Wall clock time and date at job start Tue Mar 31 2020 11:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46825 * 2 1 4 4 H 1.08993 * 109.45811 * 304.97817 * 3 2 1 5 5 C 1.53038 * 109.45959 * 185.00103 * 3 2 1 6 6 C 1.53124 * 109.27572 * 180.80852 * 5 3 2 7 7 N 1.46490 * 109.52414 * 177.55870 * 6 5 3 8 8 C 1.36937 * 120.00372 * 300.12801 * 7 6 5 9 9 H 1.08000 * 120.00008 * 336.67542 * 8 7 6 10 10 C 1.38809 * 120.00307 * 156.94208 * 8 7 6 11 11 N 1.31618 * 120.00080 * 48.29404 * 10 8 7 12 12 Si 1.86806 * 120.00247 * 228.29126 * 10 8 7 13 13 H 1.48501 * 109.46930 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46939 * 119.99927 * 12 10 8 15 15 H 1.48494 * 109.46970 * 240.00067 * 12 10 8 16 16 C 1.46507 * 120.00151 * 120.12404 * 7 6 5 17 17 C 1.50697 * 109.47241 * 272.86745 * 16 7 6 18 18 C 1.38226 * 120.00213 * 263.40369 * 17 16 7 19 19 C 1.38245 * 120.00138 * 179.78889 * 18 17 16 20 20 C 1.38227 * 119.99899 * 0.43757 * 19 18 17 21 21 C 1.38242 * 119.99862 * 359.81535 * 20 19 18 22 22 C 1.38234 * 119.99991 * 359.97438 * 21 20 19 23 23 C 1.53123 * 109.21175 * 57.62247 * 6 5 3 24 24 C 1.53041 * 109.27739 * 302.44105 * 23 6 5 25 25 H 1.08995 * 109.46366 * 179.13236 * 24 23 6 26 26 C 1.53001 * 109.40252 * 299.07570 * 24 23 6 27 27 C 1.52997 * 109.47485 * 185.07810 * 26 24 23 28 28 N 1.46847 * 109.45882 * 64.95089 * 3 2 1 29 29 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47277 * 299.99372 * 1 2 3 31 31 H 1.08998 * 109.47900 * 59.99793 * 1 2 3 32 32 H 1.09002 * 109.47277 * 240.00628 * 2 1 3 33 33 H 1.08998 * 109.47900 * 120.00207 * 2 1 3 34 34 H 1.08993 * 109.50284 * 60.86984 * 5 3 2 35 35 H 1.08997 * 109.50493 * 300.74499 * 5 3 2 36 36 H 1.09004 * 109.52306 * 297.68986 * 6 5 3 37 37 H 0.96996 * 120.00343 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.46920 * 32.86769 * 16 7 6 39 39 H 1.08995 * 109.47305 * 152.86695 * 16 7 6 40 40 H 1.07998 * 120.00186 * 359.97438 * 18 17 16 41 41 H 1.08000 * 119.99873 * 180.27392 * 19 18 17 42 42 H 1.07995 * 120.00103 * 179.83328 * 20 19 18 43 43 H 1.08003 * 120.00002 * 179.97438 * 21 20 19 44 44 H 1.08002 * 119.99389 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.50355 * 62.32109 * 23 6 5 46 46 H 1.09001 * 109.49867 * 182.43790 * 23 6 5 47 47 H 1.09006 * 109.47344 * 305.08167 * 26 24 23 48 48 H 1.09003 * 109.47219 * 65.07746 * 26 24 23 49 49 H 1.09000 * 109.47759 * 179.97438 * 27 26 24 50 50 H 1.09006 * 109.47121 * 300.00494 * 27 26 24 51 51 H 1.09003 * 109.46945 * 59.99768 * 27 26 24 52 52 H 1.00896 * 110.99947 * 305.85597 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6055 1.9813 -0.8420 5 6 3.5651 1.4442 -0.1258 6 6 4.0725 2.8888 -0.1050 7 7 5.5361 2.8945 -0.1665 8 6 6.2650 2.2724 0.8117 9 1 5.8325 2.1126 1.7883 10 6 7.5617 1.8521 0.5498 11 7 8.4163 2.6725 -0.0239 12 14 8.0941 0.1220 1.0115 13 1 6.9551 -0.5957 1.6382 14 1 8.5257 -0.6054 -0.2091 15 1 9.2246 0.1918 1.9719 16 6 6.2202 3.5658 -1.2746 17 6 6.3652 2.6084 -2.4293 18 6 7.5441 1.9076 -2.6021 19 6 7.6756 1.0261 -3.6589 20 6 6.6315 0.8521 -4.5478 21 6 5.4544 1.5569 -4.3780 22 6 5.3214 2.4352 -3.3188 23 6 3.6120 3.5660 1.1888 24 6 2.0855 3.5015 1.2772 25 1 1.7554 3.9692 2.2047 26 6 1.4756 4.2440 0.0866 27 6 -0.0461 4.2899 0.2393 28 7 1.6502 2.0992 1.2544 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8533 0.9707 -1.0642 35 1 3.9997 0.8939 0.7087 36 1 3.6698 3.4287 -0.9621 37 1 9.3225 2.3789 -0.2066 38 1 5.6372 4.4308 -1.5908 39 1 7.2071 3.8929 -0.9476 40 1 8.3614 2.0465 -1.9099 41 1 8.5951 0.4752 -3.7913 42 1 6.7352 0.1655 -5.3749 43 1 4.6387 1.4214 -5.0728 44 1 4.4016 2.9854 -3.1859 45 1 4.0474 3.0500 2.0445 46 1 3.9338 4.6075 1.1887 47 1 1.8681 5.2603 0.0523 48 1 1.7326 3.7240 -0.8363 49 1 -0.4806 4.8192 -0.6087 50 1 -0.4386 3.2735 0.2736 51 1 -0.3031 4.8099 1.1622 52 1 0.6554 2.0268 1.4065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246831073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:52 Heat of formation + Delta-G solvation = 44.668308 kcal Electronic energy + Delta-G solvation = -28768.802702 eV Core-core repulsion = 25347.371701 eV Total energy + Delta-G solvation = -3421.431000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.47057 -38.34243 -35.61310 -34.30580 -32.44573 -31.26157 -30.47261 -29.93284 -28.97475 -28.76515 -25.46971 -24.63381 -23.17839 -22.75843 -21.69178 -21.31511 -20.45141 -19.65315 -18.27560 -16.68105 -16.25296 -15.75953 -15.33893 -14.94266 -14.45291 -14.25698 -14.09454 -13.95317 -13.66537 -13.44705 -13.18077 -13.07402 -12.83429 -12.60104 -12.47254 -12.28777 -12.01656 -11.83177 -11.72783 -11.34747 -11.29141 -11.05974 -10.99424 -10.91546 -10.67190 -10.60822 -10.49479 -10.34879 -10.25962 -10.17152 -9.90544 -9.82460 -9.63706 -9.38557 -8.26476 -8.09615 -8.00690 -7.65409 -6.83379 -6.07610 -3.05519 2.20267 2.27445 3.41208 3.55876 3.62612 4.46857 4.49667 4.67615 4.98047 5.07863 5.12164 5.13088 5.19081 5.28509 5.31774 5.52719 5.58215 5.64250 5.67577 5.71138 5.76450 5.78627 5.80670 5.93541 5.98713 6.05631 6.06430 6.09473 6.13437 6.20026 6.23913 6.33029 6.36068 6.42375 6.45956 6.48834 6.56754 6.66110 6.75998 6.83538 6.90958 6.98656 7.11941 7.23856 7.27022 7.42284 7.50457 7.53396 7.76269 7.79676 7.88408 8.00664 8.37992 9.13643 9.84453 10.35880 10.95427 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.005338 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.269062 B = 5244.400677 C = 5825.279868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.088 3.912 4 H 0.034 0.966 5 C -0.114 4.114 6 C 0.187 3.813 7 N -0.580 5.580 8 C -0.270 4.270 9 H 0.082 0.918 10 C 0.042 3.958 11 N -0.847 5.847 12 Si 0.829 3.171 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.296 1.296 16 C 0.162 3.838 17 C -0.062 4.062 18 C -0.101 4.101 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.119 4.119 24 C 0.092 3.908 25 H 0.072 0.928 26 C -0.163 4.163 27 C -0.151 4.151 28 N -0.674 5.674 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.257 0.743 38 H 0.017 0.983 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.050 0.950 50 H 0.049 0.951 51 H 0.052 0.948 52 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.340 0.807 -3.627 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.022 4.022 4 H 0.052 0.948 5 C -0.153 4.153 6 C 0.079 3.921 7 N -0.298 5.298 8 C -0.396 4.396 9 H 0.100 0.900 10 C -0.159 4.159 11 N -0.490 5.490 12 Si 0.656 3.344 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.224 1.224 16 C 0.036 3.964 17 C -0.065 4.065 18 C -0.120 4.120 19 C -0.157 4.157 20 C -0.162 4.162 21 C -0.156 4.156 22 C -0.143 4.143 23 C -0.159 4.159 24 C -0.019 4.019 25 H 0.090 0.910 26 C -0.202 4.202 27 C -0.208 4.208 28 N -0.306 5.306 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.071 0.929 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.610 0.623 -3.288 12.083 hybrid contribution -0.397 -0.931 -0.607 1.181 sum -12.007 -0.308 -3.895 12.627 Atomic orbital electron populations 1.21798 0.96698 1.01263 1.01150 1.21597 0.94876 0.96842 1.02457 1.21574 0.97151 0.93352 0.90157 0.94831 1.22017 0.91413 0.99736 1.02165 1.20265 0.84129 0.93295 0.94383 1.44050 0.99116 1.62932 1.23751 1.18850 0.96640 1.30689 0.93409 0.90043 1.24726 0.95678 0.97643 0.97834 1.70242 1.03484 1.31956 1.43271 0.87326 0.77937 0.91377 0.77746 1.20189 1.21180 1.22415 1.20505 1.01198 0.89442 0.85255 1.20986 0.92226 0.97894 0.95353 1.22065 0.99761 0.93959 0.96188 1.21172 0.98293 0.99862 0.96324 1.20875 0.94536 1.00949 0.99804 1.20888 0.97292 0.98620 0.98767 1.20995 0.98419 0.99349 0.95562 1.22076 0.91956 1.00577 1.01291 1.21587 0.96501 0.87368 0.96403 0.90998 1.22323 0.95247 1.01596 1.01037 1.21781 0.96552 1.01160 1.01345 1.60551 1.19445 1.14680 1.35964 0.93023 0.92773 0.93330 0.91863 0.91162 0.92612 0.90738 0.93556 0.93199 0.96450 0.85605 0.83343 0.87707 0.87803 0.87762 0.87823 0.90856 0.92509 0.91716 0.91263 0.93099 0.93220 0.92881 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.69 37.16 0.36 -1.26 16 2 C -0.12 -1.60 5.61 -26.73 -0.15 -1.75 16 3 C 0.09 1.29 2.20 -67.72 -0.15 1.14 16 4 H 0.03 0.49 6.08 -51.93 -0.32 0.18 16 5 C -0.11 -2.11 4.66 -26.65 -0.12 -2.23 16 6 C 0.19 3.56 2.39 -67.81 -0.16 3.40 16 7 N -0.58 -13.11 2.46 -166.88 -0.41 -13.52 16 8 C -0.27 -6.84 8.19 -15.06 -0.12 -6.96 16 9 H 0.08 2.14 6.93 -52.49 -0.36 1.77 16 10 C 0.04 1.07 4.22 -17.43 -0.07 1.00 16 11 N -0.85 -21.80 8.28 55.49 0.46 -21.34 16 12 Si 0.83 20.51 29.69 -169.99 -5.05 15.46 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 16 C 0.16 3.62 5.20 -5.19 -0.03 3.59 16 17 C -0.06 -1.33 5.39 -104.63 -0.56 -1.90 16 18 C -0.10 -2.24 8.83 -39.58 -0.35 -2.59 16 19 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 20 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 21 C -0.14 -2.43 10.05 -39.58 -0.40 -2.82 16 22 C -0.12 -2.39 9.73 -39.58 -0.39 -2.77 16 23 C -0.12 -2.10 4.90 -26.65 -0.13 -2.23 16 24 C 0.09 1.30 3.13 -67.72 -0.21 1.09 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 C -0.16 -2.05 4.68 -26.73 -0.13 -2.17 16 27 C -0.15 -1.56 9.68 37.16 0.36 -1.20 16 28 N -0.67 -9.45 6.24 -99.77 -0.62 -10.07 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.55 6.63 -51.93 -0.34 0.20 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.59 7.59 -51.93 -0.39 1.20 16 36 H 0.05 0.86 6.31 -51.93 -0.33 0.53 16 37 H 0.26 6.41 7.93 -40.82 -0.32 6.08 16 38 H 0.02 0.36 7.97 -51.93 -0.41 -0.05 16 39 H 0.13 3.15 5.31 -51.93 -0.28 2.88 16 40 H 0.15 3.53 4.77 -52.49 -0.25 3.28 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.10 1.55 8.06 -52.48 -0.42 1.12 16 44 H 0.10 1.84 7.99 -52.49 -0.42 1.42 16 45 H 0.07 1.47 6.89 -51.93 -0.36 1.11 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.95 4.80 -51.93 -0.25 0.70 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.05 0.50 6.92 -51.93 -0.36 0.14 16 51 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.33 4.01 5.56 -39.29 -0.22 3.79 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -25.57 383.91 -11.79 -37.36 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.91 Total: 10.06 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -3.05 Total: -23.74 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.57 Total: -44.92 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.05 Total: 15.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -25.57 -11.79 -37.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246831073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.029 kcal (2) G-P(sol) polarization free energy of solvation -25.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds