Wall clock time and date at job start Tue Mar 31 2020 11:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46825 * 2 1 4 4 H 1.08993 * 109.45811 * 304.97817 * 3 2 1 5 5 C 1.53038 * 109.45959 * 185.00103 * 3 2 1 6 6 C 1.53124 * 109.27572 * 180.80852 * 5 3 2 7 7 N 1.46490 * 109.52414 * 177.55870 * 6 5 3 8 8 C 1.36937 * 120.00372 * 300.12801 * 7 6 5 9 9 H 1.08000 * 120.00008 * 336.67542 * 8 7 6 10 10 C 1.38809 * 120.00307 * 156.94208 * 8 7 6 11 11 N 1.31618 * 120.00080 * 48.29404 * 10 8 7 12 12 Si 1.86806 * 120.00247 * 228.29126 * 10 8 7 13 13 H 1.48501 * 109.46930 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46939 * 119.99927 * 12 10 8 15 15 H 1.48494 * 109.46970 * 240.00067 * 12 10 8 16 16 C 1.46507 * 120.00151 * 120.12404 * 7 6 5 17 17 C 1.50697 * 109.47241 * 272.86745 * 16 7 6 18 18 C 1.38226 * 120.00213 * 263.40369 * 17 16 7 19 19 C 1.38245 * 120.00138 * 179.78889 * 18 17 16 20 20 C 1.38227 * 119.99899 * 0.43757 * 19 18 17 21 21 C 1.38242 * 119.99862 * 359.81535 * 20 19 18 22 22 C 1.38234 * 119.99991 * 359.97438 * 21 20 19 23 23 C 1.53123 * 109.21175 * 57.62247 * 6 5 3 24 24 C 1.53041 * 109.27739 * 302.44105 * 23 6 5 25 25 H 1.08995 * 109.46366 * 179.13236 * 24 23 6 26 26 C 1.53001 * 109.40252 * 299.07570 * 24 23 6 27 27 C 1.52997 * 109.47485 * 185.07810 * 26 24 23 28 28 N 1.46847 * 109.45882 * 64.95089 * 3 2 1 29 29 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47277 * 299.99372 * 1 2 3 31 31 H 1.08998 * 109.47900 * 59.99793 * 1 2 3 32 32 H 1.09002 * 109.47277 * 240.00628 * 2 1 3 33 33 H 1.08998 * 109.47900 * 120.00207 * 2 1 3 34 34 H 1.08993 * 109.50284 * 60.86984 * 5 3 2 35 35 H 1.08997 * 109.50493 * 300.74499 * 5 3 2 36 36 H 1.09004 * 109.52306 * 297.68986 * 6 5 3 37 37 H 0.96996 * 120.00343 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.46920 * 32.86769 * 16 7 6 39 39 H 1.08995 * 109.47305 * 152.86695 * 16 7 6 40 40 H 1.07998 * 120.00186 * 359.97438 * 18 17 16 41 41 H 1.08000 * 119.99873 * 180.27392 * 19 18 17 42 42 H 1.07995 * 120.00103 * 179.83328 * 20 19 18 43 43 H 1.08003 * 120.00002 * 179.97438 * 21 20 19 44 44 H 1.08002 * 119.99389 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.50355 * 62.32109 * 23 6 5 46 46 H 1.09001 * 109.49867 * 182.43790 * 23 6 5 47 47 H 1.09006 * 109.47344 * 305.08167 * 26 24 23 48 48 H 1.09003 * 109.47219 * 65.07746 * 26 24 23 49 49 H 1.09000 * 109.47759 * 179.97438 * 27 26 24 50 50 H 1.09006 * 109.47121 * 300.00494 * 27 26 24 51 51 H 1.09003 * 109.46945 * 59.99768 * 27 26 24 52 52 H 1.00896 * 110.99947 * 305.85597 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6055 1.9813 -0.8420 5 6 3.5651 1.4442 -0.1258 6 6 4.0725 2.8888 -0.1050 7 7 5.5361 2.8945 -0.1665 8 6 6.2650 2.2724 0.8117 9 1 5.8325 2.1126 1.7883 10 6 7.5617 1.8521 0.5498 11 7 8.4163 2.6725 -0.0239 12 14 8.0941 0.1220 1.0115 13 1 6.9551 -0.5957 1.6382 14 1 8.5257 -0.6054 -0.2091 15 1 9.2246 0.1918 1.9719 16 6 6.2202 3.5658 -1.2746 17 6 6.3652 2.6084 -2.4293 18 6 7.5441 1.9076 -2.6021 19 6 7.6756 1.0261 -3.6589 20 6 6.6315 0.8521 -4.5478 21 6 5.4544 1.5569 -4.3780 22 6 5.3214 2.4352 -3.3188 23 6 3.6120 3.5660 1.1888 24 6 2.0855 3.5015 1.2772 25 1 1.7554 3.9692 2.2047 26 6 1.4756 4.2440 0.0866 27 6 -0.0461 4.2899 0.2393 28 7 1.6502 2.0992 1.2544 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8533 0.9707 -1.0642 35 1 3.9997 0.8939 0.7087 36 1 3.6698 3.4287 -0.9621 37 1 9.3225 2.3789 -0.2066 38 1 5.6372 4.4308 -1.5908 39 1 7.2071 3.8929 -0.9476 40 1 8.3614 2.0465 -1.9099 41 1 8.5951 0.4752 -3.7913 42 1 6.7352 0.1655 -5.3749 43 1 4.6387 1.4214 -5.0728 44 1 4.4016 2.9854 -3.1859 45 1 4.0474 3.0500 2.0445 46 1 3.9338 4.6075 1.1887 47 1 1.8681 5.2603 0.0523 48 1 1.7326 3.7240 -0.8363 49 1 -0.4806 4.8192 -0.6087 50 1 -0.4386 3.2735 0.2736 51 1 -0.3031 4.8099 1.1622 52 1 0.6554 2.0268 1.4065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246831073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:50 Heat of formation + Delta-G solvation = 33.972910 kcal Electronic energy + Delta-G solvation = -28769.266489 eV Core-core repulsion = 25347.371701 eV Total energy + Delta-G solvation = -3421.894788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.80962 -39.83431 -37.25493 -35.38780 -34.12504 -32.86808 -31.63475 -31.43863 -30.50614 -29.97906 -27.28778 -25.99679 -24.33023 -24.16189 -23.21275 -22.61157 -21.87432 -21.20803 -19.65246 -18.37665 -17.58053 -17.24553 -16.80499 -16.42115 -15.99848 -15.77763 -15.62563 -15.27785 -14.99403 -14.81701 -14.52553 -14.24700 -14.21010 -14.06385 -13.83351 -13.57434 -13.43297 -13.27065 -13.05234 -12.91592 -12.78526 -12.53735 -12.30163 -12.20699 -12.15467 -12.04926 -11.96026 -11.90663 -11.76394 -11.54797 -11.47882 -11.39259 -11.14511 -10.86053 -10.13538 -9.60923 -9.29400 -9.14817 -8.68207 -8.05542 -5.03165 0.68310 0.76021 1.36338 1.49055 1.55912 2.51160 3.00911 3.10763 3.34369 3.72503 3.96922 3.99887 4.15880 4.18349 4.23694 4.26401 4.28804 4.35050 4.38270 4.43221 4.50330 4.53879 4.65722 4.69370 4.75575 4.79991 4.85689 4.86739 4.93484 4.98217 5.04789 5.08194 5.15206 5.17960 5.21017 5.25152 5.28961 5.34955 5.41622 5.44211 5.45223 5.51757 5.57549 5.67614 5.72446 5.75823 5.84006 5.90055 6.17069 6.30109 6.36612 6.50185 6.72780 7.19051 7.96004 8.42979 8.94776 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.005338 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.269062 B = 5244.400677 C = 5825.279868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.098 3.902 4 H 0.046 0.954 5 C -0.102 4.102 6 C 0.187 3.813 7 N -0.589 5.589 8 C -0.268 4.268 9 H 0.066 0.934 10 C 0.017 3.983 11 N -0.853 5.853 12 Si 0.861 3.139 13 H -0.286 1.286 14 H -0.293 1.293 15 H -0.300 1.300 16 C 0.166 3.834 17 C -0.081 4.081 18 C -0.131 4.131 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.131 4.131 22 C -0.128 4.128 23 C -0.113 4.113 24 C 0.099 3.901 25 H 0.085 0.915 26 C -0.157 4.157 27 C -0.145 4.145 28 N -0.681 5.681 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.057 0.943 37 H 0.255 0.745 38 H 0.028 0.972 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.055 0.945 51 H 0.061 0.939 52 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 0.572 -5.382 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.012 4.012 4 H 0.064 0.936 5 C -0.142 4.142 6 C 0.081 3.919 7 N -0.308 5.308 8 C -0.395 4.395 9 H 0.083 0.917 10 C -0.183 4.183 11 N -0.496 5.496 12 Si 0.690 3.310 13 H -0.212 1.212 14 H -0.220 1.220 15 H -0.228 1.228 16 C 0.040 3.960 17 C -0.084 4.084 18 C -0.150 4.150 19 C -0.168 4.168 20 C -0.156 4.156 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.012 4.012 25 H 0.103 0.897 26 C -0.196 4.196 27 C -0.203 4.203 28 N -0.315 5.315 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.136 0.864 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.856 0.393 -5.041 15.693 hybrid contribution 0.623 -0.849 -0.081 1.056 sum -14.233 -0.456 -5.122 15.133 Atomic orbital electron populations 1.21737 0.94054 1.02335 1.02031 1.21562 0.97135 0.95389 1.01565 1.21408 0.94094 0.94724 0.90946 0.93604 1.21842 0.94414 0.98390 0.99578 1.20404 0.82134 0.93931 0.95425 1.44178 1.00521 1.62870 1.23254 1.18796 0.96667 1.30611 0.93469 0.91671 1.24946 0.96037 0.98575 0.98729 1.70305 1.03413 1.32121 1.43790 0.86810 0.77034 0.90336 0.76827 1.21217 1.21991 1.22778 1.20305 0.99751 0.90234 0.85687 1.20880 0.93175 0.98413 0.95902 1.21959 0.99645 0.96021 0.97354 1.21386 0.99764 0.99499 0.96132 1.21277 0.93676 1.00795 0.99863 1.21309 0.98200 0.97003 0.98332 1.21155 0.98098 0.99865 0.95528 1.21948 0.94869 0.99374 0.99055 1.21479 0.93686 0.87941 0.98048 0.89717 1.22227 0.97070 1.00955 0.99339 1.21735 0.94308 1.01909 1.02318 1.60436 1.20789 1.14579 1.35672 0.91968 0.91939 0.92305 0.92229 0.92729 0.94305 0.94406 0.92498 0.93339 0.95364 0.88639 0.85805 0.86497 0.84250 0.83990 0.86401 0.94032 0.93127 0.91813 0.92277 0.92072 0.92564 0.91986 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.69 71.98 0.70 -1.92 16 2 C -0.12 -2.97 5.61 30.60 0.17 -2.80 16 3 C 0.10 2.76 2.20 44.94 0.10 2.86 16 4 H 0.05 1.22 6.08 -2.39 -0.01 1.20 16 5 C -0.10 -3.85 4.66 30.65 0.14 -3.71 16 6 C 0.19 7.22 2.39 45.08 0.11 7.33 16 7 N -0.59 -27.54 2.46 -681.90 -1.68 -29.22 16 8 C -0.27 -14.23 8.19 84.03 0.69 -13.54 16 9 H 0.07 3.63 6.93 -2.91 -0.02 3.61 16 10 C 0.02 0.91 4.22 84.86 0.36 1.26 16 11 N -0.85 -45.95 8.28 21.65 0.18 -45.77 16 12 Si 0.86 43.77 29.69 68.60 2.04 45.81 16 13 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 14 H -0.29 -15.12 7.11 99.48 0.71 -14.42 16 15 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 16 C 0.17 7.65 5.20 85.63 0.45 8.10 16 17 C -0.08 -3.53 5.39 -19.87 -0.11 -3.64 16 18 C -0.13 -5.92 8.83 22.27 0.20 -5.72 16 19 C -0.15 -5.79 10.05 22.27 0.22 -5.56 16 20 C -0.14 -4.52 10.05 22.27 0.22 -4.29 16 21 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 22 C -0.13 -4.70 9.73 22.27 0.22 -4.48 16 23 C -0.11 -4.03 4.90 30.65 0.15 -3.88 16 24 C 0.10 2.65 3.13 44.94 0.14 2.79 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 C -0.16 -3.54 4.68 30.59 0.14 -3.40 16 27 C -0.15 -2.46 9.68 71.98 0.70 -1.77 16 28 N -0.68 -17.90 6.24 -469.56 -2.93 -20.83 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.03 6.63 -2.39 -0.02 1.02 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.68 7.59 -2.39 -0.02 1.66 16 36 H 0.06 2.08 6.31 -2.38 -0.02 2.06 16 37 H 0.26 13.38 7.93 -92.71 -0.74 12.65 16 38 H 0.03 1.20 7.97 -2.39 -0.02 1.18 16 39 H 0.10 5.02 5.31 -2.39 -0.01 5.01 16 40 H 0.12 6.18 4.77 -2.91 -0.01 6.17 16 41 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 42 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 44 H 0.12 3.92 7.99 -2.91 -0.02 3.89 16 45 H 0.04 1.73 6.89 -2.39 -0.02 1.72 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.06 1.46 4.80 -2.39 -0.01 1.45 16 49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.06 0.89 6.92 -2.38 -0.02 0.87 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.35 7.36 5.56 -89.70 -0.50 6.86 16 Total: -1.00 -58.17 383.91 2.85 -55.31 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.43 Total: 31.03 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 4.82 Total: -36.32 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -4.43 Total: -95.83 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.04 Total: 45.81 kcal Total: -58.17 2.85 -55.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246831073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.285 kcal (2) G-P(sol) polarization free energy of solvation -58.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds