Wall clock time and date at job start Tue Mar 31 2020 11:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.47014 * 2 1 4 4 C 1.46896 * 110.99925 * 75.55358 * 3 2 1 5 5 C 1.53005 * 109.47071 * 199.46285 * 4 3 2 6 6 N 1.46894 * 109.47121 * 174.09599 * 5 4 3 7 7 C 1.46850 * 110.99797 * 169.99571 * 6 5 4 8 8 C 1.53045 * 109.52218 * 174.16236 * 7 6 5 9 9 C 1.53115 * 109.27817 * 59.18160 * 8 7 6 10 10 C 1.53123 * 109.16291 * 302.34630 * 9 8 7 11 11 C 1.46846 * 111.00027 * 45.79137 * 6 5 4 12 12 C 1.46899 * 110.99895 * 199.50340 * 3 2 1 13 13 C 1.50703 * 109.46934 * 66.04758 * 12 3 2 14 14 C 1.37641 * 120.12588 * 259.99712 * 13 12 3 15 15 C 1.38617 * 120.24780 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.49965 * 0.02673 * 15 14 13 17 17 C 1.37594 * 120.25085 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.13037 * 79.72700 * 13 12 3 19 19 C 1.41402 * 120.24107 * 359.97438 * 18 13 12 20 20 H 1.08001 * 119.99875 * 325.30564 * 19 18 13 21 21 C 1.39940 * 119.99792 * 145.31189 * 19 18 13 22 22 N 1.30823 * 120.00363 * 3.94334 * 21 19 18 23 23 Si 1.86807 * 119.99939 * 183.95030 * 21 19 18 24 24 H 1.48502 * 109.47211 * 59.99474 * 23 21 19 25 25 H 1.48499 * 109.47367 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46652 * 299.99941 * 23 21 19 27 27 H 1.08997 * 109.47235 * 64.89659 * 1 2 3 28 28 H 1.09001 * 109.46931 * 184.90254 * 1 2 3 29 29 H 1.09003 * 109.47052 * 304.89513 * 1 2 3 30 30 H 1.09000 * 109.46950 * 240.00069 * 2 1 3 31 31 H 1.09001 * 109.47428 * 120.00070 * 2 1 3 32 32 H 1.09003 * 109.47268 * 79.46325 * 4 3 2 33 33 H 1.09001 * 109.47300 * 319.45764 * 4 3 2 34 34 H 1.08999 * 109.46753 * 54.09718 * 5 4 3 35 35 H 1.09003 * 109.46915 * 294.09861 * 5 4 3 36 36 H 1.08999 * 109.46118 * 54.14865 * 7 6 5 37 37 H 1.08997 * 109.46686 * 294.17956 * 7 6 5 38 38 H 1.08997 * 109.50360 * 179.12394 * 8 7 6 39 39 H 1.09004 * 109.50244 * 299.24332 * 8 7 6 40 40 H 1.08998 * 109.52322 * 62.25257 * 9 8 7 41 41 H 1.09003 * 109.52228 * 182.44335 * 9 8 7 42 42 H 1.09000 * 109.50594 * 177.59677 * 10 9 8 43 43 H 1.09003 * 109.49942 * 297.71703 * 10 9 8 44 44 H 1.09007 * 109.46635 * 65.81935 * 11 6 5 45 45 H 1.09003 * 109.46315 * 305.85186 * 11 6 5 46 46 H 1.09001 * 109.47253 * 186.04439 * 12 3 2 47 47 H 1.09003 * 109.47508 * 306.05199 * 12 3 2 48 48 H 1.07994 * 119.87890 * 0.02562 * 14 13 12 49 49 H 1.07997 * 119.74980 * 180.02562 * 15 14 13 50 50 H 1.07997 * 119.87878 * 180.02562 * 16 15 14 51 51 H 1.07998 * 120.13331 * 179.97438 * 17 16 15 52 52 H 0.97000 * 120.00157 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8726 1.9954 1.3280 5 6 1.9205 3.5191 1.1972 6 7 1.6329 4.1318 2.5009 7 6 1.9005 5.5754 2.4744 8 6 1.4540 6.2027 3.7971 9 6 2.2155 5.5447 4.9511 10 6 1.9585 4.0354 4.9269 11 6 2.3902 3.4710 3.5715 12 6 3.4139 1.4505 -0.4579 13 6 3.4862 1.0447 -1.9074 14 6 3.8816 -0.2286 -2.2495 15 6 3.9484 -0.6047 -3.5820 16 6 3.6191 0.2948 -4.5845 17 6 3.2223 1.5732 -4.2659 18 6 3.1442 1.9640 -2.9161 19 6 2.7306 3.2728 -2.5763 20 1 2.1522 3.4407 -1.6799 21 6 3.0707 4.3505 -3.4018 22 7 3.7042 4.1385 -4.5266 23 14 2.6202 6.0918 -2.8974 24 1 3.2678 6.4148 -1.6006 25 1 3.0892 7.0448 -3.9352 26 1 1.1460 6.2001 -2.7550 27 1 -0.3633 0.4360 -0.9306 28 1 -0.3633 -1.0239 0.0878 29 1 -0.3633 0.5879 0.8429 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.6843 1.6604 1.9738 33 1 0.9174 1.6979 1.7609 34 1 1.1763 3.8449 0.4705 35 1 2.9123 3.8240 0.8633 36 1 1.3498 6.0318 1.6519 37 1 2.9681 5.7445 2.3344 38 1 1.6671 7.2716 3.7832 39 1 0.3837 6.0461 3.9312 40 1 3.2829 5.7343 4.8382 41 1 1.8693 5.9580 5.8985 42 1 2.5319 3.5558 5.7202 43 1 0.8961 3.8447 5.0787 44 1 3.4557 3.6498 3.4264 45 1 2.1953 2.3989 3.5458 46 1 3.7854 2.4692 -0.3469 47 1 4.0248 0.7738 0.1397 48 1 4.1399 -0.9375 -1.4769 49 1 4.2593 -1.6059 -3.8413 50 1 3.6743 -0.0090 -5.6194 51 1 2.9666 2.2724 -5.0482 52 1 3.9402 4.8855 -5.0985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235531067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:25 Heat of formation + Delta-G solvation = 14.492313 kcal Electronic energy + Delta-G solvation = -27757.677677 eV Core-core repulsion = 24334.938147 eV Total energy + Delta-G solvation = -3422.739530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.20324 -38.13203 -36.51782 -33.73349 -33.45671 -31.18704 -30.95684 -29.90845 -29.37328 -27.47229 -25.36119 -24.53093 -23.73300 -23.01426 -21.54583 -20.80710 -20.24678 -19.69430 -19.19582 -17.06748 -16.28346 -15.43799 -15.22961 -15.03177 -14.63966 -14.44134 -14.37665 -14.26949 -13.91543 -13.46202 -13.37218 -13.35801 -13.03173 -12.60974 -12.57551 -12.23291 -11.98443 -11.70033 -11.53610 -11.30649 -11.26087 -11.23564 -11.09824 -11.06335 -10.95326 -10.78200 -10.51811 -10.46881 -10.36542 -10.33173 -10.21205 -10.16942 -9.50039 -9.33602 -9.03442 -8.15652 -7.64010 -7.29577 -7.13898 -6.53847 -4.28823 2.83313 2.99959 3.11354 3.14121 3.27802 3.92233 4.02573 4.61362 4.76887 4.80082 4.82170 4.89178 5.17175 5.34408 5.37084 5.47492 5.49552 5.54898 5.58595 5.68001 5.73069 5.77739 5.81255 5.84576 5.88446 5.92914 5.94461 6.03237 6.04481 6.13384 6.13596 6.21048 6.23277 6.29015 6.34150 6.44772 6.49958 6.53590 6.61680 6.68126 6.89593 7.21447 7.22753 7.23798 7.34064 7.47957 7.69296 7.71112 7.79976 7.98769 8.14210 8.24115 8.40751 8.78187 9.04458 9.09209 10.37325 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.004747 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.306523 B = 5897.513571 C = 7720.867612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 N -0.522 5.522 4 C 0.057 3.943 5 C 0.060 3.940 6 N -0.537 5.537 7 C 0.055 3.945 8 C -0.115 4.115 9 C -0.121 4.121 10 C -0.116 4.116 11 C 0.048 3.952 12 C 0.124 3.876 13 C -0.181 4.181 14 C -0.097 4.097 15 C -0.234 4.234 16 C -0.114 4.114 17 C -0.152 4.152 18 C 0.126 3.874 19 C -0.447 4.447 20 H 0.088 0.912 21 C 0.069 3.931 22 N -0.815 5.815 23 Si 0.905 3.095 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.265 1.265 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.019 0.981 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.029 0.971 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.012 0.988 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.127 0.873 52 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 0.851 14.056 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 N -0.246 5.246 4 C -0.071 4.071 5 C -0.068 4.068 6 N -0.262 5.262 7 C -0.074 4.074 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.154 4.154 11 C -0.080 4.080 12 C -0.002 4.002 13 C -0.183 4.183 14 C -0.115 4.115 15 C -0.254 4.254 16 C -0.133 4.133 17 C -0.172 4.172 18 C 0.124 3.876 19 C -0.478 4.478 20 H 0.106 0.894 21 C -0.145 4.145 22 N -0.443 5.443 23 Si 0.731 3.269 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.189 1.189 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.030 0.970 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.103 0.897 51 H 0.145 0.855 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.979 1.204 13.629 14.249 hybrid contribution 1.393 0.447 0.413 1.521 sum -2.586 1.650 14.043 14.374 Atomic orbital electron populations 1.21743 0.95656 1.00198 1.02401 1.22042 0.95527 0.89425 1.00576 1.61889 1.21801 1.17385 1.23550 1.22162 1.00439 0.94146 0.90358 1.22134 1.00931 0.94024 0.89670 1.62015 1.56901 1.02800 1.04516 1.22069 0.98936 0.88298 0.98053 1.21576 1.00878 0.98723 0.94147 1.21578 1.00092 0.95838 0.98373 1.21587 1.02004 0.95442 0.96336 1.22185 0.95257 0.99184 0.91351 1.20690 0.86377 1.00124 0.92987 1.19586 1.10061 0.95247 0.93386 1.20375 1.01173 0.95093 0.94905 1.20358 1.13365 0.98463 0.93175 1.20750 1.00967 0.94921 0.96633 1.21652 1.03496 0.94212 0.97811 1.17412 0.87871 0.92012 0.90338 1.19647 1.29819 0.90717 1.07623 0.89351 1.25894 0.93432 1.01240 0.93969 1.69760 1.31501 1.33209 1.09805 0.86409 0.79892 0.81626 0.78986 1.19291 1.20696 1.18940 0.91828 0.93356 0.93201 0.89790 0.96304 0.95665 0.90637 0.89347 0.94346 0.90651 0.95009 0.91837 0.91154 0.92464 0.92137 0.91979 0.91215 0.95256 0.90372 0.90604 0.96998 0.89998 0.89831 0.89690 0.85514 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.07 37.16 0.37 -1.74 16 2 C 0.05 0.87 5.55 -3.82 -0.02 0.85 16 3 N -0.52 -9.43 4.06 -236.06 -0.96 -10.39 16 4 C 0.06 0.89 3.80 -3.82 -0.01 0.87 16 5 C 0.06 0.96 5.23 -3.82 -0.02 0.94 16 6 N -0.54 -7.42 4.81 -234.66 -1.13 -8.54 16 7 C 0.05 0.71 5.42 -3.83 -0.02 0.69 16 8 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 9 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 10 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 11 C 0.05 0.59 4.86 -3.83 -0.02 0.57 16 12 C 0.12 2.50 4.16 -4.97 -0.02 2.48 16 13 C -0.18 -4.18 4.72 -103.91 -0.49 -4.67 16 14 C -0.10 -2.13 8.22 -39.66 -0.33 -2.45 16 15 C -0.23 -5.24 10.05 -39.29 -0.39 -5.64 16 16 C -0.11 -2.70 10.02 -39.66 -0.40 -3.10 16 17 C -0.15 -3.95 8.67 -38.87 -0.34 -4.29 16 18 C 0.13 3.25 5.55 -106.82 -0.59 2.66 16 19 C -0.45 -11.40 7.98 -37.74 -0.30 -11.71 16 20 H 0.09 2.19 7.06 -52.49 -0.37 1.82 16 21 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 22 N -0.82 -21.13 10.60 55.55 0.59 -20.54 16 23 Si 0.91 19.03 29.56 -169.99 -5.03 14.00 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.70 6.64 -51.93 -0.35 0.35 16 30 H 0.08 1.56 5.76 -51.93 -0.30 1.26 16 31 H 0.02 0.29 8.00 -51.93 -0.42 -0.13 16 32 H 0.03 0.38 6.47 -51.93 -0.34 0.04 16 33 H 0.08 1.12 6.43 -51.93 -0.33 0.79 16 34 H 0.09 1.57 8.13 -51.93 -0.42 1.14 16 35 H 0.04 0.68 6.91 -51.93 -0.36 0.32 16 36 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.94 5.94 -51.93 -0.31 0.63 16 46 H 0.08 1.61 6.06 -51.93 -0.31 1.30 16 47 H 0.01 0.23 7.98 -51.93 -0.41 -0.19 16 48 H 0.08 1.62 8.03 -52.49 -0.42 1.19 16 49 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 50 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 51 H 0.13 3.44 6.13 -52.49 -0.32 3.12 16 52 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -26.06 391.79 -13.07 -39.13 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -9.29 Total: 7.39 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -3.16 Total: -26.94 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -1.50 Total: -39.48 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -26.06 -13.07 -39.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235531067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.623 kcal (2) G-P(sol) polarization free energy of solvation -26.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds