Wall clock time and date at job start Tue Mar 31 2020 11:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.46971 * 2 1 4 4 C 1.46905 * 110.99681 * 166.21737 * 3 2 1 5 5 C 1.52998 * 109.46978 * 287.80132 * 4 3 2 6 6 C 1.46900 * 111.00117 * 290.16747 * 3 2 1 7 7 C 1.53118 * 109.52267 * 174.99798 * 6 3 2 8 8 C 1.53035 * 109.27965 * 177.56307 * 7 6 3 9 9 N 1.46851 * 109.51965 * 300.82155 * 8 7 6 10 10 C 1.46908 * 110.99693 * 185.83969 * 9 8 7 11 11 C 1.50702 * 109.46772 * 166.08628 * 10 9 8 12 12 C 1.37640 * 120.12416 * 103.68824 * 11 10 9 13 13 C 1.38619 * 120.24118 * 180.27618 * 12 11 10 14 14 C 1.38652 * 120.50245 * 359.73955 * 13 12 11 15 15 C 1.37588 * 120.25035 * 359.97438 * 14 13 12 16 16 C 1.40691 * 120.12887 * 283.44951 * 11 10 9 17 17 C 1.41402 * 120.24535 * 0.02562 * 16 11 10 18 18 H 1.08006 * 119.99488 * 28.30997 * 17 16 11 19 19 C 1.39944 * 120.00111 * 208.31607 * 17 16 11 20 20 N 1.30819 * 120.00061 * 13.44117 * 19 17 16 21 21 Si 1.86803 * 119.99751 * 193.44663 * 19 17 16 22 22 H 1.48501 * 109.47386 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47212 * 119.99913 * 21 19 17 24 24 H 1.48503 * 109.46877 * 240.00032 * 21 19 17 25 25 C 1.46846 * 111.19911 * 61.74266 * 9 8 7 26 26 C 1.53032 * 109.52385 * 298.25677 * 25 9 8 27 27 H 1.09006 * 109.47107 * 186.87394 * 1 2 3 28 28 H 1.08994 * 109.47156 * 306.86804 * 1 2 3 29 29 H 1.08994 * 109.47455 * 66.87184 * 1 2 3 30 30 H 1.09011 * 109.46998 * 240.00714 * 2 1 3 31 31 H 1.08995 * 109.47743 * 120.00617 * 2 1 3 32 32 H 1.08991 * 109.47319 * 47.80860 * 4 3 2 33 33 H 1.09003 * 109.46402 * 167.81001 * 4 3 2 34 34 H 1.09003 * 109.46865 * 67.10423 * 5 4 3 35 35 H 1.09000 * 109.47441 * 187.10249 * 5 4 3 36 36 H 1.08997 * 109.47580 * 307.10920 * 5 4 3 37 37 H 1.09001 * 109.52202 * 54.87384 * 6 3 2 38 38 H 1.09004 * 109.49967 * 57.62109 * 7 6 3 39 39 H 1.09004 * 109.53659 * 297.52405 * 7 6 3 40 40 H 1.08995 * 109.46218 * 180.80694 * 8 7 6 41 41 H 1.08993 * 109.45432 * 60.83190 * 8 7 6 42 42 H 1.08999 * 109.46942 * 46.08305 * 10 9 8 43 43 H 1.08996 * 109.46954 * 286.08365 * 10 9 8 44 44 H 1.07992 * 119.88002 * 0.02562 * 12 11 10 45 45 H 1.07998 * 119.74317 * 179.71668 * 13 12 11 46 46 H 1.08003 * 119.87512 * 179.97438 * 14 13 12 47 47 H 1.08002 * 120.12749 * 180.02562 * 15 14 13 48 48 H 0.97004 * 119.99900 * 179.97438 * 20 19 17 49 49 H 1.09001 * 109.45918 * 58.27247 * 25 9 8 50 50 H 1.09003 * 109.46229 * 178.23594 * 25 9 8 51 51 H 1.08998 * 109.50263 * 299.23624 * 26 25 9 52 52 H 1.08998 * 109.50551 * 179.11933 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4509 1.4374 0.3267 5 6 3.6467 1.1253 1.8117 6 6 1.7493 2.0390 -1.2873 7 6 2.1586 3.5124 -1.2087 8 6 1.9316 4.1732 -2.5702 9 7 2.7271 3.4794 -3.5912 10 6 2.6421 4.1709 -4.8845 11 6 3.7159 3.6495 -5.8044 12 6 3.3936 2.7727 -6.8152 13 6 4.3803 2.2871 -7.6592 14 6 5.6999 2.6816 -7.4994 15 6 6.0440 3.5617 -6.4994 16 6 5.0508 4.0609 -5.6363 17 6 5.3929 4.9648 -4.6041 18 1 4.8057 4.9973 -3.6982 19 6 6.4923 5.8172 -4.7564 20 7 7.0417 5.9722 -5.9335 21 14 7.1753 6.7335 -3.2788 22 1 6.3815 6.3886 -2.0721 23 1 8.5927 6.3448 -3.0671 24 1 7.0942 8.1962 -3.5226 25 6 2.3193 2.0744 -3.7179 26 6 2.5578 1.3509 -2.3906 27 1 -0.3633 -1.0203 0.1230 28 1 -0.3633 0.6165 0.8221 29 1 -0.3634 0.4036 -0.9450 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.9876 0.7023 -0.2729 33 1 3.8365 2.4338 0.1110 34 1 3.3784 0.0862 2.0030 35 1 4.6901 1.2868 2.0825 36 1 3.0111 1.7802 2.4076 37 1 0.6858 1.9681 -1.5157 38 1 3.2129 3.5833 -0.9410 39 1 1.5566 4.0182 -0.4538 40 1 2.2355 5.2188 -2.5216 41 1 0.8749 4.1139 -2.8309 42 1 2.7810 5.2415 -4.7339 43 1 1.6636 3.9906 -5.3293 44 1 2.3690 2.4588 -6.9489 45 1 4.1191 1.5959 -8.4468 46 1 6.4605 2.2966 -8.1625 47 1 7.0724 3.8680 -6.3770 48 1 7.8035 6.5634 -6.0390 49 1 1.2608 2.0251 -3.9732 50 1 2.9047 1.5957 -4.5029 51 1 3.6183 1.3879 -2.1415 52 1 2.2405 0.3120 -2.4803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:11 Heat of formation + Delta-G solvation = 6.943867 kcal Electronic energy + Delta-G solvation = -27872.232954 eV Core-core repulsion = 24449.166099 eV Total energy + Delta-G solvation = -3423.066855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85316 -39.53322 -37.83894 -35.41295 -34.00613 -32.82718 -31.73576 -31.61907 -31.12787 -29.10700 -27.28533 -26.05296 -24.45906 -23.86019 -23.63246 -22.73702 -21.80744 -21.12653 -19.74389 -18.95439 -17.40251 -17.10586 -16.53109 -16.28894 -16.12943 -16.02044 -15.65126 -15.41767 -15.27567 -14.98560 -14.62396 -14.53537 -14.33186 -13.79048 -13.48632 -13.33207 -13.28726 -13.08951 -13.02007 -12.86243 -12.72689 -12.63296 -12.60312 -12.43296 -12.35935 -12.25470 -12.13033 -12.00629 -11.73600 -11.42588 -11.35007 -11.27817 -11.10619 -11.01172 -10.99844 -9.23340 -9.14299 -9.12851 -8.94153 -8.51423 -6.19874 1.02728 1.15446 1.40476 1.54027 1.55079 2.26055 2.83525 2.95149 3.19076 3.79960 3.90614 3.93194 4.02955 4.15982 4.25045 4.31250 4.33417 4.38330 4.40995 4.52946 4.55695 4.57690 4.59459 4.66117 4.69598 4.70687 4.76926 4.81792 4.84006 4.89703 4.99763 5.06320 5.09604 5.12213 5.13872 5.16142 5.19905 5.26926 5.30981 5.37269 5.42008 5.43248 5.46792 5.58433 5.83623 6.06215 6.16575 6.22814 6.25168 6.29094 6.38860 6.45478 6.53492 6.84477 7.11572 7.18378 8.45823 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.004359 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.423009 B = 6421.397687 C = 7715.813575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.530 5.530 4 C 0.041 3.959 5 C -0.138 4.138 6 C 0.093 3.907 7 C -0.100 4.100 8 C 0.059 3.941 9 N -0.537 5.537 10 C 0.136 3.864 11 C -0.190 4.190 12 C -0.093 4.093 13 C -0.243 4.243 14 C -0.117 4.117 15 C -0.191 4.191 16 C 0.103 3.897 17 C -0.467 4.467 18 H 0.088 0.912 19 C 0.031 3.969 20 N -0.837 5.837 21 Si 0.970 3.030 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.270 1.270 25 C 0.071 3.929 26 C -0.136 4.136 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.281 0.719 49 H 0.032 0.968 50 H 0.054 0.946 51 H 0.052 0.948 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 -7.754 12.261 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 N -0.254 5.254 4 C -0.087 4.087 5 C -0.196 4.196 6 C -0.015 4.015 7 C -0.138 4.138 8 C -0.069 4.069 9 N -0.262 5.262 10 C 0.009 3.991 11 C -0.192 4.192 12 C -0.112 4.112 13 C -0.262 4.262 14 C -0.136 4.136 15 C -0.210 4.210 16 C 0.101 3.899 17 C -0.497 4.497 18 H 0.106 0.894 19 C -0.182 4.182 20 N -0.465 5.465 21 Si 0.793 3.207 22 H -0.180 1.180 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.058 4.058 26 C -0.175 4.175 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.111 0.889 48 H 0.092 0.908 49 H 0.050 0.950 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.953 -7.355 12.703 17.735 hybrid contribution 0.573 0.095 -1.015 1.169 sum -9.380 -7.260 11.688 16.652 Atomic orbital electron populations 1.21724 0.94114 1.02159 1.01878 1.22215 0.96750 0.88662 1.00938 1.62408 1.16166 1.17063 1.29715 1.22171 0.88245 1.01072 0.97176 1.21717 1.01615 1.01718 0.94517 1.21681 0.99216 0.93669 0.86971 1.21603 1.01752 0.94608 0.95878 1.22067 0.94993 0.98063 0.91814 1.61801 1.55524 1.01971 1.06917 1.20434 0.93831 0.97232 0.87607 1.19868 0.94041 1.05346 0.99963 1.20698 0.97821 0.97125 0.95562 1.20663 0.93299 1.07906 1.04318 1.20917 0.96380 0.98290 0.98005 1.21310 0.99050 1.00746 0.99926 1.17702 0.90590 0.90159 0.91492 1.19887 1.10578 1.16212 1.03029 0.89363 1.26700 0.95668 0.97139 0.98657 1.69905 1.19979 1.31881 1.24725 0.85324 0.78463 0.77858 0.79094 1.18021 1.19694 1.19531 1.21844 0.97451 0.88992 0.97506 1.22142 1.00763 0.99142 0.95491 0.91177 0.92048 0.93387 0.95052 0.90129 0.95629 0.91325 0.92384 0.91956 0.91971 0.89664 0.92353 0.89889 0.91349 0.94468 0.92203 0.95285 0.87298 0.87062 0.88046 0.88878 0.90837 0.94964 0.92709 0.92941 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.77 71.98 0.70 -1.55 16 2 C 0.04 0.78 5.40 86.30 0.47 1.25 16 3 N -0.53 -11.59 4.42 -870.51 -3.85 -15.44 16 4 C 0.04 0.94 4.59 86.30 0.40 1.33 16 5 C -0.14 -2.52 9.85 71.98 0.71 -1.82 16 6 C 0.09 2.24 2.17 44.99 0.10 2.34 16 7 C -0.10 -2.63 5.29 30.65 0.16 -2.47 16 8 C 0.06 1.74 5.45 86.32 0.47 2.21 16 9 N -0.54 -19.26 4.09 -900.93 -3.68 -22.95 16 10 C 0.14 5.42 4.29 85.56 0.37 5.79 16 11 C -0.19 -8.89 4.67 -19.41 -0.09 -8.98 16 12 C -0.09 -4.05 8.88 22.22 0.20 -3.85 16 13 C -0.24 -10.68 10.05 22.46 0.23 -10.46 16 14 C -0.12 -5.64 10.02 22.21 0.22 -5.42 16 15 C -0.19 -10.30 8.66 22.73 0.20 -10.10 16 16 C 0.10 5.50 5.54 -21.29 -0.12 5.38 16 17 C -0.47 -24.75 8.17 23.46 0.19 -24.56 16 18 H 0.09 4.58 6.78 -2.91 -0.02 4.56 16 19 C 0.03 1.59 5.20 85.26 0.44 2.03 16 20 N -0.84 -44.90 10.98 21.83 0.24 -44.66 16 21 Si 0.97 39.47 29.58 68.60 2.03 41.50 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 25 C 0.07 2.28 5.30 86.32 0.46 2.74 16 26 C -0.14 -3.79 4.74 30.64 0.15 -3.64 16 27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.81 6.88 -2.39 -0.02 0.80 16 30 H 0.03 0.63 6.11 -2.38 -0.01 0.62 16 31 H 0.08 1.36 6.46 -2.39 -0.02 1.35 16 32 H 0.03 0.63 7.10 -2.39 -0.02 0.61 16 33 H 0.07 1.77 5.63 -2.39 -0.01 1.76 16 34 H 0.06 0.95 6.83 -2.39 -0.02 0.93 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.96 6.57 -2.39 -0.02 1.95 16 38 H 0.06 1.74 6.02 -2.38 -0.01 1.73 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.10 7.97 -2.39 -0.02 2.08 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.06 2.55 7.34 -2.39 -0.02 2.53 16 43 H 0.03 1.05 7.90 -2.39 -0.02 1.04 16 44 H 0.11 4.07 8.00 -2.91 -0.02 4.05 16 45 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16 46 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 47 H 0.09 5.33 6.31 -2.91 -0.02 5.31 16 48 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 49 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.05 2.04 6.65 -2.39 -0.02 2.03 16 51 H 0.05 1.69 6.64 -2.39 -0.02 1.68 16 52 H 0.07 1.78 6.47 -2.39 -0.02 1.77 16 Total: -1.00 -57.46 385.50 0.86 -56.60 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.88 Total: 34.72 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 5.24 Total: -49.77 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -7.29 Total: -83.05 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -57.46 0.86 -56.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.545 kcal (2) G-P(sol) polarization free energy of solvation -57.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds