Wall clock time and date at job start Tue Mar 31 2020 11:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.53004 * 109.46852 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46636 * 184.20066 * 4 3 2 6 6 H 1.09002 * 109.46240 * 295.27211 * 5 4 3 7 7 C 1.53035 * 109.45040 * 175.30682 * 5 4 3 8 8 C 1.53120 * 109.27518 * 180.80851 * 7 5 4 9 9 H 1.09008 * 109.57225 * 177.58789 * 8 7 5 10 10 N 1.46494 * 109.52299 * 297.74351 * 8 7 5 11 11 C 1.36940 * 120.00435 * 311.57308 * 10 8 7 12 12 H 1.07991 * 120.00259 * 140.97349 * 11 10 8 13 13 C 1.38814 * 119.99479 * 320.97472 * 11 10 8 14 14 N 1.31618 * 120.00076 * 342.95397 * 13 11 10 15 15 Si 1.86801 * 119.99606 * 162.95437 * 13 11 10 16 16 H 1.48487 * 109.47259 * 5.00214 * 15 13 11 17 17 H 1.48503 * 109.46997 * 124.99992 * 15 13 11 18 18 H 1.48495 * 109.46975 * 244.99720 * 15 13 11 19 19 C 1.46511 * 120.00013 * 131.57190 * 10 8 7 20 20 C 1.50694 * 109.47048 * 96.81181 * 19 10 8 21 21 C 1.38238 * 120.00218 * 83.32929 * 20 19 10 22 22 C 1.38227 * 119.99989 * 179.72455 * 21 20 19 23 23 C 1.38234 * 120.00512 * 0.25620 * 22 21 20 24 24 C 1.38237 * 119.99612 * 0.02562 * 23 22 21 25 25 C 1.38230 * 120.00274 * 359.95559 * 24 23 22 26 26 C 1.53120 * 109.16315 * 57.65170 * 8 7 5 27 27 C 1.53038 * 109.27581 * 302.34594 * 26 8 7 28 28 N 1.46839 * 109.52401 * 59.18061 * 27 26 8 29 29 H 1.08994 * 109.47408 * 59.99642 * 1 2 3 30 30 H 1.08994 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46926 * 299.99783 * 1 2 3 32 32 H 1.09006 * 109.47082 * 239.99703 * 2 1 3 33 33 H 1.09005 * 109.47455 * 119.99921 * 2 1 3 34 34 H 1.08992 * 109.47280 * 60.00061 * 3 2 1 35 35 H 1.09005 * 109.46864 * 300.00283 * 3 2 1 36 36 H 1.08996 * 109.46946 * 64.20110 * 4 3 2 37 37 H 1.08996 * 109.47157 * 304.19381 * 4 3 2 38 38 H 1.08999 * 109.50746 * 60.86381 * 7 5 4 39 39 H 1.08999 * 109.50217 * 300.74714 * 7 5 4 40 40 H 0.97002 * 119.99760 * 185.02375 * 14 13 11 41 41 H 1.09000 * 109.46639 * 336.80891 * 19 10 8 42 42 H 1.08997 * 109.46812 * 216.81353 * 19 10 8 43 43 H 1.07998 * 119.99603 * 359.97438 * 21 20 19 44 44 H 1.08006 * 120.00092 * 180.27546 * 22 21 20 45 45 H 1.08006 * 120.00412 * 180.02562 * 23 22 21 46 46 H 1.08003 * 120.00133 * 179.97438 * 24 23 22 47 47 H 1.07995 * 120.00471 * 180.02562 * 25 24 23 48 48 H 1.09003 * 109.50231 * 62.28551 * 26 8 7 49 49 H 1.08999 * 109.50590 * 182.40264 * 26 8 7 50 50 H 1.09003 * 109.45796 * 179.19802 * 27 26 8 51 51 H 1.08999 * 109.46118 * 299.15826 * 27 26 8 52 52 H 1.00895 * 111.00682 * 62.35357 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8811 0.1050 6 1 3.7871 3.4367 -0.7859 7 6 5.6059 2.8735 0.2222 8 6 6.1103 4.3138 0.3480 9 1 7.1930 4.3117 0.4748 10 7 5.7605 5.0624 -0.8616 11 6 6.0259 4.5320 -2.0959 12 1 5.3183 4.6589 -2.9017 13 6 7.2047 3.8313 -2.3113 14 7 8.2062 3.9525 -1.4659 15 14 7.3694 2.7162 -3.8009 16 1 6.1603 2.8466 -4.6530 17 1 8.5701 3.1079 -4.5821 18 1 7.5090 1.3077 -3.3518 19 6 5.1267 6.3787 -0.7509 20 6 6.1764 7.4533 -0.8702 21 6 6.5982 7.8720 -2.1183 22 6 7.5569 8.8617 -2.2278 23 6 8.0977 9.4292 -1.0893 24 6 7.6802 9.0064 0.1589 25 6 6.7212 8.0169 0.2685 26 6 5.4539 4.9718 1.5648 27 6 3.9324 4.9184 1.4086 28 7 3.4997 3.5200 1.2930 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.9329 0.9953 -0.9261 37 1 3.9337 0.8648 0.8491 38 1 6.0370 2.4133 -0.6668 39 1 5.9002 2.3064 1.1053 40 1 9.0545 3.5212 -1.6540 41 1 4.6293 6.4622 0.2154 42 1 4.3932 6.4969 -1.5484 43 1 6.1757 7.4285 -3.0079 44 1 7.8832 9.1919 -3.2030 45 1 8.8465 10.2028 -1.1748 46 1 8.1030 9.4494 1.0485 47 1 6.3946 7.6869 1.2435 48 1 5.7458 4.4377 2.4691 49 1 5.7763 6.0106 1.6350 50 1 3.4618 5.3735 2.2801 51 1 3.6401 5.4645 0.5117 52 1 3.7248 3.0015 2.1287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246835889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:57 Heat of formation + Delta-G solvation = 37.694165 kcal Electronic energy + Delta-G solvation = -28248.920910 eV Core-core repulsion = 24827.187488 eV Total energy + Delta-G solvation = -3421.733422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.29115 -38.15559 -35.76727 -34.28647 -32.40176 -31.32364 -30.60638 -30.15030 -28.81563 -28.18763 -25.48051 -24.15344 -23.19304 -22.02404 -21.79287 -20.93200 -20.45796 -19.89391 -18.99670 -16.57117 -16.13683 -15.46587 -15.10478 -14.86134 -14.43606 -14.36010 -14.09276 -14.05461 -13.75458 -13.49951 -13.39720 -12.75826 -12.62964 -12.53959 -12.49672 -12.00861 -11.95235 -11.65761 -11.56118 -11.20838 -11.12071 -10.95003 -10.93692 -10.74116 -10.69948 -10.51545 -10.45606 -10.25534 -10.15381 -10.05124 -10.02239 -9.93397 -9.59095 -9.20792 -8.57294 -8.16327 -7.91234 -7.64431 -6.50206 -5.74513 -3.35958 2.14588 2.18125 3.30950 3.41142 3.42163 4.41515 4.58295 4.86100 5.03329 5.16514 5.32450 5.33545 5.39816 5.50678 5.56777 5.62019 5.66387 5.70042 5.72567 5.82768 5.85599 5.92453 5.95908 5.97765 6.06010 6.15296 6.17662 6.20426 6.25323 6.33852 6.36437 6.38414 6.40100 6.46743 6.60227 6.61217 6.67055 6.72433 6.81259 6.82540 6.84608 6.93929 7.08719 7.17970 7.23479 7.27748 7.54631 7.68837 7.75763 7.79835 7.86035 8.01092 8.49189 9.19654 9.79396 10.39764 11.22154 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.004627 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.153825 B = 6049.500924 C = 7353.524567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.111 4.111 5 C 0.096 3.904 6 H 0.092 0.908 7 C -0.139 4.139 8 C 0.190 3.810 9 H 0.069 0.931 10 N -0.565 5.565 11 C -0.256 4.256 12 H 0.059 0.941 13 C 0.026 3.974 14 N -0.882 5.882 15 Si 0.885 3.115 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.288 1.288 19 C 0.156 3.844 20 C -0.068 4.068 21 C -0.093 4.093 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.172 4.172 27 C 0.050 3.950 28 N -0.679 5.679 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.253 0.747 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.051 0.949 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.090 0.910 52 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 0.950 5.189 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.147 4.147 4 C -0.149 4.149 5 C -0.014 4.014 6 H 0.110 0.890 7 C -0.179 4.179 8 C 0.085 3.915 9 H 0.086 0.914 10 N -0.286 5.286 11 C -0.386 4.386 12 H 0.077 0.923 13 C -0.175 4.175 14 N -0.523 5.523 15 Si 0.714 3.286 16 H -0.200 1.200 17 H -0.218 1.218 18 H -0.215 1.215 19 C 0.031 3.969 20 C -0.071 4.071 21 C -0.111 4.111 22 C -0.144 4.144 23 C -0.162 4.162 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.211 4.211 27 C -0.079 4.079 28 N -0.306 5.306 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.108 0.892 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.623 0.928 4.913 9.967 hybrid contribution 1.778 -0.786 -0.594 2.033 sum -6.845 0.142 4.319 8.095 Atomic orbital electron populations 1.21759 0.96456 1.00836 1.01691 1.21590 0.95345 0.98201 1.01329 1.21490 0.95506 0.95004 1.02650 1.21637 0.95388 0.96802 1.01052 1.21483 0.92635 0.93438 0.93809 0.89035 1.22301 0.95785 0.98943 1.00905 1.20319 0.98707 0.88765 0.83738 0.91375 1.43866 1.70971 1.11595 1.02161 1.18859 1.00415 1.29963 0.89354 0.92350 1.25258 0.95075 1.00531 0.96666 1.69916 1.01652 1.44475 1.36238 0.86510 0.77727 0.81062 0.83292 1.19994 1.21761 1.21459 1.20506 0.92200 0.84348 0.99885 1.21030 0.99387 0.94295 0.92384 1.20948 0.97036 0.95459 0.97705 1.21019 0.97869 0.97911 0.97627 1.20846 1.01044 1.01318 0.92996 1.20921 0.98425 0.98594 0.96772 1.20930 0.97980 0.97103 0.97928 1.22667 0.97660 1.01503 0.99297 1.22342 0.93072 0.90638 1.01861 1.60851 1.61541 1.02727 1.05526 0.92929 0.93459 0.92879 0.92642 0.92610 0.90782 0.92616 0.92200 0.93212 0.90492 0.94871 0.93669 0.91174 0.93830 0.86642 0.87448 0.87594 0.87539 0.87333 0.93047 0.91890 0.92687 0.89187 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.13 -1.49 5.93 -26.73 -0.16 -1.65 16 3 C -0.11 -1.47 5.08 -26.73 -0.14 -1.60 16 4 C -0.11 -1.69 4.91 -26.73 -0.13 -1.82 16 5 C 0.10 1.66 2.38 -67.72 -0.16 1.50 16 6 H 0.09 1.85 7.42 -51.93 -0.39 1.46 16 7 C -0.14 -2.79 4.53 -26.65 -0.12 -2.91 16 8 C 0.19 4.03 2.57 -67.81 -0.17 3.86 16 9 H 0.07 1.76 6.51 -51.92 -0.34 1.43 16 10 N -0.57 -12.45 1.94 -166.88 -0.32 -12.77 16 11 C -0.26 -6.34 8.24 -15.06 -0.12 -6.47 16 12 H 0.06 1.49 7.89 -52.49 -0.41 1.08 16 13 C 0.03 0.68 3.82 -17.43 -0.07 0.62 16 14 N -0.88 -24.23 11.50 55.49 0.64 -23.59 16 15 Si 0.88 20.86 29.59 -169.99 -5.03 15.83 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 C 0.16 3.05 4.21 -5.19 -0.02 3.03 16 20 C -0.07 -1.35 5.41 -104.62 -0.57 -1.91 16 21 C -0.09 -1.85 9.67 -39.59 -0.38 -2.24 16 22 C -0.13 -2.29 10.05 -39.59 -0.40 -2.69 16 23 C -0.14 -2.45 10.05 -39.58 -0.40 -2.85 16 24 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 25 C -0.12 -2.23 9.42 -39.58 -0.37 -2.60 16 26 C -0.17 -2.97 5.04 -26.65 -0.13 -3.10 16 27 C 0.05 0.78 5.81 -3.84 -0.02 0.76 16 28 N -0.68 -10.39 5.46 -106.76 -0.58 -10.97 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.01 7.34 -51.93 -0.38 0.63 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.80 6.31 -51.93 -0.33 1.47 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.07 1.23 3.45 -51.93 -0.18 1.05 16 42 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 43 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 46 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 47 H 0.11 1.85 6.12 -52.49 -0.32 1.52 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 1.09 4.81 -51.93 -0.25 0.84 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.09 1.52 5.00 -51.93 -0.26 1.26 16 52 H 0.32 4.66 8.79 -39.29 -0.35 4.31 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -26.34 388.68 -11.93 -38.28 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -9.10 Total: 11.26 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -3.40 Total: -23.90 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.27 Total: -47.32 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -26.34 -11.93 -38.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246835889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.974 kcal (2) G-P(sol) polarization free energy of solvation -26.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds