Wall clock time and date at job start Tue Mar 31 2020 11:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46784 * 2 1 4 4 H 1.08997 * 109.45738 * 304.97434 * 3 2 1 5 5 C 1.53039 * 109.45945 * 184.99914 * 3 2 1 6 6 C 1.53121 * 109.27869 * 180.80753 * 5 3 2 7 7 H 1.09001 * 109.52190 * 297.69510 * 6 5 3 8 8 N 1.46497 * 109.52327 * 177.55996 * 6 5 3 9 9 C 1.36932 * 120.00320 * 304.66459 * 8 6 5 10 10 H 1.08005 * 119.99607 * 321.66990 * 9 8 6 11 11 C 1.38809 * 120.00048 * 141.66837 * 9 8 6 12 12 N 1.31610 * 120.00227 * 339.43342 * 11 9 8 13 13 Si 1.86801 * 119.99862 * 159.43316 * 11 9 8 14 14 H 1.48502 * 109.47277 * 59.99759 * 13 11 9 15 15 H 1.48501 * 109.47053 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47097 * 300.00055 * 13 11 9 17 17 C 1.46502 * 119.99588 * 124.66244 * 8 6 5 18 18 C 1.50708 * 109.47045 * 90.00234 * 17 8 6 19 19 C 1.38237 * 120.00041 * 89.99403 * 18 17 8 20 20 C 1.38236 * 119.99845 * 179.97438 * 19 18 17 21 21 C 1.38232 * 119.99887 * 359.97438 * 20 19 18 22 22 C 1.38235 * 120.00271 * 0.27822 * 21 20 19 23 23 C 1.38231 * 119.99737 * 269.98108 * 18 17 8 24 24 C 1.53123 * 109.20999 * 57.62536 * 6 5 3 25 25 C 1.53050 * 109.27313 * 302.44107 * 24 6 5 26 26 H 1.09003 * 109.40943 * 299.06638 * 25 24 6 27 27 C 1.53003 * 109.45993 * 179.13208 * 25 24 6 28 28 C 1.52998 * 109.47017 * 174.88084 * 27 25 24 29 29 N 1.46844 * 109.45726 * 64.95158 * 3 2 1 30 30 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47408 * 299.99587 * 1 2 3 32 32 H 1.08998 * 109.47453 * 59.99943 * 1 2 3 33 33 H 1.09006 * 109.46872 * 240.00688 * 2 1 3 34 34 H 1.08998 * 109.47453 * 120.00057 * 2 1 3 35 35 H 1.09001 * 109.50450 * 60.86681 * 5 3 2 36 36 H 1.09004 * 109.53780 * 300.77014 * 5 3 2 37 37 H 0.97003 * 120.00400 * 180.02562 * 12 11 9 38 38 H 1.08994 * 109.47666 * 330.00041 * 17 8 6 39 39 H 1.09000 * 109.47112 * 209.99504 * 17 8 6 40 40 H 1.08004 * 119.99802 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 180.02562 * 20 19 18 42 42 H 1.07997 * 119.99614 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00242 * 179.72398 * 22 21 20 44 44 H 1.07997 * 120.00401 * 359.97438 * 23 18 17 45 45 H 1.08991 * 109.50556 * 62.31762 * 24 6 5 46 46 H 1.08998 * 109.49975 * 182.43760 * 24 6 5 47 47 H 1.08994 * 109.46981 * 294.88386 * 27 25 24 48 48 H 1.09005 * 109.46614 * 54.88167 * 27 25 24 49 49 H 1.09002 * 109.46824 * 179.97438 * 28 27 25 50 50 H 1.09000 * 109.47207 * 300.00280 * 28 27 25 51 51 H 1.08999 * 109.46775 * 60.00161 * 28 27 25 52 52 H 1.00894 * 111.00388 * 305.84850 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6055 1.9812 -0.8421 5 6 3.5651 1.4442 -0.1257 6 6 4.0726 2.8887 -0.1050 7 1 3.6698 3.4286 -0.9620 8 7 5.5363 2.8944 -0.1665 9 6 6.2632 2.1945 0.7591 10 1 5.9408 2.1660 1.7896 11 6 7.4143 1.5216 0.3731 12 7 7.5996 1.2063 -0.8911 13 14 8.7003 1.0636 1.6482 14 1 8.0904 0.1745 2.6693 15 1 9.8256 0.3573 0.9847 16 1 9.2077 2.2955 2.3041 17 6 6.2223 3.6489 -1.2184 18 6 6.4884 5.0522 -0.7378 19 6 7.6679 5.3453 -0.0791 20 6 7.9122 6.6326 0.3612 21 6 6.9773 7.6270 0.1423 22 6 5.7956 7.3329 -0.5117 23 6 5.5532 6.0465 -0.9559 24 6 3.6121 3.5660 1.1888 25 6 2.0856 3.5014 1.2772 26 1 1.6509 4.0305 0.4290 27 6 1.6221 4.1580 2.5792 28 6 0.0933 4.2082 2.6090 29 7 1.6503 2.0991 1.2544 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8534 0.9706 -1.0642 36 1 4.0003 0.8936 0.7084 37 1 8.4039 0.7358 -1.1608 38 1 5.5952 3.6827 -2.1092 39 1 7.1674 3.1615 -1.4576 40 1 8.3985 4.5683 0.0915 41 1 8.8339 6.8616 0.8754 42 1 7.1684 8.6329 0.4860 43 1 5.0632 8.1089 -0.6787 44 1 4.6319 5.8177 -1.4711 45 1 4.0474 3.0500 2.0445 46 1 3.9339 4.6074 1.1888 47 1 1.9832 3.5769 3.4276 48 1 2.0202 5.1711 2.6368 49 1 -0.2369 4.6755 3.5367 50 1 -0.2678 4.7893 1.7604 51 1 -0.3047 3.1950 2.5512 52 1 0.6555 2.0269 1.4065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246831075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:28 Heat of formation + Delta-G solvation = 23.259397 kcal Electronic energy + Delta-G solvation = -28171.151489 eV Core-core repulsion = 24748.792128 eV Total energy + Delta-G solvation = -3422.359360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.05008 -38.38944 -35.56016 -34.57756 -32.29357 -31.45207 -30.45714 -30.19576 -28.71981 -28.57910 -25.52420 -24.71739 -23.08200 -22.67918 -21.82775 -20.58546 -20.20889 -19.71854 -19.14658 -16.50677 -16.05962 -15.79597 -15.46016 -14.94898 -14.45256 -14.22432 -14.16657 -14.02423 -13.50731 -13.43464 -13.08423 -13.06207 -12.79911 -12.74658 -12.63390 -12.40225 -11.97937 -11.84574 -11.37993 -11.32339 -11.14167 -10.98095 -10.92068 -10.82577 -10.74818 -10.68244 -10.56434 -10.42510 -10.28616 -10.23954 -9.96459 -9.72557 -9.66712 -9.36801 -8.45804 -8.25922 -8.01076 -7.93436 -6.53825 -5.78699 -3.35019 2.05982 2.09675 3.37422 3.43113 3.46417 4.41167 4.50216 4.54974 5.08058 5.14053 5.19894 5.26924 5.32713 5.34341 5.39276 5.47577 5.52586 5.62203 5.65208 5.73481 5.78288 5.79813 5.85512 5.94243 5.99199 6.06275 6.10409 6.16664 6.19061 6.25262 6.27501 6.28769 6.37512 6.41253 6.48047 6.51059 6.52882 6.61546 6.73797 6.81459 6.85904 6.93600 7.09894 7.18220 7.23469 7.39920 7.44100 7.59203 7.66666 7.76997 7.82322 7.87539 8.54655 9.19675 9.81473 10.40569 11.21540 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009734 B = 0.005516 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.771956 B = 5075.008027 C = 6790.416414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.091 3.909 4 H 0.025 0.975 5 C -0.107 4.107 6 C 0.180 3.820 7 H 0.038 0.962 8 N -0.568 5.568 9 C -0.245 4.245 10 H 0.059 0.941 11 C 0.015 3.985 12 N -0.886 5.886 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.174 3.826 18 C -0.068 4.068 19 C -0.099 4.099 20 C -0.128 4.128 21 C -0.145 4.145 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.117 4.117 25 C 0.093 3.907 26 H 0.026 0.974 27 C -0.118 4.118 28 C -0.152 4.152 29 N -0.677 5.677 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.031 0.969 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.051 0.949 50 H 0.048 0.952 51 H 0.053 0.947 52 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 5.798 1.188 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.019 4.019 4 H 0.043 0.957 5 C -0.146 4.146 6 C 0.073 3.927 7 H 0.056 0.944 8 N -0.285 5.285 9 C -0.375 4.375 10 H 0.077 0.923 11 C -0.185 4.185 12 N -0.528 5.528 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.217 1.217 16 H -0.209 1.209 17 C 0.048 3.952 18 C -0.071 4.071 19 C -0.118 4.118 20 C -0.146 4.146 21 C -0.164 4.164 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.156 4.156 25 C -0.017 4.017 26 H 0.044 0.956 27 C -0.156 4.156 28 C -0.210 4.210 29 N -0.311 5.311 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.067 0.933 51 H 0.072 0.928 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.918 5.424 1.416 11.393 hybrid contribution 0.077 0.264 0.152 0.314 sum -9.841 5.688 1.569 11.474 Atomic orbital electron populations 1.21804 0.96819 1.01233 1.01105 1.21577 0.94720 0.96703 1.02560 1.21558 0.97469 0.93476 0.89414 0.95685 1.21917 0.90829 0.99314 1.02582 1.20379 0.85167 0.93276 0.93880 0.94379 1.43722 0.98748 1.52719 1.33325 1.18854 1.05614 1.23760 0.89225 0.92308 1.25119 1.00813 0.96961 0.95612 1.69966 1.27047 1.40277 1.15498 0.86589 0.81663 0.78348 0.81567 1.20695 1.21691 1.20882 1.20052 1.00624 0.85258 0.89239 1.21265 0.92462 0.97857 0.95476 1.21105 0.97682 0.95561 0.97417 1.21077 0.98993 0.93791 1.00714 1.20866 0.95131 0.98506 1.01866 1.20954 0.97167 0.96579 1.00068 1.20989 0.98989 0.92919 1.01247 1.22059 0.91805 1.00359 1.01421 1.21483 0.96964 0.87749 0.95495 0.95613 1.21582 0.95054 1.00488 0.98464 1.21799 0.96722 1.01323 1.01121 1.60415 1.19407 1.15102 1.36184 0.93006 0.92863 0.93358 0.91721 0.91087 0.92313 0.90474 0.93538 0.95074 0.88003 0.86381 0.87304 0.87493 0.87491 0.87434 0.91135 0.92752 0.91154 0.91897 0.93001 0.93311 0.92759 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.69 37.16 0.36 -1.33 16 2 C -0.12 -1.62 5.61 -26.73 -0.15 -1.77 16 3 C 0.09 1.42 2.50 -67.72 -0.17 1.25 16 4 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 5 C -0.11 -2.09 4.60 -26.65 -0.12 -2.21 16 6 C 0.18 3.62 2.70 -67.81 -0.18 3.44 16 7 H 0.04 0.76 7.77 -51.93 -0.40 0.35 16 8 N -0.57 -13.12 2.35 -166.88 -0.39 -13.51 16 9 C -0.24 -6.27 8.03 -15.06 -0.12 -6.39 16 10 H 0.06 1.57 7.00 -52.48 -0.37 1.20 16 11 C 0.02 0.40 4.97 -17.44 -0.09 0.31 16 12 N -0.89 -24.18 11.47 55.49 0.64 -23.54 16 13 Si 0.89 21.08 29.60 -169.99 -5.03 16.05 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.17 3.93 5.40 -5.19 -0.03 3.90 16 18 C -0.07 -1.37 5.46 -104.62 -0.57 -1.95 16 19 C -0.10 -1.99 9.70 -39.58 -0.38 -2.38 16 20 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 21 C -0.15 -2.32 10.05 -39.58 -0.40 -2.72 16 22 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 23 C -0.12 -2.21 9.70 -39.58 -0.38 -2.59 16 24 C -0.12 -2.16 4.73 -26.64 -0.13 -2.28 16 25 C 0.09 1.41 2.50 -67.71 -0.17 1.24 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 27 C -0.12 -1.55 5.61 -26.73 -0.15 -1.70 16 28 C -0.15 -1.63 9.69 37.16 0.36 -1.27 16 29 N -0.68 -10.01 6.16 -99.76 -0.61 -10.62 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.56 6.63 -51.93 -0.34 0.22 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.72 7.49 -51.93 -0.39 1.33 16 37 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 38 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 39 H 0.10 2.59 5.48 -51.93 -0.28 2.31 16 40 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.07 1.47 7.09 -51.93 -0.37 1.11 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.05 0.56 6.63 -51.93 -0.34 0.21 16 52 H 0.33 4.24 5.11 -39.29 -0.20 4.04 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -26.34 399.26 -11.93 -38.28 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -9.43 Total: 8.89 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -3.12 Total: -21.55 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.37 Total: -47.67 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -26.34 -11.93 -38.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246831075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.536 kcal (2) G-P(sol) polarization free energy of solvation -26.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds