Wall clock time and date at job start Tue Mar 31 2020 11:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.46971 * 2 1 4 4 C 1.46905 * 110.99681 * 166.21737 * 3 2 1 5 5 C 1.52998 * 109.46978 * 287.80132 * 4 3 2 6 6 C 1.46900 * 111.00117 * 290.16747 * 3 2 1 7 7 C 1.53118 * 109.52267 * 174.99798 * 6 3 2 8 8 C 1.53035 * 109.27965 * 177.56307 * 7 6 3 9 9 N 1.46851 * 109.51965 * 300.82155 * 8 7 6 10 10 C 1.46908 * 110.99693 * 185.83969 * 9 8 7 11 11 C 1.50702 * 109.46772 * 166.08628 * 10 9 8 12 12 C 1.37640 * 120.12416 * 103.68824 * 11 10 9 13 13 C 1.38619 * 120.24118 * 180.27618 * 12 11 10 14 14 C 1.38652 * 120.50245 * 359.73955 * 13 12 11 15 15 C 1.37588 * 120.25035 * 359.97438 * 14 13 12 16 16 C 1.40691 * 120.12887 * 283.44951 * 11 10 9 17 17 C 1.41402 * 120.24535 * 0.02562 * 16 11 10 18 18 H 1.08006 * 119.99488 * 28.30997 * 17 16 11 19 19 C 1.39944 * 120.00111 * 208.31607 * 17 16 11 20 20 N 1.30819 * 120.00061 * 13.44117 * 19 17 16 21 21 Si 1.86803 * 119.99751 * 193.44663 * 19 17 16 22 22 H 1.48501 * 109.47386 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47212 * 119.99913 * 21 19 17 24 24 H 1.48503 * 109.46877 * 240.00032 * 21 19 17 25 25 C 1.46846 * 111.19911 * 61.74266 * 9 8 7 26 26 C 1.53032 * 109.52385 * 298.25677 * 25 9 8 27 27 H 1.09006 * 109.47107 * 186.87394 * 1 2 3 28 28 H 1.08994 * 109.47156 * 306.86804 * 1 2 3 29 29 H 1.08994 * 109.47455 * 66.87184 * 1 2 3 30 30 H 1.09011 * 109.46998 * 240.00714 * 2 1 3 31 31 H 1.08995 * 109.47743 * 120.00617 * 2 1 3 32 32 H 1.08991 * 109.47319 * 47.80860 * 4 3 2 33 33 H 1.09003 * 109.46402 * 167.81001 * 4 3 2 34 34 H 1.09003 * 109.46865 * 67.10423 * 5 4 3 35 35 H 1.09000 * 109.47441 * 187.10249 * 5 4 3 36 36 H 1.08997 * 109.47580 * 307.10920 * 5 4 3 37 37 H 1.09001 * 109.52202 * 54.87384 * 6 3 2 38 38 H 1.09004 * 109.49967 * 57.62109 * 7 6 3 39 39 H 1.09004 * 109.53659 * 297.52405 * 7 6 3 40 40 H 1.08995 * 109.46218 * 180.80694 * 8 7 6 41 41 H 1.08993 * 109.45432 * 60.83190 * 8 7 6 42 42 H 1.08999 * 109.46942 * 46.08305 * 10 9 8 43 43 H 1.08996 * 109.46954 * 286.08365 * 10 9 8 44 44 H 1.07992 * 119.88002 * 0.02562 * 12 11 10 45 45 H 1.07998 * 119.74317 * 179.71668 * 13 12 11 46 46 H 1.08003 * 119.87512 * 179.97438 * 14 13 12 47 47 H 1.08002 * 120.12749 * 180.02562 * 15 14 13 48 48 H 0.97004 * 119.99900 * 179.97438 * 20 19 17 49 49 H 1.09001 * 109.45918 * 58.27247 * 25 9 8 50 50 H 1.09003 * 109.46229 * 178.23594 * 25 9 8 51 51 H 1.08998 * 109.50263 * 299.23624 * 26 25 9 52 52 H 1.08998 * 109.50551 * 179.11933 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4509 1.4374 0.3267 5 6 3.6467 1.1253 1.8117 6 6 1.7493 2.0390 -1.2873 7 6 2.1586 3.5124 -1.2087 8 6 1.9316 4.1732 -2.5702 9 7 2.7271 3.4794 -3.5912 10 6 2.6421 4.1709 -4.8845 11 6 3.7159 3.6495 -5.8044 12 6 3.3936 2.7727 -6.8152 13 6 4.3803 2.2871 -7.6592 14 6 5.6999 2.6816 -7.4994 15 6 6.0440 3.5617 -6.4994 16 6 5.0508 4.0609 -5.6363 17 6 5.3929 4.9648 -4.6041 18 1 4.8057 4.9973 -3.6982 19 6 6.4923 5.8172 -4.7564 20 7 7.0417 5.9722 -5.9335 21 14 7.1753 6.7335 -3.2788 22 1 6.3815 6.3886 -2.0721 23 1 8.5927 6.3448 -3.0671 24 1 7.0942 8.1962 -3.5226 25 6 2.3193 2.0744 -3.7179 26 6 2.5578 1.3509 -2.3906 27 1 -0.3633 -1.0203 0.1230 28 1 -0.3633 0.6165 0.8221 29 1 -0.3634 0.4036 -0.9450 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.9876 0.7023 -0.2729 33 1 3.8365 2.4338 0.1110 34 1 3.3784 0.0862 2.0030 35 1 4.6901 1.2868 2.0825 36 1 3.0111 1.7802 2.4076 37 1 0.6858 1.9681 -1.5157 38 1 3.2129 3.5833 -0.9410 39 1 1.5566 4.0182 -0.4538 40 1 2.2355 5.2188 -2.5216 41 1 0.8749 4.1139 -2.8309 42 1 2.7810 5.2415 -4.7339 43 1 1.6636 3.9906 -5.3293 44 1 2.3690 2.4588 -6.9489 45 1 4.1191 1.5959 -8.4468 46 1 6.4605 2.2966 -8.1625 47 1 7.0724 3.8680 -6.3770 48 1 7.8035 6.5634 -6.0390 49 1 1.2608 2.0251 -3.9732 50 1 2.9047 1.5957 -4.5029 51 1 3.6183 1.3879 -2.1415 52 1 2.2405 0.3120 -2.4803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:12 Heat of formation + Delta-G solvation = 19.362372 kcal Electronic energy + Delta-G solvation = -27871.694447 eV Core-core repulsion = 24449.166099 eV Total energy + Delta-G solvation = -3422.528348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.68637 -37.90271 -36.49312 -33.53457 -32.67399 -31.98342 -30.51256 -30.03340 -29.33617 -28.01019 -25.54152 -24.50944 -23.36271 -22.83134 -22.41466 -20.89457 -20.63039 -19.37781 -18.66084 -17.06186 -16.26284 -15.52326 -15.36171 -14.94299 -14.76429 -14.57250 -14.36923 -14.20607 -13.94854 -13.50892 -13.27032 -13.18285 -12.67732 -12.52278 -12.41962 -12.18089 -11.99617 -11.80530 -11.66936 -11.55202 -11.50467 -11.40021 -11.17686 -11.09484 -10.97333 -10.78970 -10.67249 -10.46264 -10.37983 -10.31811 -10.18772 -10.00136 -9.45100 -9.22491 -9.13014 -8.18002 -7.61793 -7.29934 -7.21531 -6.64691 -4.25082 2.82608 3.00615 3.13136 3.19228 3.28989 3.89812 4.01487 4.52901 4.75962 4.87286 4.92005 5.08244 5.13154 5.20990 5.34887 5.41159 5.43989 5.51280 5.59609 5.61080 5.66167 5.69054 5.80041 5.86763 5.91560 5.93558 5.93861 6.03121 6.06158 6.11203 6.15713 6.19577 6.25353 6.30240 6.33108 6.38969 6.44031 6.52427 6.59218 6.62666 6.90023 7.15032 7.18700 7.19311 7.33108 7.44721 7.68186 7.72285 7.80754 8.00944 8.13757 8.22762 8.39850 8.76583 9.02722 9.09104 10.30575 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.004359 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.423009 B = 6421.397687 C = 7715.813575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.041 3.959 5 C -0.145 4.145 6 C 0.085 3.915 7 C -0.107 4.107 8 C 0.057 3.943 9 N -0.520 5.520 10 C 0.127 3.873 11 C -0.189 4.189 12 C -0.089 4.089 13 C -0.244 4.244 14 C -0.109 4.109 15 C -0.160 4.160 16 C 0.132 3.868 17 C -0.445 4.445 18 H 0.091 0.909 19 C 0.072 3.928 20 N -0.803 5.803 21 Si 0.903 3.097 22 H -0.259 1.259 23 H -0.275 1.275 24 H -0.277 1.277 25 C 0.066 3.934 26 C -0.146 4.146 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.075 0.925 43 H 0.014 0.986 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.115 0.885 48 H 0.276 0.724 49 H 0.018 0.982 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 -6.892 10.896 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.255 5.255 4 C -0.086 4.086 5 C -0.203 4.203 6 C -0.024 4.024 7 C -0.145 4.145 8 C -0.071 4.071 9 N -0.245 5.245 10 C 0.001 3.999 11 C -0.191 4.191 12 C -0.108 4.108 13 C -0.263 4.263 14 C -0.127 4.127 15 C -0.180 4.180 16 C 0.129 3.871 17 C -0.475 4.475 18 H 0.109 0.891 19 C -0.144 4.144 20 N -0.429 5.429 21 Si 0.728 3.272 22 H -0.183 1.183 23 H -0.200 1.200 24 H -0.203 1.203 25 C -0.062 4.062 26 C -0.185 4.185 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.093 0.907 43 H 0.032 0.968 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.133 0.867 48 H 0.087 0.913 49 H 0.037 0.963 50 H 0.099 0.901 51 H 0.092 0.908 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.100 -6.479 11.335 15.364 hybrid contribution 0.060 -0.077 -0.516 0.525 sum -8.040 -6.556 10.819 14.989 Atomic orbital electron populations 1.21760 0.95237 1.01176 1.02208 1.22129 0.95869 0.89665 1.00746 1.62355 1.16339 1.16069 1.30773 1.22181 0.88279 1.02225 0.95964 1.21778 1.01172 1.01188 0.96146 1.21791 0.99253 0.94373 0.86961 1.21670 1.02435 0.93858 0.96560 1.22038 0.94662 0.98546 0.91895 1.61918 1.53952 1.01164 1.07446 1.20598 0.94290 0.98098 0.86881 1.19487 0.94142 1.06030 0.99469 1.20368 0.96411 0.97765 0.96269 1.20288 0.93901 1.08184 1.03959 1.20668 0.95004 0.98744 0.98308 1.21340 0.99751 0.98841 0.98031 1.17368 0.89360 0.89394 0.90941 1.19769 1.09477 1.15357 1.02913 0.89061 1.25950 0.95747 0.96525 0.96214 1.69833 1.19301 1.30843 1.22946 0.86344 0.79312 0.78982 0.82567 1.18297 1.20042 1.20306 1.21901 0.97314 0.89930 0.97103 1.22235 1.01760 0.98495 0.96041 0.92717 0.91971 0.92915 0.94458 0.91097 0.94583 0.89835 0.93319 0.92521 0.92014 0.90532 0.90703 0.91498 0.90657 0.95999 0.90714 0.96817 0.90086 0.89931 0.89805 0.86729 0.91276 0.96349 0.90125 0.90760 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.77 37.15 0.36 -1.01 16 2 C 0.04 0.46 5.40 -3.82 -0.02 0.44 16 3 N -0.53 -6.28 4.42 -226.50 -1.00 -7.29 16 4 C 0.04 0.49 4.59 -3.82 -0.02 0.47 16 5 C -0.15 -1.45 9.85 37.16 0.37 -1.08 16 6 C 0.08 1.09 2.17 -67.59 -0.15 0.94 16 7 C -0.11 -1.47 5.29 -26.65 -0.14 -1.61 16 8 C 0.06 0.88 5.45 -3.83 -0.02 0.86 16 9 N -0.52 -9.42 4.09 -236.11 -0.96 -10.38 16 10 C 0.13 2.56 4.29 -4.97 -0.02 2.54 16 11 C -0.19 -4.40 4.67 -103.91 -0.49 -4.89 16 12 C -0.09 -1.99 8.88 -39.66 -0.35 -2.34 16 13 C -0.24 -5.52 10.05 -39.29 -0.39 -5.92 16 14 C -0.11 -2.59 10.02 -39.67 -0.40 -2.99 16 15 C -0.16 -4.17 8.66 -38.88 -0.34 -4.51 16 16 C 0.13 3.42 5.54 -106.83 -0.59 2.83 16 17 C -0.45 -11.41 8.17 -37.74 -0.31 -11.72 16 18 H 0.09 2.29 6.78 -52.48 -0.36 1.94 16 19 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 20 N -0.80 -20.78 10.98 55.55 0.61 -20.18 16 21 Si 0.90 18.83 29.58 -169.99 -5.03 13.80 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.07 1.10 5.30 -3.84 -0.02 1.08 16 26 C -0.15 -2.10 4.74 -26.65 -0.13 -2.22 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.52 6.88 -51.93 -0.36 0.16 16 30 H 0.04 0.41 6.11 -51.92 -0.32 0.10 16 31 H 0.07 0.69 6.46 -51.93 -0.34 0.35 16 32 H 0.04 0.45 7.10 -51.93 -0.37 0.08 16 33 H 0.08 1.08 5.63 -51.93 -0.29 0.79 16 34 H 0.05 0.45 6.83 -51.93 -0.35 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.99 6.57 -51.93 -0.34 0.65 16 38 H 0.07 1.12 6.02 -51.93 -0.31 0.81 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.17 7.97 -51.93 -0.41 0.76 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 1.57 7.34 -51.93 -0.38 1.19 16 43 H 0.01 0.26 7.90 -51.93 -0.41 -0.15 16 44 H 0.08 1.62 8.00 -52.49 -0.42 1.20 16 45 H 0.08 1.68 8.06 -52.49 -0.42 1.25 16 46 H 0.08 1.81 8.06 -52.48 -0.42 1.39 16 47 H 0.11 3.10 6.31 -52.49 -0.33 2.77 16 48 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 49 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.08 1.52 6.65 -51.93 -0.35 1.17 16 51 H 0.07 1.19 6.64 -51.93 -0.34 0.85 16 52 H 0.06 0.78 6.47 -51.93 -0.34 0.44 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -26.22 385.50 -12.28 -38.49 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.96 Total: 7.18 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -2.74 Total: -27.44 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -1.36 Total: -37.84 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -26.22 -12.28 -38.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.855 kcal (2) G-P(sol) polarization free energy of solvation -26.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds