Wall clock time and date at job start Tue Mar 31 2020 11:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.47014 * 2 1 4 4 C 1.46896 * 110.99925 * 75.55358 * 3 2 1 5 5 C 1.53005 * 109.47071 * 199.46285 * 4 3 2 6 6 N 1.46894 * 109.47121 * 174.09599 * 5 4 3 7 7 C 1.46850 * 110.99797 * 169.99571 * 6 5 4 8 8 C 1.53045 * 109.52218 * 174.16236 * 7 6 5 9 9 C 1.53115 * 109.27817 * 59.18160 * 8 7 6 10 10 C 1.53123 * 109.16291 * 302.34630 * 9 8 7 11 11 C 1.46846 * 111.00027 * 45.79137 * 6 5 4 12 12 C 1.46899 * 110.99895 * 199.50340 * 3 2 1 13 13 C 1.50703 * 109.46934 * 66.04758 * 12 3 2 14 14 C 1.37641 * 120.12588 * 259.99712 * 13 12 3 15 15 C 1.38617 * 120.24780 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.49965 * 0.02673 * 15 14 13 17 17 C 1.37594 * 120.25085 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.13037 * 79.72700 * 13 12 3 19 19 C 1.41402 * 120.24107 * 359.97438 * 18 13 12 20 20 H 1.08001 * 119.99875 * 325.30564 * 19 18 13 21 21 C 1.39940 * 119.99792 * 145.31189 * 19 18 13 22 22 N 1.30823 * 120.00363 * 3.94334 * 21 19 18 23 23 Si 1.86807 * 119.99939 * 183.95030 * 21 19 18 24 24 H 1.48502 * 109.47211 * 59.99474 * 23 21 19 25 25 H 1.48499 * 109.47367 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46652 * 299.99941 * 23 21 19 27 27 H 1.08997 * 109.47235 * 64.89659 * 1 2 3 28 28 H 1.09001 * 109.46931 * 184.90254 * 1 2 3 29 29 H 1.09003 * 109.47052 * 304.89513 * 1 2 3 30 30 H 1.09000 * 109.46950 * 240.00069 * 2 1 3 31 31 H 1.09001 * 109.47428 * 120.00070 * 2 1 3 32 32 H 1.09003 * 109.47268 * 79.46325 * 4 3 2 33 33 H 1.09001 * 109.47300 * 319.45764 * 4 3 2 34 34 H 1.08999 * 109.46753 * 54.09718 * 5 4 3 35 35 H 1.09003 * 109.46915 * 294.09861 * 5 4 3 36 36 H 1.08999 * 109.46118 * 54.14865 * 7 6 5 37 37 H 1.08997 * 109.46686 * 294.17956 * 7 6 5 38 38 H 1.08997 * 109.50360 * 179.12394 * 8 7 6 39 39 H 1.09004 * 109.50244 * 299.24332 * 8 7 6 40 40 H 1.08998 * 109.52322 * 62.25257 * 9 8 7 41 41 H 1.09003 * 109.52228 * 182.44335 * 9 8 7 42 42 H 1.09000 * 109.50594 * 177.59677 * 10 9 8 43 43 H 1.09003 * 109.49942 * 297.71703 * 10 9 8 44 44 H 1.09007 * 109.46635 * 65.81935 * 11 6 5 45 45 H 1.09003 * 109.46315 * 305.85186 * 11 6 5 46 46 H 1.09001 * 109.47253 * 186.04439 * 12 3 2 47 47 H 1.09003 * 109.47508 * 306.05199 * 12 3 2 48 48 H 1.07994 * 119.87890 * 0.02562 * 14 13 12 49 49 H 1.07997 * 119.74980 * 180.02562 * 15 14 13 50 50 H 1.07997 * 119.87878 * 180.02562 * 16 15 14 51 51 H 1.07998 * 120.13331 * 179.97438 * 17 16 15 52 52 H 0.97000 * 120.00157 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8726 1.9954 1.3280 5 6 1.9205 3.5191 1.1972 6 7 1.6329 4.1318 2.5009 7 6 1.9005 5.5754 2.4744 8 6 1.4540 6.2027 3.7971 9 6 2.2155 5.5447 4.9511 10 6 1.9585 4.0354 4.9269 11 6 2.3902 3.4710 3.5715 12 6 3.4139 1.4505 -0.4579 13 6 3.4862 1.0447 -1.9074 14 6 3.8816 -0.2286 -2.2495 15 6 3.9484 -0.6047 -3.5820 16 6 3.6191 0.2948 -4.5845 17 6 3.2223 1.5732 -4.2659 18 6 3.1442 1.9640 -2.9161 19 6 2.7306 3.2728 -2.5763 20 1 2.1522 3.4407 -1.6799 21 6 3.0707 4.3505 -3.4018 22 7 3.7042 4.1385 -4.5266 23 14 2.6202 6.0918 -2.8974 24 1 3.2678 6.4148 -1.6006 25 1 3.0892 7.0448 -3.9352 26 1 1.1460 6.2001 -2.7550 27 1 -0.3633 0.4360 -0.9306 28 1 -0.3633 -1.0239 0.0878 29 1 -0.3633 0.5879 0.8429 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.6843 1.6604 1.9738 33 1 0.9174 1.6979 1.7609 34 1 1.1763 3.8449 0.4705 35 1 2.9123 3.8240 0.8633 36 1 1.3498 6.0318 1.6519 37 1 2.9681 5.7445 2.3344 38 1 1.6671 7.2716 3.7832 39 1 0.3837 6.0461 3.9312 40 1 3.2829 5.7343 4.8382 41 1 1.8693 5.9580 5.8985 42 1 2.5319 3.5558 5.7202 43 1 0.8961 3.8447 5.0787 44 1 3.4557 3.6498 3.4264 45 1 2.1953 2.3989 3.5458 46 1 3.7854 2.4692 -0.3469 47 1 4.0248 0.7738 0.1397 48 1 4.1399 -0.9375 -1.4769 49 1 4.2593 -1.6059 -3.8413 50 1 3.6743 -0.0090 -5.6194 51 1 2.9666 2.2724 -5.0482 52 1 3.9402 4.8855 -5.0985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235531067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:25 Heat of formation + Delta-G solvation = 2.218834 kcal Electronic energy + Delta-G solvation = -27758.209895 eV Core-core repulsion = 24334.938147 eV Total energy + Delta-G solvation = -3423.271748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39304 -39.65658 -38.01850 -35.39057 -34.72943 -32.78022 -31.90937 -31.24195 -31.21948 -28.86385 -27.11292 -25.98236 -24.98609 -23.96750 -22.89665 -22.52515 -21.72927 -20.91017 -20.50529 -18.95339 -17.49303 -17.04195 -16.62634 -16.47729 -15.95889 -15.80125 -15.65105 -15.45038 -15.23653 -15.04653 -14.78744 -14.37706 -14.33403 -14.19326 -13.76640 -13.52941 -13.36985 -13.23776 -13.05325 -12.81917 -12.78444 -12.59732 -12.54384 -12.33515 -12.25801 -12.11950 -12.11073 -11.82456 -11.66000 -11.52286 -11.32625 -11.27226 -11.21641 -11.09854 -10.89260 -9.31542 -9.17892 -9.04817 -8.95390 -8.41813 -6.23910 1.02238 1.16441 1.36398 1.45515 1.52688 2.24519 2.74653 2.89606 3.34436 3.83819 3.90478 3.93275 3.99285 4.11068 4.18411 4.21713 4.32728 4.34471 4.42540 4.46855 4.52605 4.55155 4.61245 4.65216 4.66429 4.72595 4.76743 4.81627 4.86222 4.92457 4.93402 5.02884 5.04301 5.08238 5.14391 5.17451 5.22671 5.26958 5.29353 5.32067 5.44521 5.46928 5.48623 5.61339 5.85361 6.04974 6.08063 6.17175 6.24546 6.29061 6.38460 6.44550 6.53464 6.86222 7.12955 7.18786 8.50568 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.004747 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.306523 B = 5897.513571 C = 7720.867612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.053 3.947 3 N -0.538 5.538 4 C 0.067 3.933 5 C 0.070 3.930 6 N -0.537 5.537 7 C 0.050 3.950 8 C -0.110 4.110 9 C -0.120 4.120 10 C -0.111 4.111 11 C 0.046 3.954 12 C 0.135 3.865 13 C -0.181 4.181 14 C -0.099 4.099 15 C -0.231 4.231 16 C -0.122 4.122 17 C -0.183 4.183 18 C 0.096 3.904 19 C -0.466 4.466 20 H 0.086 0.914 21 C 0.028 3.972 22 N -0.847 5.847 23 Si 0.966 3.034 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.262 1.262 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.014 0.986 36 H 0.064 0.936 37 H 0.021 0.979 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.020 0.980 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.026 0.974 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.103 0.897 51 H 0.104 0.896 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 0.057 16.757 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 N -0.263 5.263 4 C -0.060 4.060 5 C -0.059 4.059 6 N -0.262 5.262 7 C -0.078 4.078 8 C -0.148 4.148 9 C -0.158 4.158 10 C -0.149 4.149 11 C -0.082 4.082 12 C 0.008 3.992 13 C -0.183 4.183 14 C -0.117 4.117 15 C -0.250 4.250 16 C -0.141 4.141 17 C -0.203 4.203 18 C 0.094 3.906 19 C -0.497 4.497 20 H 0.104 0.896 21 C -0.183 4.183 22 N -0.476 5.476 23 Si 0.789 3.211 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.186 1.186 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.038 0.962 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.044 0.956 48 H 0.129 0.871 49 H 0.132 0.868 50 H 0.121 0.879 51 H 0.122 0.878 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.308 0.398 16.340 16.903 hybrid contribution 1.512 0.563 -0.417 1.666 sum -2.796 0.961 15.923 16.195 Atomic orbital electron populations 1.21682 0.94340 1.01697 1.01533 1.22059 0.96566 0.88394 1.00485 1.61786 1.20443 1.18760 1.25318 1.22105 1.01389 0.93348 0.89199 1.21928 0.98694 0.94719 0.90530 1.62055 1.57141 1.03272 1.03735 1.22153 0.98200 0.88010 0.99479 1.21559 1.00968 0.99382 0.92878 1.21591 0.99850 0.95537 0.98784 1.21580 1.02312 0.95764 0.95247 1.22282 0.94571 0.99417 0.91915 1.20487 0.87928 0.99183 0.91586 1.19925 1.08614 0.95274 0.94480 1.20705 1.00219 0.95124 0.95700 1.20742 1.11833 0.99451 0.93008 1.20990 1.00597 0.94331 0.98172 1.21605 1.05826 0.95127 0.97695 1.17734 0.88962 0.92916 0.91003 1.19770 1.30636 0.91390 1.07908 0.89636 1.26615 0.93200 1.04656 0.93817 1.69862 1.32765 1.34201 1.10781 0.85483 0.79623 0.77302 0.78736 1.18880 1.19972 1.18615 0.94160 0.90967 0.92250 0.91814 0.94229 0.94522 0.89382 0.91716 0.96740 0.91759 0.96072 0.90522 0.91049 0.92713 0.90144 0.90170 0.91065 0.96154 0.90026 0.92526 0.95556 0.87072 0.86797 0.87929 0.87767 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 10.07 71.98 0.72 -3.04 16 2 C 0.05 1.66 5.55 86.30 0.48 2.14 16 3 N -0.54 -19.17 4.06 -900.76 -3.66 -22.83 16 4 C 0.07 2.02 3.80 86.31 0.33 2.35 16 5 C 0.07 2.25 5.23 86.31 0.45 2.70 16 6 N -0.54 -14.51 4.81 -896.33 -4.31 -18.82 16 7 C 0.05 1.28 5.42 86.33 0.47 1.74 16 8 C -0.11 -2.12 6.09 30.65 0.19 -1.93 16 9 C -0.12 -2.01 6.00 30.67 0.18 -1.83 16 10 C -0.11 -1.95 6.09 30.65 0.19 -1.76 16 11 C 0.05 1.04 4.86 86.33 0.42 1.46 16 12 C 0.13 5.40 4.16 85.56 0.36 5.75 16 13 C -0.18 -8.39 4.72 -19.40 -0.09 -8.48 16 14 C -0.10 -4.20 8.22 22.22 0.18 -4.02 16 15 C -0.23 -9.98 10.05 22.46 0.23 -9.75 16 16 C -0.12 -5.81 10.02 22.22 0.22 -5.59 16 17 C -0.18 -9.84 8.67 22.73 0.20 -9.64 16 18 C 0.10 5.12 5.55 -21.29 -0.12 5.00 16 19 C -0.47 -24.78 7.98 23.46 0.19 -24.59 16 20 H 0.09 4.45 7.06 -2.91 -0.02 4.43 16 21 C 0.03 1.45 5.42 85.26 0.46 1.91 16 22 N -0.85 -45.84 10.60 21.82 0.23 -45.61 16 23 Si 0.97 40.35 29.56 68.60 2.03 42.37 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.53 6.64 -2.39 -0.02 1.51 16 30 H 0.06 2.27 5.76 -2.39 -0.01 2.26 16 31 H 0.04 1.09 8.00 -2.39 -0.02 1.07 16 32 H 0.04 1.03 6.47 -2.39 -0.02 1.01 16 33 H 0.09 2.43 6.43 -2.39 -0.02 2.42 16 34 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 35 H 0.01 0.53 6.91 -2.39 -0.02 0.51 16 36 H 0.06 1.76 8.12 -2.39 -0.02 1.74 16 37 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.08 1.78 5.94 -2.39 -0.01 1.77 16 46 H 0.06 2.47 6.06 -2.39 -0.01 2.46 16 47 H 0.03 0.96 7.98 -2.39 -0.02 0.94 16 48 H 0.11 4.05 8.03 -2.91 -0.02 4.03 16 49 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 50 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 51 H 0.10 5.99 6.13 -2.91 -0.02 5.97 16 52 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 Total: -1.00 -57.98 391.79 0.21 -57.77 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.87 Total: 34.70 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 5.05 Total: -47.59 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -7.74 Total: -87.27 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -57.98 0.21 -57.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235531067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.993 kcal (2) G-P(sol) polarization free energy of solvation -57.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds