Wall clock time and date at job start Tue Mar 31 2020 11:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46807 * 2 1 4 4 C 1.53002 * 109.46807 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47073 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47061 * 179.97438 * 5 4 3 7 7 C 1.46958 * 111.00088 * 293.80157 * 6 5 4 8 8 C 1.53053 * 109.36119 * 176.81258 * 7 6 5 9 9 N 1.46951 * 109.36417 * 58.40264 * 8 7 6 10 10 C 1.46899 * 110.99878 * 176.81047 * 9 8 7 11 11 C 1.50702 * 109.47186 * 288.50214 * 10 9 8 12 12 C 1.37646 * 120.12602 * 104.23532 * 11 10 9 13 13 C 1.38614 * 120.24338 * 179.70085 * 12 11 10 14 14 C 1.38662 * 120.50115 * 0.60028 * 13 12 11 15 15 C 1.37598 * 120.25036 * 359.67866 * 14 13 12 16 16 C 1.40696 * 120.12861 * 284.50895 * 11 10 9 17 17 C 1.41398 * 120.24172 * 0.02562 * 16 11 10 18 18 H 1.07995 * 120.00154 * 330.61412 * 17 16 11 19 19 C 1.39945 * 120.00019 * 150.61448 * 17 16 11 20 20 N 1.30834 * 119.99779 * 348.48650 * 19 17 16 21 21 Si 1.86801 * 120.00160 * 168.48297 * 19 17 16 22 22 H 1.48495 * 109.46921 * 90.00405 * 21 19 17 23 23 H 1.48498 * 109.47086 * 210.00208 * 21 19 17 24 24 H 1.48496 * 109.47181 * 330.00358 * 21 19 17 25 25 C 1.46958 * 110.88108 * 300.67557 * 9 8 7 26 26 C 1.46960 * 110.99723 * 170.00388 * 6 5 4 27 27 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47194 * 300.00335 * 1 2 3 29 29 H 1.09005 * 109.47120 * 60.00369 * 1 2 3 30 30 H 1.09000 * 109.47194 * 239.99664 * 2 1 3 31 31 H 1.08996 * 109.46893 * 119.99583 * 2 1 3 32 32 H 1.08998 * 109.47568 * 299.99445 * 3 2 1 33 33 H 1.09000 * 109.47517 * 59.99862 * 3 2 1 34 34 H 1.09005 * 109.47120 * 299.99631 * 4 3 2 35 35 H 1.08997 * 109.47513 * 60.00065 * 4 3 2 36 36 H 1.08992 * 109.47229 * 300.00216 * 5 4 3 37 37 H 1.09000 * 109.47052 * 60.00473 * 5 4 3 38 38 H 1.09002 * 109.48786 * 296.78160 * 7 6 5 39 39 H 1.08998 * 109.48644 * 56.84145 * 7 6 5 40 40 H 1.09000 * 109.48835 * 298.42965 * 8 7 6 41 41 H 1.08997 * 109.48414 * 178.36773 * 8 7 6 42 42 H 1.09003 * 109.47293 * 48.50143 * 10 9 8 43 43 H 1.09003 * 109.47817 * 168.49973 * 10 9 8 44 44 H 1.07990 * 119.87529 * 359.97438 * 12 11 10 45 45 H 1.07995 * 119.74691 * 180.29864 * 13 12 11 46 46 H 1.07997 * 119.87161 * 179.69987 * 14 13 12 47 47 H 1.07988 * 120.12740 * 180.02562 * 15 14 13 48 48 H 0.96995 * 119.99279 * 179.97438 * 20 19 17 49 49 H 1.09002 * 109.48786 * 299.35364 * 25 9 8 50 50 H 1.08999 * 109.50809 * 179.30175 * 25 9 8 51 51 H 1.09005 * 109.48830 * 303.15525 * 26 6 5 52 52 H 1.08995 * 109.49028 * 63.22019 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 5.5490 2.8850 0.0012 7 6 6.0746 2.3322 1.2574 8 6 7.6025 2.2761 1.1870 9 7 8.1292 3.6270 0.9482 10 6 9.5982 3.6270 0.9494 11 6 10.0995 3.4179 2.3552 12 6 10.6055 2.1951 2.7335 13 6 11.0729 2.0019 4.0241 14 6 11.0252 3.0317 4.9514 15 6 10.5183 4.2608 4.5969 16 6 10.0467 4.4702 3.2876 17 6 9.5231 5.7289 2.9121 18 1 9.6015 6.0626 1.8880 19 6 8.9033 6.5422 3.8675 20 7 8.6053 6.0570 5.0454 21 14 8.5014 8.3206 3.4610 22 1 7.1397 8.3986 2.8739 23 1 8.5531 9.1357 4.7013 24 1 9.4919 8.8413 2.4849 25 6 7.6036 4.1798 -0.3079 26 6 6.0758 4.2360 -0.2375 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.9329 0.9288 0.8909 35 1 3.9337 0.9285 -0.8891 36 1 3.7170 3.3983 -0.8903 37 1 3.7163 3.3993 0.8896 38 1 5.7720 2.9682 2.0893 39 1 5.6801 1.3270 1.4055 40 1 7.9050 1.6184 0.3721 41 1 7.9960 1.8935 2.1287 42 1 9.9621 2.8224 0.3105 43 1 9.9620 4.5829 0.5724 44 1 10.6425 1.3845 2.0209 45 1 11.4727 1.0405 4.3109 46 1 11.3877 2.8685 5.9555 47 1 10.4825 5.0615 5.3206 48 1 8.1761 6.6208 5.7077 49 1 7.9063 3.5438 -1.1398 50 1 7.9980 5.1850 -0.4564 51 1 5.6822 4.6186 -1.1792 52 1 5.7732 4.8936 0.5774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235522710.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:58 Heat of formation + Delta-G solvation = 7.913045 kcal Electronic energy + Delta-G solvation = -26985.713952 eV Core-core repulsion = 23562.689124 eV Total energy + Delta-G solvation = -3423.024828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.10105 -37.63226 -36.30242 -34.68597 -33.49434 -31.59073 -30.48315 -30.08474 -29.32733 -27.21762 -25.41264 -24.63562 -23.44175 -22.80942 -21.38826 -20.86933 -20.84573 -19.49499 -19.23120 -17.05881 -15.96560 -15.96048 -15.36341 -14.81773 -14.61321 -14.49428 -14.38180 -14.19129 -14.04678 -13.69866 -13.41497 -13.25480 -13.10148 -12.82334 -12.50900 -12.10627 -11.96624 -11.82271 -11.50073 -11.44608 -11.25738 -11.18086 -11.07679 -11.00645 -10.94761 -10.84210 -10.77255 -10.66073 -10.57262 -10.36156 -10.25172 -10.10763 -9.44577 -9.19526 -9.09976 -8.13700 -7.52255 -7.28307 -7.21254 -6.59826 -4.20905 2.85115 3.01620 3.12604 3.16313 3.29927 4.02779 4.03254 4.60948 4.68722 4.75254 4.80899 4.92655 5.05356 5.21751 5.26337 5.42530 5.47239 5.50368 5.58529 5.61423 5.68147 5.74932 5.79119 5.80792 5.82146 5.85150 5.89570 5.93642 6.02583 6.08301 6.11781 6.21126 6.24622 6.27620 6.30158 6.32488 6.45213 6.48961 6.54405 6.58538 6.86167 7.19887 7.25010 7.27015 7.33154 7.46202 7.70887 7.76484 7.85254 8.02156 8.14641 8.17537 8.41801 8.73904 9.02924 9.08716 10.35406 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.003382 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.419853 B = 8277.700531 C = 9202.315423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.116 4.116 5 C 0.055 3.945 6 N -0.541 5.541 7 C 0.058 3.942 8 C 0.066 3.934 9 N -0.515 5.515 10 C 0.130 3.870 11 C -0.189 4.189 12 C -0.089 4.089 13 C -0.244 4.244 14 C -0.108 4.108 15 C -0.160 4.160 16 C 0.131 3.869 17 C -0.433 4.433 18 H 0.074 0.926 19 C 0.076 3.924 20 N -0.803 5.803 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.263 1.263 25 C 0.060 3.940 26 C 0.059 3.941 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.083 0.917 42 H 0.015 0.985 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.276 0.724 49 H 0.029 0.971 50 H 0.075 0.925 51 H 0.070 0.930 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 -5.809 -9.058 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.154 4.154 5 C -0.073 4.073 6 N -0.265 5.265 7 C -0.070 4.070 8 C -0.063 4.063 9 N -0.239 5.239 10 C 0.004 3.996 11 C -0.191 4.191 12 C -0.108 4.108 13 C -0.263 4.263 14 C -0.126 4.126 15 C -0.180 4.180 16 C 0.128 3.872 17 C -0.463 4.463 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.430 5.430 21 Si 0.728 3.272 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.069 4.069 26 C -0.069 4.069 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.101 0.899 42 H 0.033 0.967 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.134 0.866 48 H 0.087 0.913 49 H 0.047 0.953 50 H 0.093 0.907 51 H 0.088 0.912 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.629 -5.712 -8.853 14.965 hybrid contribution -0.363 0.784 0.047 0.865 sum -10.992 -4.928 -8.806 14.921 Atomic orbital electron populations 1.21783 0.96100 1.01421 1.01718 1.21521 0.95605 0.97028 1.02049 1.21583 0.95519 0.96677 1.01903 1.21605 0.94474 0.96626 1.02663 1.22083 0.87822 0.96890 1.00465 1.62217 1.06792 1.22404 1.35136 1.22198 0.95369 0.99351 0.90115 1.22037 0.93233 0.89995 1.01009 1.62077 1.08433 1.21136 1.32229 1.20560 0.85469 0.99044 0.94520 1.19464 1.09689 0.94022 0.95956 1.20369 0.99763 0.95441 0.95241 1.20301 1.12830 0.98281 0.94895 1.20681 1.00455 0.94552 0.96948 1.21346 1.02028 0.96375 0.98242 1.17363 0.87521 0.91679 0.90606 1.19374 1.31398 0.99897 0.95677 0.90769 1.25805 0.94093 0.99701 0.94375 1.69813 1.31302 1.36625 1.05218 0.86404 0.79491 0.82546 0.78737 1.19743 1.20480 1.18738 1.22083 0.93753 0.99837 0.91182 1.22125 0.95259 0.89148 1.00347 0.92931 0.92805 0.92868 0.92066 0.92040 0.92125 0.92162 0.91861 0.91343 0.91281 0.95024 0.93845 0.90917 0.95511 0.89853 0.96730 0.91346 0.89974 0.89873 0.89772 0.86578 0.91349 0.95257 0.90652 0.91176 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 4 C -0.12 -1.23 5.15 -26.73 -0.14 -1.36 16 5 C 0.06 0.68 4.96 -3.82 -0.02 0.66 16 6 N -0.54 -7.91 4.71 -234.46 -1.10 -9.02 16 7 C 0.06 0.93 5.41 -3.76 -0.02 0.91 16 8 C 0.07 1.19 5.44 -3.77 -0.02 1.17 16 9 N -0.51 -10.02 4.59 -235.91 -1.08 -11.10 16 10 C 0.13 2.66 4.45 -4.98 -0.02 2.64 16 11 C -0.19 -4.43 4.73 -103.91 -0.49 -4.92 16 12 C -0.09 -1.99 9.03 -39.66 -0.36 -2.35 16 13 C -0.24 -5.51 10.05 -39.29 -0.39 -5.90 16 14 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16 15 C -0.16 -4.18 8.65 -38.87 -0.34 -4.51 16 16 C 0.13 3.40 5.54 -106.82 -0.59 2.81 16 17 C -0.43 -11.15 8.36 -37.74 -0.32 -11.47 16 18 H 0.07 1.86 6.65 -52.49 -0.35 1.51 16 19 C 0.08 1.91 5.24 -17.34 -0.09 1.82 16 20 N -0.80 -20.96 10.93 55.55 0.61 -20.36 16 21 Si 0.90 19.01 29.58 -169.99 -5.03 13.98 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 25 C 0.06 0.99 5.59 -3.77 -0.02 0.97 16 26 C 0.06 0.90 5.61 -3.77 -0.02 0.88 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.71 6.49 -51.93 -0.34 0.37 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 37 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.04 6.34 -51.93 -0.33 0.72 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.67 6.90 -51.93 -0.36 1.31 16 42 H 0.01 0.28 7.87 -51.93 -0.41 -0.13 16 43 H 0.07 1.40 6.78 -51.93 -0.35 1.05 16 44 H 0.08 1.64 8.00 -52.49 -0.42 1.22 16 45 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.12 3.14 6.30 -52.49 -0.33 2.81 16 48 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 1.22 8.03 -51.93 -0.42 0.81 16 51 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 52 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -26.83 400.08 -13.36 -40.19 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -9.61 Total: 5.03 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -3.17 Total: -24.76 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: -1.58 Total: -40.47 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -26.83 -13.36 -40.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522710.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.106 kcal (2) G-P(sol) polarization free energy of solvation -26.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds