Wall clock time and date at job start Tue Mar 31 2020 11:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46659 * 2 1 4 4 H 1.08992 * 109.46308 * 304.97961 * 3 2 1 5 5 C 1.53041 * 109.45818 * 184.99770 * 3 2 1 6 6 C 1.53124 * 109.27372 * 180.81546 * 5 3 2 7 7 H 1.09003 * 109.52225 * 177.56268 * 6 5 3 8 8 N 1.46500 * 109.52519 * 297.74927 * 6 5 3 9 9 C 1.36929 * 120.00399 * 295.23247 * 8 6 5 10 10 H 1.07993 * 120.00545 * 127.16375 * 9 8 6 11 11 C 1.38817 * 119.99658 * 307.16910 * 9 8 6 12 12 N 1.31620 * 119.99975 * 328.09687 * 11 9 8 13 13 Si 1.86803 * 120.00042 * 148.10434 * 11 9 8 14 14 H 1.48498 * 109.47298 * 89.99727 * 13 11 9 15 15 H 1.48504 * 109.46701 * 209.99690 * 13 11 9 16 16 H 1.48496 * 109.47099 * 329.99763 * 13 11 9 17 17 C 1.46502 * 119.99768 * 115.22740 * 8 6 5 18 18 C 1.50700 * 109.47172 * 130.72173 * 17 8 6 19 19 C 1.38234 * 119.99560 * 268.71057 * 18 17 8 20 20 C 1.38242 * 119.99646 * 179.76193 * 19 18 17 21 21 C 1.38236 * 119.99878 * 0.49200 * 20 19 18 22 22 C 1.38236 * 119.99911 * 359.78370 * 21 20 19 23 23 C 1.38232 * 120.00248 * 359.96250 * 22 21 20 24 24 C 1.53118 * 109.15938 * 57.65788 * 6 5 3 25 25 C 1.53035 * 109.27852 * 302.34012 * 24 6 5 26 26 H 1.08997 * 109.46481 * 299.17598 * 25 24 6 27 27 C 1.52998 * 109.46322 * 179.19442 * 25 24 6 28 28 C 1.53000 * 109.47294 * 174.98063 * 27 25 24 29 29 N 1.46848 * 109.51208 * 59.19011 * 25 24 6 30 30 H 1.08997 * 109.47513 * 60.00125 * 1 2 3 31 31 H 1.09006 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47446 * 299.99506 * 1 2 3 33 33 H 1.08996 * 109.47446 * 240.00494 * 2 1 3 34 34 H 1.08997 * 109.47513 * 119.99875 * 2 1 3 35 35 H 1.08998 * 109.50209 * 60.87929 * 5 3 2 36 36 H 1.08998 * 109.50673 * 300.75763 * 5 3 2 37 37 H 0.96998 * 120.00377 * 185.02699 * 12 11 9 38 38 H 1.09003 * 109.47029 * 250.72020 * 17 8 6 39 39 H 1.09006 * 109.47157 * 10.71864 * 17 8 6 40 40 H 1.08000 * 120.00344 * 0.02562 * 19 18 17 41 41 H 1.07999 * 120.00148 * 180.25778 * 20 19 18 42 42 H 1.08000 * 120.00079 * 179.76315 * 21 20 19 43 43 H 1.08002 * 120.00153 * 179.97438 * 22 21 20 44 44 H 1.07997 * 120.00547 * 179.97438 * 23 22 21 45 45 H 1.09008 * 109.50141 * 182.40133 * 24 6 5 46 46 H 1.08999 * 109.53648 * 62.30323 * 24 6 5 47 47 H 1.09004 * 109.46938 * 54.98348 * 27 25 24 48 48 H 1.09002 * 109.47131 * 294.98572 * 27 25 24 49 49 H 1.09004 * 109.46896 * 60.00258 * 28 27 25 50 50 H 1.08994 * 109.47156 * 300.00143 * 28 27 25 51 51 H 1.08999 * 109.47337 * 180.02562 * 28 27 25 52 52 H 1.00896 * 111.00716 * 62.34483 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9813 -0.8420 5 6 3.5651 1.4442 -0.1257 6 6 4.0725 2.8888 -0.1048 7 1 5.1615 2.8931 -0.1505 8 7 3.5301 3.6150 -1.2558 9 6 3.8838 3.2467 -2.5263 10 1 3.1199 3.0423 -3.2618 11 6 5.2244 3.1360 -2.8690 12 7 6.1162 3.9185 -2.2989 13 14 5.7629 1.8768 -4.1393 14 1 5.7242 2.4898 -5.4913 15 1 7.1467 1.4301 -3.8378 16 1 4.8460 0.7094 -4.0987 17 6 2.6091 4.7351 -1.0474 18 6 3.0681 5.9201 -1.8575 19 6 3.9214 6.8519 -1.2967 20 6 4.3463 7.9363 -2.0414 21 6 3.9098 8.0943 -3.3434 22 6 3.0519 7.1655 -3.9023 23 6 2.6312 6.0783 -3.1594 24 6 3.6120 3.5644 1.1898 25 6 2.0855 3.5013 1.2774 26 1 1.6508 4.0303 0.4293 27 6 1.6220 4.1577 2.5794 28 6 0.0931 4.2071 2.6096 29 7 1.6504 2.0990 1.2546 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8534 0.9708 -1.0643 36 1 3.9996 0.8937 0.7087 37 1 7.0411 3.8924 -2.5900 38 1 1.6070 4.4452 -1.3634 39 1 2.5941 5.0013 0.0095 40 1 4.2595 6.7304 -0.2782 41 1 5.0163 8.6621 -1.6047 42 1 4.2387 8.9435 -3.9240 43 1 2.7105 7.2891 -4.9194 44 1 1.9606 5.3529 -3.5958 45 1 3.9339 4.6059 1.1912 46 1 4.0473 3.0479 2.0453 47 1 2.0194 5.1710 2.6370 48 1 1.9836 3.5768 3.4279 49 1 -0.3044 3.1937 2.5520 50 1 -0.2685 4.7880 1.7612 51 1 -0.2371 4.6751 3.5370 52 1 2.0089 1.5960 2.0524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246831072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:23 Heat of formation + Delta-G solvation = 38.138368 kcal Electronic energy + Delta-G solvation = -28961.011205 eV Core-core repulsion = 25539.297046 eV Total energy + Delta-G solvation = -3421.714160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06413 -39.60043 -36.65333 -35.74214 -33.74354 -33.18286 -31.55090 -31.51887 -30.26453 -29.97344 -27.32149 -25.81008 -24.24193 -24.13272 -23.18661 -22.49484 -21.34156 -21.05596 -20.82853 -18.36561 -17.38666 -16.90068 -16.66552 -16.24531 -15.89436 -15.80611 -15.64554 -15.23855 -15.03309 -14.71262 -14.41463 -14.26093 -14.04890 -14.00409 -13.70732 -13.55267 -13.35656 -13.15673 -13.04041 -12.78520 -12.64173 -12.47040 -12.34650 -12.20552 -12.15570 -12.07951 -11.99154 -11.67530 -11.65021 -11.56897 -11.54219 -11.38564 -11.03707 -10.66989 -10.38449 -9.52252 -9.29384 -9.02112 -8.31332 -7.67453 -5.47250 0.79092 0.79929 1.34993 1.41784 1.49109 2.47575 3.12813 3.18648 3.44761 3.77437 4.01612 4.08049 4.18673 4.22000 4.27484 4.33212 4.37548 4.43797 4.45784 4.48004 4.58130 4.62714 4.72336 4.72796 4.78150 4.86340 4.89312 4.92394 4.98892 5.06092 5.08538 5.15881 5.18882 5.23183 5.28168 5.28696 5.30446 5.41692 5.43096 5.48284 5.50933 5.59321 5.61440 5.64823 5.66753 5.80854 5.81753 5.84040 6.12560 6.36116 6.43105 6.60234 6.78071 7.30930 7.88029 8.56798 9.09024 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.006433 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.340793 B = 4351.645829 C = 5984.319212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C 0.111 3.889 4 H 0.058 0.942 5 C -0.146 4.146 6 C 0.186 3.814 7 H 0.004 0.996 8 N -0.567 5.567 9 C -0.266 4.266 10 H 0.031 0.969 11 C 0.011 3.989 12 N -0.879 5.879 13 Si 0.916 3.084 14 H -0.287 1.287 15 H -0.295 1.295 16 H -0.272 1.272 17 C 0.166 3.834 18 C -0.067 4.067 19 C -0.113 4.113 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.114 4.114 24 C -0.145 4.145 25 C 0.071 3.929 26 H 0.094 0.906 27 C -0.109 4.109 28 C -0.136 4.136 29 N -0.656 5.656 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.247 0.753 38 H 0.016 0.984 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.104 0.896 45 H 0.051 0.949 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.041 0.959 51 H 0.057 0.943 52 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 0.795 8.193 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C 0.001 3.999 4 H 0.076 0.924 5 C -0.187 4.187 6 C 0.080 3.920 7 H 0.022 0.978 8 N -0.290 5.290 9 C -0.396 4.396 10 H 0.048 0.952 11 C -0.192 4.192 12 N -0.518 5.518 13 Si 0.745 3.255 14 H -0.214 1.214 15 H -0.221 1.221 16 H -0.197 1.197 17 C 0.042 3.958 18 C -0.068 4.068 19 C -0.131 4.131 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.133 4.133 24 C -0.185 4.185 25 C -0.039 4.039 26 H 0.112 0.888 27 C -0.147 4.147 28 C -0.193 4.193 29 N -0.285 5.285 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.034 0.966 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.122 0.878 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.076 0.924 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.514 0.912 8.050 12.496 hybrid contribution 2.332 -0.809 -1.197 2.743 sum -7.183 0.103 6.853 9.928 Atomic orbital electron populations 1.21566 0.94598 1.00940 1.01857 1.21493 0.97080 0.94924 1.01284 1.21214 0.91502 0.94639 0.92524 0.92384 1.22487 0.98446 0.97951 0.99784 1.20206 0.94738 0.90629 0.86397 0.97829 1.43707 1.53155 1.30778 1.01330 1.18290 0.88681 1.42673 0.89986 0.95150 1.25825 0.98176 0.97617 0.97568 1.70256 1.02531 1.34993 1.44004 0.86134 0.77041 0.81990 0.80370 1.21359 1.22130 1.19727 1.20595 0.92220 0.85675 0.97306 1.20517 0.95971 0.94935 0.95404 1.20882 0.97603 0.94929 0.99716 1.21221 1.00233 0.98418 0.95185 1.21208 0.98951 1.00188 0.95596 1.21258 0.99024 0.95119 0.99906 1.20973 1.00835 0.97074 0.94446 1.22401 0.98892 1.00298 0.96863 1.22281 0.91109 0.90551 0.99953 0.88818 1.21506 0.97139 1.00006 0.96068 1.21589 0.94810 1.02161 1.00766 1.60819 1.62133 1.01887 1.03659 0.94418 0.92571 0.91484 0.93214 0.91422 0.94491 0.92785 0.94362 0.96635 0.89764 0.87868 0.85315 0.84571 0.85249 0.87817 0.93039 0.91365 0.92018 0.91504 0.91947 0.93992 0.92430 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.80 71.98 0.71 -2.46 16 2 C -0.11 -2.97 5.56 30.59 0.17 -2.80 16 3 C 0.11 3.57 2.28 44.94 0.10 3.67 16 4 H 0.06 2.26 7.69 -2.39 -0.02 2.24 16 5 C -0.15 -5.49 4.80 30.65 0.15 -5.34 16 6 C 0.19 7.88 2.96 45.07 0.13 8.01 16 7 H 0.00 0.20 7.26 -2.39 -0.02 0.18 16 8 N -0.57 -25.85 2.02 -681.88 -1.38 -27.23 16 9 C -0.27 -13.88 7.14 84.04 0.60 -13.28 16 10 H 0.03 1.70 8.00 -2.91 -0.02 1.68 16 11 C 0.01 0.59 4.89 84.86 0.42 1.01 16 12 N -0.88 -50.20 13.11 21.65 0.28 -49.92 16 13 Si 0.92 44.17 29.66 68.60 2.03 46.21 16 14 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 15 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 17 C 0.17 6.79 4.05 85.63 0.35 7.14 16 18 C -0.07 -2.82 4.80 -19.87 -0.10 -2.91 16 19 C -0.11 -4.56 9.70 22.27 0.22 -4.34 16 20 C -0.13 -4.81 10.05 22.27 0.22 -4.58 16 21 C -0.14 -4.85 10.05 22.27 0.22 -4.63 16 22 C -0.14 -4.92 10.05 22.27 0.22 -4.70 16 23 C -0.11 -4.71 9.07 22.27 0.20 -4.50 16 24 C -0.15 -4.88 4.35 30.65 0.13 -4.74 16 25 C 0.07 2.02 1.61 44.94 0.07 2.09 16 26 H 0.09 3.11 3.95 -2.39 -0.01 3.10 16 27 C -0.11 -2.50 5.56 30.59 0.17 -2.33 16 28 C -0.14 -2.86 9.80 71.98 0.71 -2.16 16 29 N -0.66 -17.67 5.04 -469.57 -2.37 -20.03 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.07 1.56 7.75 -2.39 -0.02 1.54 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.61 7.71 -2.39 -0.02 1.59 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.25 13.92 8.32 -92.71 -0.77 13.15 16 38 H 0.02 0.66 7.67 -2.39 -0.02 0.64 16 39 H 0.08 3.14 3.70 -2.38 -0.01 3.13 16 40 H 0.10 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 43 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.10 4.25 8.06 -2.91 -0.02 4.23 16 45 H 0.05 1.85 7.25 -2.38 -0.02 1.83 16 46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 1.35 7.75 -2.38 -0.02 1.33 16 50 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 51 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.34 8.09 8.73 -89.70 -0.78 7.31 16 Total: -1.00 -58.83 395.13 3.35 -55.48 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.09 Total: 32.37 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 4.69 Total: -36.86 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -3.46 Total: -97.19 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.21 kcal Total: -58.83 3.35 -55.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246831072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.614 kcal (2) G-P(sol) polarization free energy of solvation -58.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds