 -3.60 16 21 C -0.11 -3.65 6.90 31.92 0.22 -3.42 16 22 C -0.12 -4.43 6.17 31.67 0.20 -4.24 16 23 C -0.15 -5.99 5.63 31.32 0.18 -5.81 16 24 C -0.17 -4.74 9.82 22.36 0.22 -4.52 16 25 C 0.09 2.41 11.18 84.67 0.95 3.36 16 26 N -0.50 -13.58 9.03 -183.89 -1.66 -15.24 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.10 7.85 -2.39 -0.02 1.08 16 33 H 0.06 0.99 6.69 -2.39 -0.02 0.98 16 34 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.14 3.37 5.79 -2.91 -0.02 3.35 16 37 H 0.07 2.55 7.82 -2.39 -0.02 2.53 16 38 H 0.04 1.38 7.95 -2.39 -0.02 1.36 16 39 H -0.01 -0.57 5.82 -2.39 -0.01 -0.58 16 40 H 0.00 -0.25 8.03 -2.39 -0.02 -0.27 16 41 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.07 2.31 5.41 -2.38 -0.01 2.29 16 43 H 0.06 2.65 5.42 -2.39 -0.01 2.64 16 44 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.06 2.61 4.78 -2.39 -0.01 2.60 16 49 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.07 3.49 3.97 -2.39 -0.01 3.48 16 51 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 52 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -59.51 383.71 3.10 -56.41 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.89 Total: 25.01 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 5.44 Total: -32.16 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -5.19 Total: -94.17 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.96 Total: 44.90 kcal Total: -59.51 3.10 -56.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232215674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.076 kcal (2) G-P(sol) polarization free energy of solvation -59.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds