Wall clock time and date at job start Tue Mar 31 2020 11:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47487 * 2 1 4 4 H 1.08996 * 109.45272 * 55.02735 * 3 2 1 5 5 C 1.53038 * 109.46388 * 175.00278 * 3 2 1 6 6 C 1.53123 * 109.27917 * 60.83849 * 5 3 2 7 7 N 1.46501 * 109.52194 * 177.55977 * 6 5 3 8 8 C 1.36935 * 119.99878 * 305.00925 * 7 6 5 9 9 H 1.07999 * 119.99961 * 321.72122 * 8 7 6 10 10 C 1.38811 * 119.99955 * 141.71633 * 8 7 6 11 11 N 1.31618 * 120.00256 * 156.92729 * 10 8 7 12 12 Si 1.86803 * 120.00004 * 336.93449 * 10 8 7 13 13 H 1.48496 * 109.47158 * 95.38857 * 12 10 8 14 14 H 1.48504 * 109.46750 * 215.38867 * 12 10 8 15 15 H 1.48498 * 109.47053 * 335.38677 * 12 10 8 16 16 C 1.46497 * 119.99711 * 124.73358 * 7 6 5 17 17 C 1.50703 * 109.46886 * 90.00293 * 16 7 6 18 18 C 1.38232 * 119.99790 * 269.72502 * 17 16 7 19 19 C 1.38240 * 119.99961 * 179.79086 * 18 17 16 20 20 C 1.38235 * 119.99617 * 0.45754 * 19 18 17 21 21 C 1.38226 * 120.00262 * 359.77143 * 20 19 18 22 22 C 1.38235 * 120.00007 * 89.99734 * 17 16 7 23 23 C 1.53114 * 109.16238 * 57.65127 * 6 5 3 24 24 C 1.53040 * 109.28176 * 302.34826 * 23 6 5 25 25 H 1.08996 * 109.45890 * 299.16577 * 24 23 6 26 26 C 1.52992 * 109.46345 * 179.19617 * 24 23 6 27 27 C 1.53006 * 109.47156 * 174.94779 * 26 24 23 28 28 N 1.46844 * 109.52272 * 59.17669 * 24 23 6 29 29 H 1.08995 * 109.47373 * 59.99791 * 1 2 3 30 30 H 1.08996 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46497 * 300.00147 * 1 2 3 32 32 H 1.09001 * 109.47152 * 239.99651 * 2 1 3 33 33 H 1.08995 * 109.47373 * 120.00209 * 2 1 3 34 34 H 1.08996 * 109.50337 * 300.89457 * 5 3 2 35 35 H 1.09002 * 109.49772 * 180.77567 * 5 3 2 36 36 H 1.08996 * 109.51630 * 297.68368 * 6 5 3 37 37 H 0.97000 * 120.00284 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.47116 * 209.99574 * 16 7 6 39 39 H 1.08990 * 109.47685 * 330.00063 * 16 7 6 40 40 H 1.07999 * 120.00014 * 359.97438 * 18 17 16 41 41 H 1.08001 * 120.00178 * 180.25254 * 19 18 17 42 42 H 1.08001 * 119.99357 * 179.79501 * 20 19 18 43 43 H 1.08001 * 119.99968 * 179.97438 * 21 20 19 44 44 H 1.07995 * 120.00451 * 359.97438 * 22 17 16 45 45 H 1.09006 * 109.50635 * 62.28660 * 23 6 5 46 46 H 1.09000 * 109.50453 * 182.40617 * 23 6 5 47 47 H 1.09003 * 109.47198 * 294.94182 * 26 24 23 48 48 H 1.08997 * 109.47731 * 54.94489 * 26 24 23 49 49 H 1.08998 * 109.46905 * 59.99821 * 27 26 24 50 50 H 1.08999 * 109.46845 * 179.97438 * 27 26 24 51 51 H 1.09003 * 109.46580 * 299.99782 * 27 26 24 52 52 H 1.00899 * 111.00149 * 174.16118 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6057 1.9811 0.8422 5 6 3.5653 1.4440 0.1257 6 6 4.1718 0.7038 -1.0697 7 7 5.6336 0.7524 -0.9852 8 6 6.2735 1.9583 -0.8788 9 1 5.9104 2.8129 -1.4303 10 6 7.3890 2.0824 -0.0620 11 7 8.2610 3.0438 -0.2803 12 14 7.6527 0.8847 1.3471 13 1 8.5496 -0.2123 0.9031 14 1 8.2723 1.5975 2.4932 15 1 6.3458 0.3170 1.7654 16 6 6.4102 -0.4895 -1.0084 17 6 6.7560 -0.8392 -2.4330 18 6 5.9044 -1.6359 -3.1752 19 6 6.2194 -1.9531 -4.4833 20 6 7.3906 -1.4813 -5.0461 21 6 8.2444 -0.6885 -4.3023 22 6 7.9274 -0.3678 -2.9956 23 6 3.7114 1.3785 -2.3648 24 6 2.1820 1.3789 -2.4184 25 1 1.8180 0.3515 -2.4070 26 6 1.7170 2.0701 -3.7016 27 6 0.1953 1.9599 -3.8176 28 7 1.6504 2.0992 -1.2544 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8548 0.9426 1.0492 35 1 3.9282 2.4717 0.1396 36 1 3.8407 -0.3346 -1.0612 37 1 9.0406 3.1303 0.2903 38 1 7.3272 -0.3554 -0.4345 39 1 5.8213 -1.2947 -0.5694 40 1 4.9916 -2.0081 -2.7341 41 1 5.5521 -2.5722 -5.0646 42 1 7.6382 -1.7319 -6.0670 43 1 9.1596 -0.3203 -4.7419 44 1 8.5946 0.2514 -2.4144 45 1 4.0766 2.4052 -2.3901 46 1 4.1054 0.8303 -3.2206 47 1 2.0039 3.1212 -3.6726 48 1 2.1826 1.5899 -4.5622 49 1 -0.2704 2.4401 -2.9570 50 1 -0.1360 2.4528 -4.7316 51 1 -0.0917 0.9087 -3.8466 52 1 0.6479 2.1956 -1.3157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246831074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:55 Heat of formation + Delta-G solvation = 20.113957 kcal Electronic energy + Delta-G solvation = -28575.423130 eV Core-core repulsion = 25152.927374 eV Total energy + Delta-G solvation = -3422.495757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86525 -39.93452 -37.43108 -35.38456 -33.98887 -33.30980 -31.65879 -31.63461 -30.69681 -29.98945 -27.34786 -26.19739 -24.31214 -24.18994 -23.28960 -22.64395 -22.18964 -21.24683 -19.63380 -18.48764 -17.65393 -17.28922 -17.05757 -16.51095 -16.22095 -16.01507 -15.67204 -15.24274 -15.01562 -14.82699 -14.57678 -14.24066 -14.22799 -14.17930 -14.06647 -13.95925 -13.44780 -13.39439 -13.28085 -12.92767 -12.83756 -12.66273 -12.36498 -12.28057 -12.18394 -12.00815 -11.90863 -11.85142 -11.70047 -11.60745 -11.48579 -11.43644 -11.22048 -10.86273 -10.54530 -9.69119 -9.50557 -9.13691 -8.68335 -8.15579 -5.50778 0.59173 0.63158 1.27689 1.38402 1.48109 2.42861 2.88750 3.18847 3.34081 3.43726 3.94880 3.97445 4.03148 4.14268 4.14986 4.19840 4.26054 4.26981 4.35793 4.37284 4.40190 4.43959 4.51655 4.63784 4.66004 4.70021 4.77026 4.80224 4.86897 4.89433 4.91365 4.97704 5.03958 5.13571 5.17970 5.20193 5.24009 5.26819 5.28362 5.29685 5.41201 5.44095 5.51717 5.57418 5.67809 5.69215 5.72394 5.93424 6.01089 6.25350 6.28770 6.30666 6.73299 7.04272 7.68937 8.10663 9.04489 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.005907 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.481855 B = 4738.901435 C = 6198.209073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.157 4.157 3 C 0.098 3.902 4 H 0.082 0.918 5 C -0.111 4.111 6 C 0.181 3.819 7 N -0.599 5.599 8 C -0.225 4.225 9 H 0.035 0.965 10 C -0.013 4.013 11 N -0.947 5.947 12 Si 0.926 3.074 13 H -0.281 1.281 14 H -0.313 1.313 15 H -0.254 1.254 16 C 0.164 3.836 17 C -0.096 4.096 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.104 4.104 24 C 0.099 3.901 25 H 0.052 0.948 26 C -0.117 4.117 27 C -0.145 4.145 28 N -0.683 5.683 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.259 0.741 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.126 0.874 44 H 0.084 0.916 45 H 0.030 0.970 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.060 0.940 52 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 -11.213 -6.146 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C -0.012 4.012 4 H 0.100 0.900 5 C -0.150 4.150 6 C 0.076 3.924 7 N -0.319 5.319 8 C -0.355 4.355 9 H 0.052 0.948 10 C -0.209 4.209 11 N -0.592 5.592 12 Si 0.756 3.244 13 H -0.209 1.209 14 H -0.242 1.242 15 H -0.178 1.178 16 C 0.040 3.960 17 C -0.099 4.099 18 C -0.137 4.137 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.011 4.011 25 H 0.069 0.931 26 C -0.155 4.155 27 C -0.202 4.202 28 N -0.317 5.317 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.148 0.852 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.901 -10.672 -6.045 19.300 hybrid contribution 0.777 -0.310 1.013 1.313 sum -14.125 -10.982 -5.032 18.586 Atomic orbital electron populations 1.21731 0.94213 1.02284 1.02028 1.22236 0.97300 0.97639 1.02428 1.21480 0.93955 0.93308 0.92472 0.90029 1.21849 0.94610 1.00448 0.98087 1.20575 0.81504 0.97072 0.93227 1.44268 1.01368 1.01195 1.85084 1.18320 1.08913 0.88720 1.19558 0.94766 1.25907 0.97222 0.97949 0.99832 1.70012 1.11996 1.37249 1.39896 0.86110 0.78446 0.78910 0.80925 1.20921 1.24182 1.17839 1.20296 0.95406 0.88660 0.91681 1.20751 0.94294 0.96137 0.98706 1.21127 0.99101 0.98423 0.95034 1.21407 0.97382 1.00260 0.94831 1.21359 0.94772 0.98175 1.00538 1.21298 1.00684 0.99233 0.93773 1.21035 0.97564 0.99269 0.96430 1.21849 0.94773 0.99813 0.97932 1.21403 0.93350 0.95806 0.90503 0.93080 1.21551 0.97325 1.00496 0.96161 1.21741 0.94225 1.02054 1.02179 1.60417 1.17317 1.52944 1.01067 0.92465 0.91882 0.92248 0.91721 0.91841 0.93486 0.94118 0.91407 0.93214 0.94618 0.91142 0.85201 0.83272 0.83578 0.85614 0.89783 0.95119 0.93416 0.93019 0.91845 0.92168 0.91981 0.92089 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.68 71.98 0.70 -1.70 16 2 C -0.16 -3.45 4.68 30.59 0.14 -3.31 16 3 C 0.10 2.70 3.12 44.94 0.14 2.84 16 4 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 5 C -0.11 -4.11 4.83 30.65 0.15 -3.96 16 6 C 0.18 6.84 2.40 45.07 0.11 6.95 16 7 N -0.60 -27.42 1.99 -681.92 -1.36 -28.78 16 8 C -0.22 -12.62 8.46 84.03 0.71 -11.91 16 9 H 0.03 2.21 7.16 -2.91 -0.02 2.19 16 10 C -0.01 -0.77 5.29 84.86 0.45 -0.32 16 11 N -0.95 -59.83 13.97 21.65 0.30 -59.53 16 12 Si 0.93 46.66 25.12 68.60 1.72 48.39 16 13 H -0.28 -13.78 6.66 99.48 0.66 -13.12 16 14 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 15 H -0.25 -12.07 7.11 99.48 0.71 -11.36 16 16 C 0.16 7.00 4.62 85.63 0.40 7.40 16 17 C -0.10 -3.79 5.46 -19.87 -0.11 -3.89 16 18 C -0.12 -3.71 9.70 22.27 0.22 -3.49 16 19 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 20 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 21 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 22 C -0.12 -5.17 9.70 22.27 0.22 -4.95 16 23 C -0.10 -3.77 4.73 30.65 0.14 -3.63 16 24 C 0.10 2.68 2.20 44.94 0.10 2.78 16 25 H 0.05 1.25 6.09 -2.39 -0.01 1.23 16 26 C -0.12 -2.81 5.61 30.59 0.17 -2.64 16 27 C -0.14 -2.51 9.69 71.98 0.70 -1.81 16 28 N -0.68 -18.14 6.24 -469.59 -2.93 -21.07 16 29 H 0.06 0.87 6.91 -2.39 -0.02 0.85 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 1.48 4.80 -2.39 -0.01 1.47 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 1.84 7.48 -2.39 -0.02 1.82 16 36 H 0.07 2.27 6.30 -2.39 -0.02 2.26 16 37 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 38 H 0.04 1.71 3.34 -2.38 -0.01 1.70 16 39 H 0.07 2.59 7.83 -2.39 -0.02 2.58 16 40 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 43 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 44 H 0.08 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.03 1.37 7.11 -2.38 -0.02 1.35 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 47 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.06 0.98 6.63 -2.39 -0.02 0.96 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.35 7.42 5.56 -89.69 -0.50 6.92 16 Total: -1.00 -67.29 387.74 2.98 -64.31 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.34 Total: 28.95 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 4.90 Total: -32.27 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -3.99 Total: -109.38 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.72 Total: 48.39 kcal Total: -67.29 2.98 -64.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246831074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.428 kcal (2) G-P(sol) polarization free energy of solvation -67.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds