Wall clock time and date at job start Tue Mar 31 2020 11:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46807 * 2 1 4 4 C 1.53002 * 109.46807 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47073 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47061 * 179.97438 * 5 4 3 7 7 C 1.46958 * 111.00088 * 293.80157 * 6 5 4 8 8 C 1.53053 * 109.36119 * 176.81258 * 7 6 5 9 9 N 1.46951 * 109.36417 * 58.40264 * 8 7 6 10 10 C 1.46899 * 110.99878 * 176.81047 * 9 8 7 11 11 C 1.50702 * 109.47186 * 288.50214 * 10 9 8 12 12 C 1.37646 * 120.12602 * 104.23532 * 11 10 9 13 13 C 1.38614 * 120.24338 * 179.70085 * 12 11 10 14 14 C 1.38662 * 120.50115 * 0.60028 * 13 12 11 15 15 C 1.37598 * 120.25036 * 359.67866 * 14 13 12 16 16 C 1.40696 * 120.12861 * 284.50895 * 11 10 9 17 17 C 1.41398 * 120.24172 * 0.02562 * 16 11 10 18 18 H 1.07995 * 120.00154 * 330.61412 * 17 16 11 19 19 C 1.39945 * 120.00019 * 150.61448 * 17 16 11 20 20 N 1.30834 * 119.99779 * 348.48650 * 19 17 16 21 21 Si 1.86801 * 120.00160 * 168.48297 * 19 17 16 22 22 H 1.48495 * 109.46921 * 90.00405 * 21 19 17 23 23 H 1.48498 * 109.47086 * 210.00208 * 21 19 17 24 24 H 1.48496 * 109.47181 * 330.00358 * 21 19 17 25 25 C 1.46958 * 110.88108 * 300.67557 * 9 8 7 26 26 C 1.46960 * 110.99723 * 170.00388 * 6 5 4 27 27 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47194 * 300.00335 * 1 2 3 29 29 H 1.09005 * 109.47120 * 60.00369 * 1 2 3 30 30 H 1.09000 * 109.47194 * 239.99664 * 2 1 3 31 31 H 1.08996 * 109.46893 * 119.99583 * 2 1 3 32 32 H 1.08998 * 109.47568 * 299.99445 * 3 2 1 33 33 H 1.09000 * 109.47517 * 59.99862 * 3 2 1 34 34 H 1.09005 * 109.47120 * 299.99631 * 4 3 2 35 35 H 1.08997 * 109.47513 * 60.00065 * 4 3 2 36 36 H 1.08992 * 109.47229 * 300.00216 * 5 4 3 37 37 H 1.09000 * 109.47052 * 60.00473 * 5 4 3 38 38 H 1.09002 * 109.48786 * 296.78160 * 7 6 5 39 39 H 1.08998 * 109.48644 * 56.84145 * 7 6 5 40 40 H 1.09000 * 109.48835 * 298.42965 * 8 7 6 41 41 H 1.08997 * 109.48414 * 178.36773 * 8 7 6 42 42 H 1.09003 * 109.47293 * 48.50143 * 10 9 8 43 43 H 1.09003 * 109.47817 * 168.49973 * 10 9 8 44 44 H 1.07990 * 119.87529 * 359.97438 * 12 11 10 45 45 H 1.07995 * 119.74691 * 180.29864 * 13 12 11 46 46 H 1.07997 * 119.87161 * 179.69987 * 14 13 12 47 47 H 1.07988 * 120.12740 * 180.02562 * 15 14 13 48 48 H 0.96995 * 119.99279 * 179.97438 * 20 19 17 49 49 H 1.09002 * 109.48786 * 299.35364 * 25 9 8 50 50 H 1.08999 * 109.50809 * 179.30175 * 25 9 8 51 51 H 1.09005 * 109.48830 * 303.15525 * 26 6 5 52 52 H 1.08995 * 109.49028 * 63.22019 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 7 5.5490 2.8850 0.0012 7 6 6.0746 2.3322 1.2574 8 6 7.6025 2.2761 1.1870 9 7 8.1292 3.6270 0.9482 10 6 9.5982 3.6270 0.9494 11 6 10.0995 3.4179 2.3552 12 6 10.6055 2.1951 2.7335 13 6 11.0729 2.0019 4.0241 14 6 11.0252 3.0317 4.9514 15 6 10.5183 4.2608 4.5969 16 6 10.0467 4.4702 3.2876 17 6 9.5231 5.7289 2.9121 18 1 9.6015 6.0626 1.8880 19 6 8.9033 6.5422 3.8675 20 7 8.6053 6.0570 5.0454 21 14 8.5014 8.3206 3.4610 22 1 7.1397 8.3986 2.8739 23 1 8.5531 9.1357 4.7013 24 1 9.4919 8.8413 2.4849 25 6 7.6036 4.1798 -0.3079 26 6 6.0758 4.2360 -0.2375 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.9329 0.9288 0.8909 35 1 3.9337 0.9285 -0.8891 36 1 3.7170 3.3983 -0.8903 37 1 3.7163 3.3993 0.8896 38 1 5.7720 2.9682 2.0893 39 1 5.6801 1.3270 1.4055 40 1 7.9050 1.6184 0.3721 41 1 7.9960 1.8935 2.1287 42 1 9.9621 2.8224 0.3105 43 1 9.9620 4.5829 0.5724 44 1 10.6425 1.3845 2.0209 45 1 11.4727 1.0405 4.3109 46 1 11.3877 2.8685 5.9555 47 1 10.4825 5.0615 5.3206 48 1 8.1761 6.6208 5.7077 49 1 7.9063 3.5438 -1.1398 50 1 7.9980 5.1850 -0.4564 51 1 5.6822 4.6186 -1.1792 52 1 5.7732 4.8936 0.5774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235522710.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:57 Heat of formation + Delta-G solvation = -4.911179 kcal Electronic energy + Delta-G solvation = -26986.270052 eV Core-core repulsion = 23562.689124 eV Total energy + Delta-G solvation = -3423.580928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47673 -39.30075 -37.36584 -35.80360 -35.37698 -32.82600 -31.85855 -31.45687 -31.14501 -28.51233 -27.10022 -25.94209 -24.74055 -24.20081 -22.73400 -22.21276 -21.72864 -21.22227 -20.63213 -18.95336 -17.28580 -17.14611 -16.77085 -16.34272 -16.00810 -15.87073 -15.70199 -15.53369 -15.41525 -14.96437 -14.87172 -14.37435 -14.26167 -14.24944 -13.81581 -13.52025 -13.27112 -13.09751 -12.96988 -12.81674 -12.72127 -12.62332 -12.49443 -12.40165 -12.21271 -12.09540 -11.96144 -11.93430 -11.79035 -11.60002 -11.38541 -11.28638 -11.20861 -10.99291 -10.98148 -9.36886 -9.19724 -9.12719 -8.92021 -8.47693 -6.16348 1.04085 1.16237 1.39098 1.49982 1.55548 2.26019 2.87828 2.89825 3.18775 3.84589 3.86280 3.99595 4.02004 4.15347 4.21150 4.24358 4.30097 4.37049 4.40065 4.45954 4.54090 4.57905 4.61618 4.64751 4.66700 4.72516 4.76154 4.81458 4.86208 4.89648 4.94707 4.96853 5.03524 5.05986 5.09142 5.14093 5.18348 5.24541 5.31093 5.34537 5.42119 5.45932 5.52310 5.59044 5.84164 6.00720 6.06428 6.09576 6.20760 6.25791 6.39310 6.44778 6.54855 6.82502 7.11018 7.17952 8.49347 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.003382 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.419853 B = 8277.700531 C = 9202.315423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.108 4.108 5 C 0.055 3.945 6 N -0.537 5.537 7 C 0.067 3.933 8 C 0.072 3.928 9 N -0.538 5.538 10 C 0.138 3.862 11 C -0.191 4.191 12 C -0.093 4.093 13 C -0.242 4.242 14 C -0.116 4.116 15 C -0.190 4.190 16 C 0.101 3.899 17 C -0.453 4.453 18 H 0.072 0.928 19 C 0.034 3.966 20 N -0.838 5.838 21 Si 0.970 3.030 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.257 1.257 25 C 0.062 3.938 26 C 0.063 3.937 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.021 0.979 38 H 0.013 0.987 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.279 0.721 49 H 0.042 0.958 50 H 0.075 0.925 51 H 0.099 0.901 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 -6.665 -11.053 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.146 4.146 5 C -0.072 4.072 6 N -0.262 5.262 7 C -0.062 4.062 8 C -0.057 4.057 9 N -0.263 5.263 10 C 0.011 3.989 11 C -0.193 4.193 12 C -0.112 4.112 13 C -0.261 4.261 14 C -0.135 4.135 15 C -0.210 4.210 16 C 0.098 3.902 17 C -0.484 4.484 18 H 0.091 0.909 19 C -0.178 4.178 20 N -0.466 5.466 21 Si 0.792 3.208 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.066 4.066 26 C -0.065 4.065 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.039 0.961 38 H 0.031 0.969 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.120 0.880 47 H 0.113 0.887 48 H 0.089 0.911 49 H 0.060 0.940 50 H 0.093 0.907 51 H 0.117 0.883 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -11.560 -6.580 -10.856 17.169 hybrid contribution -0.041 0.922 0.657 1.133 sum -11.602 -5.657 -10.199 16.450 Atomic orbital electron populations 1.21777 0.95375 1.01930 1.01888 1.21513 0.96254 0.96385 1.02018 1.21541 0.94232 0.97333 1.02101 1.21539 0.95560 0.95249 1.02269 1.22182 0.86163 0.98164 1.00703 1.62277 1.08295 1.21881 1.33710 1.22075 0.94317 0.99863 0.89923 1.21943 0.94246 0.89486 1.00001 1.61977 1.07848 1.22133 1.34326 1.20439 0.86337 0.99247 0.92880 1.19850 1.08648 0.93803 0.96974 1.20705 0.98858 0.95804 0.95832 1.20687 1.11662 0.99010 0.94718 1.20933 1.00119 0.94150 0.98282 1.21323 1.04211 0.97022 0.98427 1.17709 0.88317 0.92838 0.91298 1.19498 1.32371 1.00660 0.95831 0.90946 1.26569 0.93693 1.03477 0.94087 1.69900 1.32411 1.38073 1.06234 0.85390 0.79210 0.77558 0.78646 1.19467 1.19901 1.18091 1.22120 0.94559 0.99812 0.90151 1.22128 0.94459 0.89105 1.00853 0.92298 0.92968 0.92382 0.91699 0.92499 0.91283 0.92600 0.92754 0.91130 0.89652 0.96109 0.96861 0.89088 0.94370 0.92361 0.95070 0.91991 0.87176 0.86944 0.87964 0.88674 0.91080 0.94021 0.90708 0.88304 0.96256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.12 -1.82 5.93 30.59 0.18 -1.63 16 3 C -0.11 -1.83 5.21 30.59 0.16 -1.67 16 4 C -0.11 -2.10 5.15 30.60 0.16 -1.94 16 5 C 0.06 1.26 4.96 86.30 0.43 1.69 16 6 N -0.54 -14.87 4.71 -895.69 -4.22 -19.09 16 7 C 0.07 2.11 5.41 86.31 0.47 2.58 16 8 C 0.07 2.54 5.44 86.31 0.47 3.01 16 9 N -0.54 -20.77 4.59 -900.29 -4.13 -24.90 16 10 C 0.14 5.54 4.45 85.56 0.38 5.92 16 11 C -0.19 -8.94 4.73 -19.40 -0.09 -9.03 16 12 C -0.09 -4.04 9.03 22.22 0.20 -3.84 16 13 C -0.24 -10.59 10.05 22.46 0.23 -10.37 16 14 C -0.12 -5.56 10.02 22.22 0.22 -5.34 16 15 C -0.19 -10.24 8.65 22.73 0.20 -10.05 16 16 C 0.10 5.39 5.54 -21.29 -0.12 5.27 16 17 C -0.45 -24.03 8.36 23.46 0.20 -23.83 16 18 H 0.07 3.73 6.65 -2.91 -0.02 3.71 16 19 C 0.03 1.75 5.24 85.26 0.45 2.20 16 20 N -0.84 -45.46 10.93 21.83 0.24 -45.22 16 21 Si 0.97 39.75 29.58 68.60 2.03 41.78 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 25 C 0.06 1.96 5.59 86.31 0.48 2.44 16 26 C 0.06 1.82 5.61 86.31 0.48 2.30 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.15 6.49 -2.38 -0.02 1.13 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.69 8.03 -2.39 -0.02 1.67 16 37 H 0.02 0.52 8.12 -2.39 -0.02 0.50 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.09 2.53 6.34 -2.39 -0.02 2.51 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 2.34 6.90 -2.39 -0.02 2.32 16 42 H 0.03 1.14 7.87 -2.39 -0.02 1.12 16 43 H 0.06 2.54 6.78 -2.39 -0.02 2.52 16 44 H 0.11 4.11 8.00 -2.92 -0.02 4.09 16 45 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 46 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 47 H 0.10 5.43 6.30 -2.92 -0.02 5.41 16 48 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 49 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 51 H 0.10 2.30 8.07 -2.38 -0.02 2.28 16 52 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -58.79 400.08 -0.03 -58.82 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.85 Total: 32.14 kcal Atomic # 6 Polarization: -48.74 SS G_CDS: 5.20 Total: -43.54 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -8.11 Total: -89.21 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -58.79 -0.03 -58.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522710.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.908 kcal (2) G-P(sol) polarization free energy of solvation -58.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds