Wall clock time and date at job start Tue Mar 31 2020 11:04:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52993 * 109.46807 * 2 1
4 4 C 1.53002 * 109.46807 * 179.97438 * 3 2 1
5 5 C 1.53003 * 109.47073 * 179.97438 * 4 3 2
6 6 N 1.46906 * 109.47061 * 179.97438 * 5 4 3
7 7 C 1.46958 * 111.00088 * 293.80157 * 6 5 4
8 8 C 1.53053 * 109.36119 * 176.81258 * 7 6 5
9 9 N 1.46951 * 109.36417 * 58.40264 * 8 7 6
10 10 C 1.46899 * 110.99878 * 176.81047 * 9 8 7
11 11 C 1.50702 * 109.47186 * 288.50214 * 10 9 8
12 12 C 1.37646 * 120.12602 * 104.23532 * 11 10 9
13 13 C 1.38614 * 120.24338 * 179.70085 * 12 11 10
14 14 C 1.38662 * 120.50115 * 0.60028 * 13 12 11
15 15 C 1.37598 * 120.25036 * 359.67866 * 14 13 12
16 16 C 1.40696 * 120.12861 * 284.50895 * 11 10 9
17 17 C 1.41398 * 120.24172 * 0.02562 * 16 11 10
18 18 H 1.07995 * 120.00154 * 330.61412 * 17 16 11
19 19 C 1.39945 * 120.00019 * 150.61448 * 17 16 11
20 20 N 1.30834 * 119.99779 * 348.48650 * 19 17 16
21 21 Si 1.86801 * 120.00160 * 168.48297 * 19 17 16
22 22 H 1.48495 * 109.46921 * 90.00405 * 21 19 17
23 23 H 1.48498 * 109.47086 * 210.00208 * 21 19 17
24 24 H 1.48496 * 109.47181 * 330.00358 * 21 19 17
25 25 C 1.46958 * 110.88108 * 300.67557 * 9 8 7
26 26 C 1.46960 * 110.99723 * 170.00388 * 6 5 4
27 27 H 1.08998 * 109.47307 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47194 * 300.00335 * 1 2 3
29 29 H 1.09005 * 109.47120 * 60.00369 * 1 2 3
30 30 H 1.09000 * 109.47194 * 239.99664 * 2 1 3
31 31 H 1.08996 * 109.46893 * 119.99583 * 2 1 3
32 32 H 1.08998 * 109.47568 * 299.99445 * 3 2 1
33 33 H 1.09000 * 109.47517 * 59.99862 * 3 2 1
34 34 H 1.09005 * 109.47120 * 299.99631 * 4 3 2
35 35 H 1.08997 * 109.47513 * 60.00065 * 4 3 2
36 36 H 1.08992 * 109.47229 * 300.00216 * 5 4 3
37 37 H 1.09000 * 109.47052 * 60.00473 * 5 4 3
38 38 H 1.09002 * 109.48786 * 296.78160 * 7 6 5
39 39 H 1.08998 * 109.48644 * 56.84145 * 7 6 5
40 40 H 1.09000 * 109.48835 * 298.42965 * 8 7 6
41 41 H 1.08997 * 109.48414 * 178.36773 * 8 7 6
42 42 H 1.09003 * 109.47293 * 48.50143 * 10 9 8
43 43 H 1.09003 * 109.47817 * 168.49973 * 10 9 8
44 44 H 1.07990 * 119.87529 * 359.97438 * 12 11 10
45 45 H 1.07995 * 119.74691 * 180.29864 * 13 12 11
46 46 H 1.07997 * 119.87161 * 179.69987 * 14 13 12
47 47 H 1.07988 * 120.12740 * 180.02562 * 15 14 13
48 48 H 0.96995 * 119.99279 * 179.97438 * 20 19 17
49 49 H 1.09002 * 109.48786 * 299.35364 * 25 9 8
50 50 H 1.08999 * 109.50809 * 179.30175 * 25 9 8
51 51 H 1.09005 * 109.48830 * 303.15525 * 26 6 5
52 52 H 1.08995 * 109.49028 * 63.22019 * 26 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4425 0.0006
5 6 4.0799 2.8850 0.0000
6 7 5.5490 2.8850 0.0012
7 6 6.0746 2.3322 1.2574
8 6 7.6025 2.2761 1.1870
9 7 8.1292 3.6270 0.9482
10 6 9.5982 3.6270 0.9494
11 6 10.0995 3.4179 2.3552
12 6 10.6055 2.1951 2.7335
13 6 11.0729 2.0019 4.0241
14 6 11.0252 3.0317 4.9514
15 6 10.5183 4.2608 4.5969
16 6 10.0467 4.4702 3.2876
17 6 9.5231 5.7289 2.9121
18 1 9.6015 6.0626 1.8880
19 6 8.9033 6.5422 3.8675
20 7 8.6053 6.0570 5.0454
21 14 8.5014 8.3206 3.4610
22 1 7.1397 8.3986 2.8739
23 1 8.5531 9.1357 4.7013
24 1 9.4919 8.8413 2.4849
25 6 7.6036 4.1798 -0.3079
26 6 6.0758 4.2360 -0.2375
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 1.6767 1.9563 -0.8900
33 1 1.6766 1.9563 0.8899
34 1 3.9329 0.9288 0.8909
35 1 3.9337 0.9285 -0.8891
36 1 3.7170 3.3983 -0.8903
37 1 3.7163 3.3993 0.8896
38 1 5.7720 2.9682 2.0893
39 1 5.6801 1.3270 1.4055
40 1 7.9050 1.6184 0.3721
41 1 7.9960 1.8935 2.1287
42 1 9.9621 2.8224 0.3105
43 1 9.9620 4.5829 0.5724
44 1 10.6425 1.3845 2.0209
45 1 11.4727 1.0405 4.3109
46 1 11.3877 2.8685 5.9555
47 1 10.4825 5.0615 5.3206
48 1 8.1761 6.6208 5.7077
49 1 7.9063 3.5438 -1.1398
50 1 7.9980 5.1850 -0.4564
51 1 5.6822 4.6186 -1.1792
52 1 5.7732 4.8936 0.5774
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001235522710.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:58
Heat of formation + Delta-G solvation = 7.913045 kcal
Electronic energy + Delta-G solvation = -26985.713952 eV
Core-core repulsion = 23562.689124 eV
Total energy + Delta-G solvation = -3423.024828 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-39.10105 -37.63226 -36.30242 -34.68597 -33.49434 -31.59073 -30.48315 -30.08474
-29.32733 -27.21762 -25.41264 -24.63562 -23.44175 -22.80942 -21.38826 -20.86933
-20.84573 -19.49499 -19.23120 -17.05881 -15.96560 -15.96048 -15.36341 -14.81773
-14.61321 -14.49428 -14.38180 -14.19129 -14.04678 -13.69866 -13.41497 -13.25480
-13.10148 -12.82334 -12.50900 -12.10627 -11.96624 -11.82271 -11.50073 -11.44608
-11.25738 -11.18086 -11.07679 -11.00645 -10.94761 -10.84210 -10.77255 -10.66073
-10.57262 -10.36156 -10.25172 -10.10763 -9.44577 -9.19526 -9.09976 -8.13700
-7.52255 -7.28307 -7.21254 -6.59826 -4.20905 2.85115 3.01620 3.12604
3.16313 3.29927 4.02779 4.03254 4.60948 4.68722 4.75254 4.80899
4.92655 5.05356 5.21751 5.26337 5.42530 5.47239 5.50368 5.58529
5.61423 5.68147 5.74932 5.79119 5.80792 5.82146 5.85150 5.89570
5.93642 6.02583 6.08301 6.11781 6.21126 6.24622 6.27620 6.30158
6.32488 6.45213 6.48961 6.54405 6.58538 6.86167 7.19887 7.25010
7.27015 7.33154 7.46202 7.70887 7.76484 7.85254 8.02156 8.14641
8.17537 8.41801 8.73904 9.02924 9.08716 10.35406
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.012330 B = 0.003382 C = 0.003042
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2270.419853 B = 8277.700531 C = 9202.315423
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.124 4.124
3 C -0.119 4.119
4 C -0.116 4.116
5 C 0.055 3.945
6 N -0.541 5.541
7 C 0.058 3.942
8 C 0.066 3.934
9 N -0.515 5.515
10 C 0.130 3.870
11 C -0.189 4.189
12 C -0.089 4.089
13 C -0.244 4.244
14 C -0.108 4.108
15 C -0.160 4.160
16 C 0.131 3.869
17 C -0.433 4.433
18 H 0.074 0.926
19 C 0.076 3.924
20 N -0.803 5.803
21 Si 0.903 3.097
22 H -0.272 1.272
23 H -0.280 1.280
24 H -0.263 1.263
25 C 0.060 3.940
26 C 0.059 3.941
27 H 0.052 0.948
28 H 0.053 0.947
29 H 0.052 0.948
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.060 0.940
33 H 0.060 0.940
34 H 0.063 0.937
35 H 0.068 0.932
36 H 0.069 0.931
37 H 0.031 0.969
38 H 0.043 0.957
39 H 0.073 0.927
40 H 0.027 0.973
41 H 0.083 0.917
42 H 0.015 0.985
43 H 0.068 0.932
44 H 0.082 0.918
45 H 0.083 0.917
46 H 0.084 0.916
47 H 0.116 0.884
48 H 0.276 0.724
49 H 0.029 0.971
50 H 0.075 0.925
51 H 0.070 0.930
52 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.512 -5.809 -9.058 15.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.162 4.162
3 C -0.157 4.157
4 C -0.154 4.154
5 C -0.073 4.073
6 N -0.265 5.265
7 C -0.070 4.070
8 C -0.063 4.063
9 N -0.239 5.239
10 C 0.004 3.996
11 C -0.191 4.191
12 C -0.108 4.108
13 C -0.263 4.263
14 C -0.126 4.126
15 C -0.180 4.180
16 C 0.128 3.872
17 C -0.463 4.463
18 H 0.092 0.908
19 C -0.140 4.140
20 N -0.430 5.430
21 Si 0.728 3.272
22 H -0.197 1.197
23 H -0.205 1.205
24 H -0.187 1.187
25 C -0.069 4.069
26 C -0.069 4.069
27 H 0.071 0.929
28 H 0.072 0.928
29 H 0.071 0.929
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.081 0.919
35 H 0.087 0.913
36 H 0.087 0.913
37 H 0.050 0.950
38 H 0.062 0.938
39 H 0.091 0.909
40 H 0.045 0.955
41 H 0.101 0.899
42 H 0.033 0.967
43 H 0.087 0.913
44 H 0.100 0.900
45 H 0.101 0.899
46 H 0.102 0.898
47 H 0.134 0.866
48 H 0.087 0.913
49 H 0.047 0.953
50 H 0.093 0.907
51 H 0.088 0.912
52 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -10.629 -5.712 -8.853 14.965
hybrid contribution -0.363 0.784 0.047 0.865
sum -10.992 -4.928 -8.806 14.921
Atomic orbital electron populations
1.21783 0.96100 1.01421 1.01718 1.21521 0.95605 0.97028 1.02049
1.21583 0.95519 0.96677 1.01903 1.21605 0.94474 0.96626 1.02663
1.22083 0.87822 0.96890 1.00465 1.62217 1.06792 1.22404 1.35136
1.22198 0.95369 0.99351 0.90115 1.22037 0.93233 0.89995 1.01009
1.62077 1.08433 1.21136 1.32229 1.20560 0.85469 0.99044 0.94520
1.19464 1.09689 0.94022 0.95956 1.20369 0.99763 0.95441 0.95241
1.20301 1.12830 0.98281 0.94895 1.20681 1.00455 0.94552 0.96948
1.21346 1.02028 0.96375 0.98242 1.17363 0.87521 0.91679 0.90606
1.19374 1.31398 0.99897 0.95677 0.90769 1.25805 0.94093 0.99701
0.94375 1.69813 1.31302 1.36625 1.05218 0.86404 0.79491 0.82546
0.78737 1.19743 1.20480 1.18738 1.22083 0.93753 0.99837 0.91182
1.22125 0.95259 0.89148 1.00347 0.92931 0.92805 0.92868 0.92066
0.92040 0.92125 0.92162 0.91861 0.91343 0.91281 0.95024 0.93845
0.90917 0.95511 0.89853 0.96730 0.91346 0.89974 0.89873 0.89772
0.86578 0.91349 0.95257 0.90652 0.91176 0.93838
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16
2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16
3 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16
4 C -0.12 -1.23 5.15 -26.73 -0.14 -1.36 16
5 C 0.06 0.68 4.96 -3.82 -0.02 0.66 16
6 N -0.54 -7.91 4.71 -234.46 -1.10 -9.02 16
7 C 0.06 0.93 5.41 -3.76 -0.02 0.91 16
8 C 0.07 1.19 5.44 -3.77 -0.02 1.17 16
9 N -0.51 -10.02 4.59 -235.91 -1.08 -11.10 16
10 C 0.13 2.66 4.45 -4.98 -0.02 2.64 16
11 C -0.19 -4.43 4.73 -103.91 -0.49 -4.92 16
12 C -0.09 -1.99 9.03 -39.66 -0.36 -2.35 16
13 C -0.24 -5.51 10.05 -39.29 -0.39 -5.90 16
14 C -0.11 -2.56 10.02 -39.66 -0.40 -2.96 16
15 C -0.16 -4.18 8.65 -38.87 -0.34 -4.51 16
16 C 0.13 3.40 5.54 -106.82 -0.59 2.81 16
17 C -0.43 -11.15 8.36 -37.74 -0.32 -11.47 16
18 H 0.07 1.86 6.65 -52.49 -0.35 1.51 16
19 C 0.08 1.91 5.24 -17.34 -0.09 1.82 16
20 N -0.80 -20.96 10.93 55.55 0.61 -20.36 16
21 Si 0.90 19.01 29.58 -169.99 -5.03 13.98 16
22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16
24 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16
25 C 0.06 0.99 5.59 -3.77 -0.02 0.97 16
26 C 0.06 0.90 5.61 -3.77 -0.02 0.88 16
27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.06 0.71 6.49 -51.93 -0.34 0.37 16
35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16
37 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16
38 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16
39 H 0.07 1.04 6.34 -51.93 -0.33 0.72 16
40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
41 H 0.08 1.67 6.90 -51.93 -0.36 1.31 16
42 H 0.01 0.28 7.87 -51.93 -0.41 -0.13 16
43 H 0.07 1.40 6.78 -51.93 -0.35 1.05 16
44 H 0.08 1.64 8.00 -52.49 -0.42 1.22 16
45 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16
46 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16
47 H 0.12 3.14 6.30 -52.49 -0.33 2.81 16
48 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16
49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
50 H 0.08 1.22 8.03 -51.93 -0.42 0.81 16
51 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16
52 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
LS Contribution 400.08 15.07 6.03 6.03
Total: -1.00 -26.83 400.08 -13.36 -40.19
By element:
Atomic # 1 Polarization: 14.65 SS G_CDS: -9.61 Total: 5.03 kcal
Atomic # 6 Polarization: -21.60 SS G_CDS: -3.17 Total: -24.76 kcal
Atomic # 7 Polarization: -38.89 SS G_CDS: -1.58 Total: -40.47 kcal
Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -26.83 -13.36 -40.19 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001235522710.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.106 kcal
(2) G-P(sol) polarization free energy of solvation -26.835 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.271 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.358 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.913 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds