Wall clock time and date at job start Tue Mar 31 2020 11:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46659 * 2 1 4 4 H 1.08992 * 109.46308 * 304.97961 * 3 2 1 5 5 C 1.53041 * 109.45818 * 184.99770 * 3 2 1 6 6 C 1.53124 * 109.27372 * 180.81546 * 5 3 2 7 7 H 1.09003 * 109.52225 * 177.56268 * 6 5 3 8 8 N 1.46500 * 109.52519 * 297.74927 * 6 5 3 9 9 C 1.36929 * 120.00399 * 295.23247 * 8 6 5 10 10 H 1.07993 * 120.00545 * 127.16375 * 9 8 6 11 11 C 1.38817 * 119.99658 * 307.16910 * 9 8 6 12 12 N 1.31620 * 119.99975 * 328.09687 * 11 9 8 13 13 Si 1.86803 * 120.00042 * 148.10434 * 11 9 8 14 14 H 1.48498 * 109.47298 * 89.99727 * 13 11 9 15 15 H 1.48504 * 109.46701 * 209.99690 * 13 11 9 16 16 H 1.48496 * 109.47099 * 329.99763 * 13 11 9 17 17 C 1.46502 * 119.99768 * 115.22740 * 8 6 5 18 18 C 1.50700 * 109.47172 * 130.72173 * 17 8 6 19 19 C 1.38234 * 119.99560 * 268.71057 * 18 17 8 20 20 C 1.38242 * 119.99646 * 179.76193 * 19 18 17 21 21 C 1.38236 * 119.99878 * 0.49200 * 20 19 18 22 22 C 1.38236 * 119.99911 * 359.78370 * 21 20 19 23 23 C 1.38232 * 120.00248 * 359.96250 * 22 21 20 24 24 C 1.53118 * 109.15938 * 57.65788 * 6 5 3 25 25 C 1.53035 * 109.27852 * 302.34012 * 24 6 5 26 26 H 1.08997 * 109.46481 * 299.17598 * 25 24 6 27 27 C 1.52998 * 109.46322 * 179.19442 * 25 24 6 28 28 C 1.53000 * 109.47294 * 174.98063 * 27 25 24 29 29 N 1.46848 * 109.51208 * 59.19011 * 25 24 6 30 30 H 1.08997 * 109.47513 * 60.00125 * 1 2 3 31 31 H 1.09006 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47446 * 299.99506 * 1 2 3 33 33 H 1.08996 * 109.47446 * 240.00494 * 2 1 3 34 34 H 1.08997 * 109.47513 * 119.99875 * 2 1 3 35 35 H 1.08998 * 109.50209 * 60.87929 * 5 3 2 36 36 H 1.08998 * 109.50673 * 300.75763 * 5 3 2 37 37 H 0.96998 * 120.00377 * 185.02699 * 12 11 9 38 38 H 1.09003 * 109.47029 * 250.72020 * 17 8 6 39 39 H 1.09006 * 109.47157 * 10.71864 * 17 8 6 40 40 H 1.08000 * 120.00344 * 0.02562 * 19 18 17 41 41 H 1.07999 * 120.00148 * 180.25778 * 20 19 18 42 42 H 1.08000 * 120.00079 * 179.76315 * 21 20 19 43 43 H 1.08002 * 120.00153 * 179.97438 * 22 21 20 44 44 H 1.07997 * 120.00547 * 179.97438 * 23 22 21 45 45 H 1.09008 * 109.50141 * 182.40133 * 24 6 5 46 46 H 1.08999 * 109.53648 * 62.30323 * 24 6 5 47 47 H 1.09004 * 109.46938 * 54.98348 * 27 25 24 48 48 H 1.09002 * 109.47131 * 294.98572 * 27 25 24 49 49 H 1.09004 * 109.46896 * 60.00258 * 28 27 25 50 50 H 1.08994 * 109.47156 * 300.00143 * 28 27 25 51 51 H 1.08999 * 109.47337 * 180.02562 * 28 27 25 52 52 H 1.00896 * 111.00716 * 62.34483 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9813 -0.8420 5 6 3.5651 1.4442 -0.1257 6 6 4.0725 2.8888 -0.1048 7 1 5.1615 2.8931 -0.1505 8 7 3.5301 3.6150 -1.2558 9 6 3.8838 3.2467 -2.5263 10 1 3.1199 3.0423 -3.2618 11 6 5.2244 3.1360 -2.8690 12 7 6.1162 3.9185 -2.2989 13 14 5.7629 1.8768 -4.1393 14 1 5.7242 2.4898 -5.4913 15 1 7.1467 1.4301 -3.8378 16 1 4.8460 0.7094 -4.0987 17 6 2.6091 4.7351 -1.0474 18 6 3.0681 5.9201 -1.8575 19 6 3.9214 6.8519 -1.2967 20 6 4.3463 7.9363 -2.0414 21 6 3.9098 8.0943 -3.3434 22 6 3.0519 7.1655 -3.9023 23 6 2.6312 6.0783 -3.1594 24 6 3.6120 3.5644 1.1898 25 6 2.0855 3.5013 1.2774 26 1 1.6508 4.0303 0.4293 27 6 1.6220 4.1577 2.5794 28 6 0.0931 4.2071 2.6096 29 7 1.6504 2.0990 1.2546 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8534 0.9708 -1.0643 36 1 3.9996 0.8937 0.7087 37 1 7.0411 3.8924 -2.5900 38 1 1.6070 4.4452 -1.3634 39 1 2.5941 5.0013 0.0095 40 1 4.2595 6.7304 -0.2782 41 1 5.0163 8.6621 -1.6047 42 1 4.2387 8.9435 -3.9240 43 1 2.7105 7.2891 -4.9194 44 1 1.9606 5.3529 -3.5958 45 1 3.9339 4.6059 1.1912 46 1 4.0473 3.0479 2.0453 47 1 2.0194 5.1710 2.6370 48 1 1.9836 3.5768 3.4279 49 1 -0.3044 3.1937 2.5520 50 1 -0.2685 4.7880 1.7612 51 1 -0.2371 4.6751 3.5370 52 1 2.0089 1.5960 2.0524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246831072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:24 Heat of formation + Delta-G solvation = 49.221192 kcal Electronic energy + Delta-G solvation = -28960.530618 eV Core-core repulsion = 25539.297046 eV Total energy + Delta-G solvation = -3421.233572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.60181 -38.11822 -35.05985 -34.51474 -31.92707 -31.72983 -30.24181 -30.00438 -28.74546 -28.57961 -25.64722 -24.35514 -22.96178 -22.57717 -21.66096 -21.13920 -20.06550 -19.65700 -19.17742 -16.57931 -15.83889 -15.51395 -15.01148 -14.68763 -14.31344 -14.23980 -14.11991 -13.92086 -13.59633 -13.37131 -13.13291 -12.84654 -12.60324 -12.53704 -12.36512 -12.13747 -11.94369 -11.53730 -11.49023 -11.40306 -11.00855 -10.93297 -10.87501 -10.77115 -10.72813 -10.64629 -10.46546 -10.32165 -10.20106 -10.16644 -10.06819 -9.95479 -9.60899 -9.21044 -8.34912 -7.99337 -7.75257 -7.68169 -6.35275 -5.74165 -3.45314 2.31494 2.33306 3.31514 3.41299 3.45560 4.44662 4.68808 4.71028 5.12023 5.21839 5.31303 5.42266 5.54398 5.55237 5.56468 5.68326 5.68805 5.70369 5.83855 5.87427 5.89689 5.95269 6.02259 6.09427 6.12629 6.17362 6.23310 6.27005 6.29150 6.33674 6.35757 6.42978 6.46921 6.50179 6.53441 6.57976 6.65399 6.67466 6.70910 6.81312 6.93936 6.95210 6.99747 7.09358 7.32240 7.33027 7.38421 7.68405 7.71375 7.90343 7.94455 7.97003 8.64838 9.22074 9.76392 10.51112 11.12717 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.006433 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.340793 B = 4351.645829 C = 5984.319212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.099 3.901 4 H 0.089 0.911 5 C -0.153 4.153 6 C 0.190 3.810 7 H 0.051 0.949 8 N -0.563 5.563 9 C -0.279 4.279 10 H 0.049 0.951 11 C 0.050 3.950 12 N -0.850 5.850 13 Si 0.871 3.129 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.275 1.275 17 C 0.158 3.842 18 C -0.045 4.045 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.130 4.130 23 C -0.093 4.093 24 C -0.156 4.156 25 C 0.063 3.937 26 H 0.113 0.887 27 C -0.116 4.116 28 C -0.141 4.141 29 N -0.671 5.671 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.253 0.747 38 H 0.020 0.980 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.052 0.948 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.039 0.961 52 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 0.597 6.921 10.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.011 4.011 4 H 0.107 0.893 5 C -0.194 4.194 6 C 0.083 3.917 7 H 0.068 0.932 8 N -0.285 5.285 9 C -0.409 4.409 10 H 0.067 0.933 11 C -0.156 4.156 12 N -0.487 5.487 13 Si 0.699 3.301 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.200 1.200 17 C 0.034 3.966 18 C -0.047 4.047 19 C -0.114 4.114 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.148 4.148 23 C -0.112 4.112 24 C -0.195 4.195 25 C -0.046 4.046 26 H 0.131 0.869 27 C -0.154 4.154 28 C -0.198 4.198 29 N -0.299 5.299 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.359 0.725 6.773 10.783 hybrid contribution 2.013 -0.788 -0.795 2.304 sum -6.346 -0.063 5.977 8.718 Atomic orbital electron populations 1.21638 0.95931 0.99874 1.02256 1.21546 0.96014 0.96716 1.00949 1.21444 0.93712 0.93337 0.92611 0.89250 1.22579 0.96432 0.99541 1.00867 1.20248 0.97305 0.89028 0.85078 0.93156 1.43649 1.53287 1.29744 1.01857 1.18362 0.89260 1.44145 0.89123 0.93341 1.25408 0.97943 0.96367 0.95903 1.70175 1.02796 1.33400 1.42287 0.86856 0.77765 0.83443 0.82047 1.21154 1.21649 1.19963 1.20622 0.93257 0.86413 0.96286 1.20377 0.95098 0.94344 0.94882 1.20742 0.97144 0.94150 0.99326 1.20864 1.00328 0.98558 0.94814 1.20800 0.99889 0.99568 0.95622 1.20919 0.99321 0.95736 0.98868 1.20840 1.00093 0.96119 0.94169 1.22487 0.97193 1.01324 0.98497 1.22417 0.93020 0.90188 0.99019 0.86923 1.21563 0.96420 0.99969 0.97411 1.21639 0.95748 1.02256 1.00165 1.60862 1.62708 1.02212 1.04149 0.93271 0.94357 0.91880 0.92199 0.93102 0.91247 0.94408 0.93679 0.96219 0.91390 0.87769 0.87759 0.87823 0.87699 0.87253 0.91916 0.92963 0.92302 0.92886 0.91708 0.93191 0.94175 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.80 37.16 0.36 -1.44 16 2 C -0.11 -1.62 5.56 -26.73 -0.15 -1.77 16 3 C 0.10 1.60 2.28 -67.71 -0.15 1.44 16 4 H 0.09 1.71 7.69 -51.93 -0.40 1.31 16 5 C -0.15 -2.85 4.80 -26.65 -0.13 -2.98 16 6 C 0.19 3.90 2.96 -67.81 -0.20 3.70 16 7 H 0.05 1.25 7.26 -51.93 -0.38 0.87 16 8 N -0.56 -12.38 2.02 -166.88 -0.34 -12.72 16 9 C -0.28 -7.03 7.14 -15.06 -0.11 -7.14 16 10 H 0.05 1.29 8.00 -52.49 -0.42 0.87 16 11 C 0.05 1.31 4.89 -17.43 -0.09 1.23 16 12 N -0.85 -23.50 13.11 55.49 0.73 -22.78 16 13 Si 0.87 20.87 29.66 -169.99 -5.04 15.83 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 C 0.16 3.16 4.05 -5.19 -0.02 3.13 16 18 C -0.05 -0.94 4.80 -104.62 -0.50 -1.44 16 19 C -0.09 -1.91 9.70 -39.58 -0.38 -2.30 16 20 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 21 C -0.14 -2.54 10.05 -39.58 -0.40 -2.94 16 22 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 23 C -0.09 -1.89 9.07 -39.58 -0.36 -2.25 16 24 C -0.16 -2.65 4.35 -26.65 -0.12 -2.76 16 25 C 0.06 0.93 1.61 -67.72 -0.11 0.83 16 26 H 0.11 1.89 3.95 -51.93 -0.20 1.68 16 27 C -0.12 -1.47 5.56 -26.73 -0.15 -1.61 16 28 C -0.14 -1.66 9.80 37.16 0.36 -1.30 16 29 N -0.67 -9.61 5.04 -99.77 -0.50 -10.11 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.47 7.71 -51.93 -0.40 1.07 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 38 H 0.02 0.40 7.67 -51.93 -0.40 0.01 16 39 H 0.07 1.25 3.70 -51.93 -0.19 1.06 16 40 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 45 H 0.06 1.13 7.25 -51.92 -0.38 0.75 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.32 4.39 8.73 -39.29 -0.34 4.05 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -26.40 395.13 -11.52 -37.93 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -9.39 Total: 9.13 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -2.93 Total: -23.23 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.11 Total: -45.61 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.04 Total: 15.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -26.40 -11.52 -37.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246831072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.147 kcal (2) G-P(sol) polarization free energy of solvation -26.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds