Wall clock time and date at job start Tue Mar 31 2020 11:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47487 * 2 1 4 4 H 1.08996 * 109.45272 * 55.02735 * 3 2 1 5 5 C 1.53038 * 109.46388 * 175.00278 * 3 2 1 6 6 C 1.53123 * 109.27917 * 60.83849 * 5 3 2 7 7 N 1.46501 * 109.52194 * 177.55977 * 6 5 3 8 8 C 1.36935 * 119.99878 * 305.00925 * 7 6 5 9 9 H 1.07999 * 119.99961 * 321.72122 * 8 7 6 10 10 C 1.38811 * 119.99955 * 141.71633 * 8 7 6 11 11 N 1.31618 * 120.00256 * 156.92729 * 10 8 7 12 12 Si 1.86803 * 120.00004 * 336.93449 * 10 8 7 13 13 H 1.48496 * 109.47158 * 95.38857 * 12 10 8 14 14 H 1.48504 * 109.46750 * 215.38867 * 12 10 8 15 15 H 1.48498 * 109.47053 * 335.38677 * 12 10 8 16 16 C 1.46497 * 119.99711 * 124.73358 * 7 6 5 17 17 C 1.50703 * 109.46886 * 90.00293 * 16 7 6 18 18 C 1.38232 * 119.99790 * 269.72502 * 17 16 7 19 19 C 1.38240 * 119.99961 * 179.79086 * 18 17 16 20 20 C 1.38235 * 119.99617 * 0.45754 * 19 18 17 21 21 C 1.38226 * 120.00262 * 359.77143 * 20 19 18 22 22 C 1.38235 * 120.00007 * 89.99734 * 17 16 7 23 23 C 1.53114 * 109.16238 * 57.65127 * 6 5 3 24 24 C 1.53040 * 109.28176 * 302.34826 * 23 6 5 25 25 H 1.08996 * 109.45890 * 299.16577 * 24 23 6 26 26 C 1.52992 * 109.46345 * 179.19617 * 24 23 6 27 27 C 1.53006 * 109.47156 * 174.94779 * 26 24 23 28 28 N 1.46844 * 109.52272 * 59.17669 * 24 23 6 29 29 H 1.08995 * 109.47373 * 59.99791 * 1 2 3 30 30 H 1.08996 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46497 * 300.00147 * 1 2 3 32 32 H 1.09001 * 109.47152 * 239.99651 * 2 1 3 33 33 H 1.08995 * 109.47373 * 120.00209 * 2 1 3 34 34 H 1.08996 * 109.50337 * 300.89457 * 5 3 2 35 35 H 1.09002 * 109.49772 * 180.77567 * 5 3 2 36 36 H 1.08996 * 109.51630 * 297.68368 * 6 5 3 37 37 H 0.97000 * 120.00284 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.47116 * 209.99574 * 16 7 6 39 39 H 1.08990 * 109.47685 * 330.00063 * 16 7 6 40 40 H 1.07999 * 120.00014 * 359.97438 * 18 17 16 41 41 H 1.08001 * 120.00178 * 180.25254 * 19 18 17 42 42 H 1.08001 * 119.99357 * 179.79501 * 20 19 18 43 43 H 1.08001 * 119.99968 * 179.97438 * 21 20 19 44 44 H 1.07995 * 120.00451 * 359.97438 * 22 17 16 45 45 H 1.09006 * 109.50635 * 62.28660 * 23 6 5 46 46 H 1.09000 * 109.50453 * 182.40617 * 23 6 5 47 47 H 1.09003 * 109.47198 * 294.94182 * 26 24 23 48 48 H 1.08997 * 109.47731 * 54.94489 * 26 24 23 49 49 H 1.08998 * 109.46905 * 59.99821 * 27 26 24 50 50 H 1.08999 * 109.46845 * 179.97438 * 27 26 24 51 51 H 1.09003 * 109.46580 * 299.99782 * 27 26 24 52 52 H 1.00899 * 111.00149 * 174.16118 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6057 1.9811 0.8422 5 6 3.5653 1.4440 0.1257 6 6 4.1718 0.7038 -1.0697 7 7 5.6336 0.7524 -0.9852 8 6 6.2735 1.9583 -0.8788 9 1 5.9104 2.8129 -1.4303 10 6 7.3890 2.0824 -0.0620 11 7 8.2610 3.0438 -0.2803 12 14 7.6527 0.8847 1.3471 13 1 8.5496 -0.2123 0.9031 14 1 8.2723 1.5975 2.4932 15 1 6.3458 0.3170 1.7654 16 6 6.4102 -0.4895 -1.0084 17 6 6.7560 -0.8392 -2.4330 18 6 5.9044 -1.6359 -3.1752 19 6 6.2194 -1.9531 -4.4833 20 6 7.3906 -1.4813 -5.0461 21 6 8.2444 -0.6885 -4.3023 22 6 7.9274 -0.3678 -2.9956 23 6 3.7114 1.3785 -2.3648 24 6 2.1820 1.3789 -2.4184 25 1 1.8180 0.3515 -2.4070 26 6 1.7170 2.0701 -3.7016 27 6 0.1953 1.9599 -3.8176 28 7 1.6504 2.0992 -1.2544 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8548 0.9426 1.0492 35 1 3.9282 2.4717 0.1396 36 1 3.8407 -0.3346 -1.0612 37 1 9.0406 3.1303 0.2903 38 1 7.3272 -0.3554 -0.4345 39 1 5.8213 -1.2947 -0.5694 40 1 4.9916 -2.0081 -2.7341 41 1 5.5521 -2.5722 -5.0646 42 1 7.6382 -1.7319 -6.0670 43 1 9.1596 -0.3203 -4.7419 44 1 8.5946 0.2514 -2.4144 45 1 4.0766 2.4052 -2.3901 46 1 4.1054 0.8303 -3.2206 47 1 2.0039 3.1212 -3.6726 48 1 2.1826 1.5899 -4.5622 49 1 -0.2704 2.4401 -2.9570 50 1 -0.1360 2.4528 -4.7316 51 1 -0.0917 0.9087 -3.8466 52 1 0.6479 2.1956 -1.3157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246831074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:56 Heat of formation + Delta-G solvation = 34.763421 kcal Electronic energy + Delta-G solvation = -28574.787882 eV Core-core repulsion = 25152.927374 eV Total energy + Delta-G solvation = -3421.860508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.52177 -38.57497 -35.80610 -34.32130 -32.18778 -31.73388 -30.50288 -30.28825 -29.18652 -28.79665 -25.59097 -24.76657 -23.17551 -22.81087 -21.90706 -21.34873 -20.78227 -19.77641 -18.24150 -16.75891 -16.33593 -15.84184 -15.45933 -15.14177 -14.65323 -14.59212 -14.26752 -14.10999 -13.71179 -13.43963 -13.19453 -13.13796 -12.83718 -12.70881 -12.60324 -12.39976 -12.27069 -11.97806 -11.90325 -11.68554 -11.36295 -11.23081 -11.07936 -10.99962 -10.81940 -10.69028 -10.62822 -10.42647 -10.30693 -10.12227 -9.97670 -9.84462 -9.63416 -9.35329 -8.47599 -8.32974 -8.09329 -8.00346 -6.79488 -5.98688 -3.38138 1.95852 2.00754 3.30061 3.47010 3.50765 4.34127 4.48778 4.52771 4.92307 5.05273 5.09246 5.15556 5.26232 5.27495 5.29955 5.35040 5.40155 5.44194 5.54965 5.62076 5.68710 5.73745 5.78477 5.78984 5.90927 5.94932 5.99376 6.01055 6.05845 6.10701 6.11379 6.18862 6.20649 6.25779 6.29118 6.37720 6.45012 6.50060 6.52693 6.63437 6.69516 6.77480 6.80973 7.00428 7.10020 7.15568 7.24073 7.39241 7.50477 7.62951 7.76479 8.06968 8.44172 9.00666 9.72863 10.13369 11.16536 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.005907 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.481855 B = 4738.901435 C = 6198.209073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 C 0.091 3.909 4 H 0.073 0.927 5 C -0.115 4.115 6 C 0.183 3.817 7 N -0.590 5.590 8 C -0.254 4.254 9 H 0.080 0.920 10 C 0.040 3.960 11 N -0.895 5.895 12 Si 0.866 3.134 13 H -0.287 1.287 14 H -0.302 1.302 15 H -0.268 1.268 16 C 0.167 3.833 17 C -0.075 4.075 18 C -0.119 4.119 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.092 4.092 23 C -0.116 4.116 24 C 0.089 3.911 25 H 0.034 0.966 26 C -0.119 4.119 27 C -0.152 4.152 28 N -0.673 5.673 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.123 0.877 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.047 0.953 52 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 -7.836 -4.718 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C -0.019 4.019 4 H 0.092 0.908 5 C -0.154 4.154 6 C 0.077 3.923 7 N -0.310 5.310 8 C -0.382 4.382 9 H 0.097 0.903 10 C -0.161 4.161 11 N -0.536 5.536 12 Si 0.696 3.304 13 H -0.215 1.215 14 H -0.230 1.230 15 H -0.193 1.193 16 C 0.042 3.958 17 C -0.078 4.078 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.142 4.142 22 C -0.111 4.111 23 C -0.155 4.155 24 C -0.021 4.021 25 H 0.051 0.949 26 C -0.157 4.157 27 C -0.209 4.209 28 N -0.305 5.305 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.141 0.859 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.066 0.934 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.425 -7.258 -4.608 14.298 hybrid contribution -0.285 -1.358 0.721 1.564 sum -11.710 -8.616 -3.888 15.049 Atomic orbital electron populations 1.21777 0.96483 1.01213 1.01341 1.22336 0.95403 0.99866 1.02678 1.21614 0.97107 0.91274 0.91940 0.90838 1.21949 0.91313 1.03408 0.98724 1.20397 0.83622 0.95691 0.92627 1.44172 0.99800 1.02169 1.84866 1.18646 1.09732 0.88192 1.21655 0.90253 1.25435 0.97039 0.96050 0.97571 1.69888 1.10917 1.34360 1.38461 0.87104 0.78118 0.80843 0.84326 1.21485 1.23015 1.19261 1.20302 0.96312 0.88836 0.90377 1.20896 0.93418 0.94166 0.99348 1.20910 0.99130 0.99381 0.94344 1.20943 0.97244 1.01170 0.95470 1.20923 0.95533 1.00050 0.99225 1.21094 0.99489 0.98847 0.94815 1.21156 0.97056 0.97901 0.94939 1.22024 0.91715 1.02957 0.98843 1.21535 0.96379 0.94575 0.89608 0.94857 1.21588 0.95076 1.01948 0.97092 1.21800 0.96793 1.00995 1.01344 1.60543 1.15996 1.52605 1.01389 0.93181 0.93137 0.92846 0.91313 0.91771 0.92641 0.89874 0.93725 0.92807 0.92023 0.93665 0.87316 0.87280 0.87264 0.86947 0.85856 0.90707 0.92638 0.91083 0.91894 0.92744 0.92983 0.93356 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.68 37.16 0.36 -1.20 16 2 C -0.16 -2.06 4.68 -26.73 -0.13 -2.19 16 3 C 0.09 1.32 3.12 -67.72 -0.21 1.11 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.11 -2.10 4.83 -26.65 -0.13 -2.23 16 6 C 0.18 3.44 2.40 -67.81 -0.16 3.28 16 7 N -0.59 -13.10 1.99 -166.89 -0.33 -13.43 16 8 C -0.25 -6.65 8.46 -15.06 -0.13 -6.77 16 9 H 0.08 2.32 7.16 -52.49 -0.38 1.94 16 10 C 0.04 1.09 5.29 -17.43 -0.09 0.99 16 11 N -0.90 -26.35 13.97 55.49 0.78 -25.58 16 12 Si 0.87 21.42 25.12 -169.99 -4.27 17.15 16 13 H -0.29 -6.96 6.66 56.52 0.38 -6.58 16 14 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.17 3.53 4.62 -5.19 -0.02 3.51 16 17 C -0.08 -1.48 5.46 -104.62 -0.57 -2.05 16 18 C -0.12 -2.03 9.70 -39.58 -0.38 -2.41 16 19 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 20 C -0.14 -2.15 10.05 -39.59 -0.40 -2.55 16 21 C -0.12 -2.14 10.05 -39.59 -0.40 -2.54 16 22 C -0.09 -1.84 9.70 -39.58 -0.38 -2.23 16 23 C -0.12 -2.07 4.73 -26.65 -0.13 -2.20 16 24 C 0.09 1.27 2.20 -67.73 -0.15 1.12 16 25 H 0.03 0.47 6.09 -51.93 -0.32 0.15 16 26 C -0.12 -1.53 5.61 -26.73 -0.15 -1.68 16 27 C -0.15 -1.57 9.69 37.16 0.36 -1.21 16 28 N -0.67 -9.43 6.24 -99.78 -0.62 -10.05 16 29 H 0.05 0.50 6.91 -51.93 -0.36 0.14 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.92 4.80 -51.93 -0.25 0.67 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.77 7.48 -51.93 -0.39 1.38 16 36 H 0.04 0.80 6.30 -51.93 -0.33 0.47 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 1.43 3.34 -51.93 -0.17 1.26 16 39 H 0.05 0.87 7.83 -51.93 -0.41 0.46 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.12 2.72 8.06 -52.49 -0.42 2.30 16 45 H 0.07 1.57 7.11 -51.93 -0.37 1.20 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.05 0.54 6.63 -51.93 -0.34 0.19 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 52 H 0.33 4.00 5.56 -39.29 -0.22 3.78 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -27.97 387.74 -10.75 -38.71 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -9.03 Total: 9.00 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -3.11 Total: -21.65 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.18 Total: -49.06 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.27 Total: 17.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.97 -10.75 -38.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246831074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.478 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds