Wall clock time and date at job start Tue Mar 31 2020 11:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46784 * 2 1 4 4 H 1.08997 * 109.45738 * 304.97434 * 3 2 1 5 5 C 1.53039 * 109.45945 * 184.99914 * 3 2 1 6 6 C 1.53121 * 109.27869 * 180.80753 * 5 3 2 7 7 H 1.09001 * 109.52190 * 297.69510 * 6 5 3 8 8 N 1.46497 * 109.52327 * 177.55996 * 6 5 3 9 9 C 1.36932 * 120.00320 * 304.66459 * 8 6 5 10 10 H 1.08005 * 119.99607 * 321.66990 * 9 8 6 11 11 C 1.38809 * 120.00048 * 141.66837 * 9 8 6 12 12 N 1.31610 * 120.00227 * 339.43342 * 11 9 8 13 13 Si 1.86801 * 119.99862 * 159.43316 * 11 9 8 14 14 H 1.48502 * 109.47277 * 59.99759 * 13 11 9 15 15 H 1.48501 * 109.47053 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47097 * 300.00055 * 13 11 9 17 17 C 1.46502 * 119.99588 * 124.66244 * 8 6 5 18 18 C 1.50708 * 109.47045 * 90.00234 * 17 8 6 19 19 C 1.38237 * 120.00041 * 89.99403 * 18 17 8 20 20 C 1.38236 * 119.99845 * 179.97438 * 19 18 17 21 21 C 1.38232 * 119.99887 * 359.97438 * 20 19 18 22 22 C 1.38235 * 120.00271 * 0.27822 * 21 20 19 23 23 C 1.38231 * 119.99737 * 269.98108 * 18 17 8 24 24 C 1.53123 * 109.20999 * 57.62536 * 6 5 3 25 25 C 1.53050 * 109.27313 * 302.44107 * 24 6 5 26 26 H 1.09003 * 109.40943 * 299.06638 * 25 24 6 27 27 C 1.53003 * 109.45993 * 179.13208 * 25 24 6 28 28 C 1.52998 * 109.47017 * 174.88084 * 27 25 24 29 29 N 1.46844 * 109.45726 * 64.95158 * 3 2 1 30 30 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47408 * 299.99587 * 1 2 3 32 32 H 1.08998 * 109.47453 * 59.99943 * 1 2 3 33 33 H 1.09006 * 109.46872 * 240.00688 * 2 1 3 34 34 H 1.08998 * 109.47453 * 120.00057 * 2 1 3 35 35 H 1.09001 * 109.50450 * 60.86681 * 5 3 2 36 36 H 1.09004 * 109.53780 * 300.77014 * 5 3 2 37 37 H 0.97003 * 120.00400 * 180.02562 * 12 11 9 38 38 H 1.08994 * 109.47666 * 330.00041 * 17 8 6 39 39 H 1.09000 * 109.47112 * 209.99504 * 17 8 6 40 40 H 1.08004 * 119.99802 * 359.97438 * 19 18 17 41 41 H 1.07999 * 119.99770 * 180.02562 * 20 19 18 42 42 H 1.07997 * 119.99614 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00242 * 179.72398 * 22 21 20 44 44 H 1.07997 * 120.00401 * 359.97438 * 23 18 17 45 45 H 1.08991 * 109.50556 * 62.31762 * 24 6 5 46 46 H 1.08998 * 109.49975 * 182.43760 * 24 6 5 47 47 H 1.08994 * 109.46981 * 294.88386 * 27 25 24 48 48 H 1.09005 * 109.46614 * 54.88167 * 27 25 24 49 49 H 1.09002 * 109.46824 * 179.97438 * 28 27 25 50 50 H 1.09000 * 109.47207 * 300.00280 * 28 27 25 51 51 H 1.08999 * 109.46775 * 60.00161 * 28 27 25 52 52 H 1.00894 * 111.00388 * 305.84850 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6055 1.9812 -0.8421 5 6 3.5651 1.4442 -0.1257 6 6 4.0726 2.8887 -0.1050 7 1 3.6698 3.4286 -0.9620 8 7 5.5363 2.8944 -0.1665 9 6 6.2632 2.1945 0.7591 10 1 5.9408 2.1660 1.7896 11 6 7.4143 1.5216 0.3731 12 7 7.5996 1.2063 -0.8911 13 14 8.7003 1.0636 1.6482 14 1 8.0904 0.1745 2.6693 15 1 9.8256 0.3573 0.9847 16 1 9.2077 2.2955 2.3041 17 6 6.2223 3.6489 -1.2184 18 6 6.4884 5.0522 -0.7378 19 6 7.6679 5.3453 -0.0791 20 6 7.9122 6.6326 0.3612 21 6 6.9773 7.6270 0.1423 22 6 5.7956 7.3329 -0.5117 23 6 5.5532 6.0465 -0.9559 24 6 3.6121 3.5660 1.1888 25 6 2.0856 3.5014 1.2772 26 1 1.6509 4.0305 0.4290 27 6 1.6221 4.1580 2.5792 28 6 0.0933 4.2082 2.6090 29 7 1.6503 2.0991 1.2544 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8534 0.9706 -1.0642 36 1 4.0003 0.8936 0.7084 37 1 8.4039 0.7358 -1.1608 38 1 5.5952 3.6827 -2.1092 39 1 7.1674 3.1615 -1.4576 40 1 8.3985 4.5683 0.0915 41 1 8.8339 6.8616 0.8754 42 1 7.1684 8.6329 0.4860 43 1 5.0632 8.1089 -0.6787 44 1 4.6319 5.8177 -1.4711 45 1 4.0474 3.0500 2.0445 46 1 3.9339 4.6074 1.1888 47 1 1.9832 3.5769 3.4276 48 1 2.0202 5.1711 2.6368 49 1 -0.2369 4.6755 3.5367 50 1 -0.2678 4.7893 1.7604 51 1 -0.3047 3.1950 2.5512 52 1 0.6555 2.0269 1.4065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246831075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:26 Heat of formation + Delta-G solvation = 11.947216 kcal Electronic energy + Delta-G solvation = -28171.642021 eV Core-core repulsion = 24748.792128 eV Total energy + Delta-G solvation = -3422.849893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49846 -39.78784 -37.22514 -35.71618 -33.96074 -33.09129 -31.67833 -31.60446 -30.32092 -29.82969 -27.36771 -26.09649 -24.33679 -24.18213 -23.24662 -21.99680 -21.39963 -21.30793 -20.65300 -18.29482 -17.42473 -17.24022 -16.79634 -16.63853 -15.93195 -15.91552 -15.68353 -15.24631 -15.09899 -14.80233 -14.28362 -14.21998 -14.15538 -14.07497 -13.87599 -13.70502 -13.47763 -13.26200 -12.99100 -12.80699 -12.64404 -12.52108 -12.37309 -12.33173 -12.21535 -12.15090 -11.85545 -11.77990 -11.74649 -11.63397 -11.53742 -11.41919 -11.15825 -10.94041 -10.45519 -9.66312 -9.42949 -9.21822 -8.48228 -7.79155 -5.39325 0.65048 0.67648 1.42063 1.44370 1.50028 2.50329 3.02569 3.26733 3.29642 3.68008 3.93799 4.04942 4.12966 4.19788 4.20337 4.24882 4.32481 4.34715 4.35391 4.38985 4.44109 4.59844 4.62399 4.66516 4.69518 4.72492 4.82543 4.84824 4.89965 4.96755 5.03461 5.06815 5.17214 5.18728 5.23337 5.24846 5.26340 5.31211 5.33053 5.38350 5.46227 5.54132 5.58778 5.61568 5.72018 5.72970 5.74809 5.80801 6.07269 6.28091 6.31170 6.53442 6.71170 7.21116 7.89608 8.43429 9.16483 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009734 B = 0.005516 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.771956 B = 5075.008027 C = 6790.416414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.101 3.899 4 H 0.034 0.966 5 C -0.097 4.097 6 C 0.177 3.823 7 H 0.043 0.957 8 N -0.578 5.578 9 C -0.238 4.238 10 H 0.044 0.956 11 C -0.026 4.026 12 N -0.913 5.913 13 Si 0.937 3.063 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.282 1.282 17 C 0.180 3.820 18 C -0.087 4.087 19 C -0.125 4.125 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.101 4.101 25 C 0.100 3.900 26 H 0.036 0.964 27 C -0.113 4.113 28 C -0.146 4.146 29 N -0.680 5.680 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.250 0.750 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.117 0.883 45 H 0.039 0.961 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.056 0.944 51 H 0.059 0.941 52 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 8.350 1.970 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.010 4.010 4 H 0.052 0.948 5 C -0.136 4.136 6 C 0.070 3.930 7 H 0.061 0.939 8 N -0.297 5.297 9 C -0.369 4.369 10 H 0.061 0.939 11 C -0.223 4.223 12 N -0.557 5.557 13 Si 0.766 3.234 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.054 3.946 18 C -0.090 4.090 19 C -0.144 4.144 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.011 4.011 26 H 0.053 0.947 27 C -0.151 4.151 28 C -0.203 4.203 29 N -0.316 5.316 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.148 0.852 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.135 0.865 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.541 7.990 2.212 15.034 hybrid contribution 0.895 -0.438 -0.110 1.002 sum -11.646 7.552 2.101 14.039 Atomic orbital electron populations 1.21741 0.94025 1.02442 1.01962 1.21529 0.97088 0.94979 1.01728 1.21391 0.94235 0.95130 0.90215 0.94788 1.21748 0.94075 0.98145 0.99659 1.20528 0.83568 0.93843 0.95020 0.93858 1.43866 0.99983 1.53051 1.32792 1.18813 1.05829 1.23195 0.89025 0.93880 1.25598 1.02280 0.97616 0.96836 1.70078 1.27185 1.41657 1.16746 0.85816 0.79840 0.77889 0.79820 1.20600 1.21810 1.20813 1.19815 0.98818 0.86731 0.89202 1.20982 0.93777 0.97126 0.97093 1.21014 0.97493 0.96543 0.99394 1.21323 1.00399 0.92784 1.00284 1.21320 0.94135 0.99713 1.00191 1.21367 0.97878 0.96299 0.98348 1.21101 0.98660 0.93380 1.01435 1.21845 0.94510 0.98964 0.98805 1.21402 0.94184 0.88252 0.97226 0.94662 1.21524 0.97143 1.00000 0.96477 1.21750 0.94285 1.02041 1.02266 1.60301 1.20783 1.14914 1.35625 0.91725 0.91925 0.92484 0.92245 0.92388 0.94767 0.93965 0.94112 0.95169 0.91406 0.89345 0.85226 0.83597 0.83737 0.86503 0.94215 0.93431 0.92370 0.91681 0.91660 0.92452 0.92208 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.69 71.98 0.70 -2.13 16 2 C -0.12 -3.10 5.61 30.60 0.17 -2.92 16 3 C 0.10 3.10 2.50 44.94 0.11 3.21 16 4 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 5 C -0.10 -3.96 4.60 30.65 0.14 -3.82 16 6 C 0.18 7.36 2.70 45.07 0.12 7.48 16 7 H 0.04 1.75 7.77 -2.39 -0.02 1.73 16 8 N -0.58 -28.24 2.35 -681.88 -1.60 -29.85 16 9 C -0.24 -12.92 8.03 84.03 0.67 -12.25 16 10 H 0.04 2.45 7.00 -2.91 -0.02 2.43 16 11 C -0.03 -1.43 4.97 84.86 0.42 -1.01 16 12 N -0.91 -52.86 11.47 21.65 0.25 -52.61 16 13 Si 0.94 45.37 29.60 68.60 2.03 47.40 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 C 0.18 8.60 5.40 85.64 0.46 9.06 16 18 C -0.09 -3.64 5.46 -19.86 -0.11 -3.74 16 19 C -0.13 -5.21 9.70 22.27 0.22 -4.99 16 20 C -0.13 -4.35 10.05 22.27 0.22 -4.12 16 21 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 22 C -0.12 -3.48 10.05 22.27 0.22 -3.25 16 23 C -0.13 -4.41 9.70 22.27 0.22 -4.19 16 24 C -0.10 -3.81 4.73 30.65 0.14 -3.66 16 25 C 0.10 2.87 2.50 44.94 0.11 2.99 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 C -0.11 -2.74 5.61 30.59 0.17 -2.57 16 28 C -0.15 -2.62 9.69 71.98 0.70 -1.93 16 29 N -0.68 -19.22 6.16 -469.54 -2.89 -22.11 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.11 6.63 -2.39 -0.02 1.10 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 2.00 7.49 -2.38 -0.02 1.98 16 37 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 38 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 39 H 0.07 3.72 5.48 -2.39 -0.01 3.71 16 40 H 0.09 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 44 H 0.12 3.77 8.06 -2.91 -0.02 3.74 16 45 H 0.04 1.72 7.09 -2.39 -0.02 1.70 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 50 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.06 1.01 6.63 -2.39 -0.02 0.99 16 52 H 0.35 7.96 5.11 -89.70 -0.46 7.50 16 Total: -1.00 -61.37 399.26 3.11 -58.26 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.40 Total: 30.38 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 4.92 Total: -31.48 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -4.25 Total: -104.57 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -61.37 3.11 -58.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246831075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.205 kcal (2) G-P(sol) polarization free energy of solvation -61.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds