Wall clock time and date at job start Tue Mar 31 2020 11:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.53004 * 109.46852 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46636 * 184.20066 * 4 3 2 6 6 H 1.09002 * 109.46240 * 295.27211 * 5 4 3 7 7 C 1.53035 * 109.45040 * 175.30682 * 5 4 3 8 8 C 1.53120 * 109.27518 * 180.80851 * 7 5 4 9 9 H 1.09008 * 109.57225 * 177.58789 * 8 7 5 10 10 N 1.46494 * 109.52299 * 297.74351 * 8 7 5 11 11 C 1.36940 * 120.00435 * 311.57308 * 10 8 7 12 12 H 1.07991 * 120.00259 * 140.97349 * 11 10 8 13 13 C 1.38814 * 119.99479 * 320.97472 * 11 10 8 14 14 N 1.31618 * 120.00076 * 342.95397 * 13 11 10 15 15 Si 1.86801 * 119.99606 * 162.95437 * 13 11 10 16 16 H 1.48487 * 109.47259 * 5.00214 * 15 13 11 17 17 H 1.48503 * 109.46997 * 124.99992 * 15 13 11 18 18 H 1.48495 * 109.46975 * 244.99720 * 15 13 11 19 19 C 1.46511 * 120.00013 * 131.57190 * 10 8 7 20 20 C 1.50694 * 109.47048 * 96.81181 * 19 10 8 21 21 C 1.38238 * 120.00218 * 83.32929 * 20 19 10 22 22 C 1.38227 * 119.99989 * 179.72455 * 21 20 19 23 23 C 1.38234 * 120.00512 * 0.25620 * 22 21 20 24 24 C 1.38237 * 119.99612 * 0.02562 * 23 22 21 25 25 C 1.38230 * 120.00274 * 359.95559 * 24 23 22 26 26 C 1.53120 * 109.16315 * 57.65170 * 8 7 5 27 27 C 1.53038 * 109.27581 * 302.34594 * 26 8 7 28 28 N 1.46839 * 109.52401 * 59.18061 * 27 26 8 29 29 H 1.08994 * 109.47408 * 59.99642 * 1 2 3 30 30 H 1.08994 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46926 * 299.99783 * 1 2 3 32 32 H 1.09006 * 109.47082 * 239.99703 * 2 1 3 33 33 H 1.09005 * 109.47455 * 119.99921 * 2 1 3 34 34 H 1.08992 * 109.47280 * 60.00061 * 3 2 1 35 35 H 1.09005 * 109.46864 * 300.00283 * 3 2 1 36 36 H 1.08996 * 109.46946 * 64.20110 * 4 3 2 37 37 H 1.08996 * 109.47157 * 304.19381 * 4 3 2 38 38 H 1.08999 * 109.50746 * 60.86381 * 7 5 4 39 39 H 1.08999 * 109.50217 * 300.74714 * 7 5 4 40 40 H 0.97002 * 119.99760 * 185.02375 * 14 13 11 41 41 H 1.09000 * 109.46639 * 336.80891 * 19 10 8 42 42 H 1.08997 * 109.46812 * 216.81353 * 19 10 8 43 43 H 1.07998 * 119.99603 * 359.97438 * 21 20 19 44 44 H 1.08006 * 120.00092 * 180.27546 * 22 21 20 45 45 H 1.08006 * 120.00412 * 180.02562 * 23 22 21 46 46 H 1.08003 * 120.00133 * 179.97438 * 24 23 22 47 47 H 1.07995 * 120.00471 * 180.02562 * 25 24 23 48 48 H 1.09003 * 109.50231 * 62.28551 * 26 8 7 49 49 H 1.08999 * 109.50590 * 182.40264 * 26 8 7 50 50 H 1.09003 * 109.45796 * 179.19802 * 27 26 8 51 51 H 1.08999 * 109.46118 * 299.15826 * 27 26 8 52 52 H 1.00895 * 111.00682 * 62.35357 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8811 0.1050 6 1 3.7871 3.4367 -0.7859 7 6 5.6059 2.8735 0.2222 8 6 6.1103 4.3138 0.3480 9 1 7.1930 4.3117 0.4748 10 7 5.7605 5.0624 -0.8616 11 6 6.0259 4.5320 -2.0959 12 1 5.3183 4.6589 -2.9017 13 6 7.2047 3.8313 -2.3113 14 7 8.2062 3.9525 -1.4659 15 14 7.3694 2.7162 -3.8009 16 1 6.1603 2.8466 -4.6530 17 1 8.5701 3.1079 -4.5821 18 1 7.5090 1.3077 -3.3518 19 6 5.1267 6.3787 -0.7509 20 6 6.1764 7.4533 -0.8702 21 6 6.5982 7.8720 -2.1183 22 6 7.5569 8.8617 -2.2278 23 6 8.0977 9.4292 -1.0893 24 6 7.6802 9.0064 0.1589 25 6 6.7212 8.0169 0.2685 26 6 5.4539 4.9718 1.5648 27 6 3.9324 4.9184 1.4086 28 7 3.4997 3.5200 1.2930 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.9329 0.9953 -0.9261 37 1 3.9337 0.8648 0.8491 38 1 6.0370 2.4133 -0.6668 39 1 5.9002 2.3064 1.1053 40 1 9.0545 3.5212 -1.6540 41 1 4.6293 6.4622 0.2154 42 1 4.3932 6.4969 -1.5484 43 1 6.1757 7.4285 -3.0079 44 1 7.8832 9.1919 -3.2030 45 1 8.8465 10.2028 -1.1748 46 1 8.1030 9.4494 1.0485 47 1 6.3946 7.6869 1.2435 48 1 5.7458 4.4377 2.4691 49 1 5.7763 6.0106 1.6350 50 1 3.4618 5.3735 2.2801 51 1 3.6401 5.4645 0.5117 52 1 3.7248 3.0015 2.1287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246835889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:56 Heat of formation + Delta-G solvation = 26.509210 kcal Electronic energy + Delta-G solvation = -28249.405926 eV Core-core repulsion = 24827.187488 eV Total energy + Delta-G solvation = -3422.218438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.80402 -39.57797 -37.09466 -35.68834 -34.04733 -32.66305 -32.24056 -31.58039 -30.43878 -29.42071 -27.12667 -25.67449 -24.57159 -23.52398 -23.22315 -22.15218 -21.69848 -21.33011 -20.65987 -18.36013 -17.59742 -16.77341 -16.68458 -16.31543 -16.03549 -15.84100 -15.61079 -15.38865 -15.28909 -14.92404 -14.67849 -14.18079 -14.05607 -13.85876 -13.67685 -13.45775 -13.31921 -13.21142 -12.96911 -12.84630 -12.62285 -12.58413 -12.38852 -12.23518 -12.05977 -11.95280 -11.80343 -11.78295 -11.56996 -11.55292 -11.52242 -11.23503 -11.05363 -10.72486 -10.53228 -9.60455 -9.38907 -9.04723 -8.40017 -7.70609 -5.35248 0.70489 0.73214 1.36757 1.42970 1.48894 2.49174 3.07574 3.34752 3.53294 3.77355 3.94474 4.11506 4.17369 4.24041 4.26774 4.31321 4.34640 4.38401 4.44290 4.47779 4.51058 4.63382 4.64760 4.67720 4.81646 4.82767 4.91789 4.95939 4.97290 5.04536 5.08684 5.11833 5.15805 5.16762 5.24568 5.28326 5.36529 5.38178 5.42112 5.44555 5.48591 5.57021 5.64871 5.69932 5.76171 5.78241 5.79380 5.93846 6.05117 6.34374 6.36844 6.50934 6.75524 7.27388 7.94899 8.47879 9.20635 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.004627 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.153825 B = 6049.500924 C = 7353.524567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.099 4.099 4 C -0.106 4.106 5 C 0.111 3.889 6 H 0.061 0.939 7 C -0.132 4.132 8 C 0.191 3.809 9 H 0.019 0.981 10 N -0.570 5.570 11 C -0.243 4.243 12 H 0.047 0.953 13 C -0.012 4.012 14 N -0.910 5.910 15 Si 0.927 3.073 16 H -0.269 1.269 17 H -0.298 1.298 18 H -0.292 1.292 19 C 0.158 3.842 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.161 4.161 27 C 0.056 3.944 28 N -0.666 5.666 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.037 0.963 39 H 0.040 0.960 40 H 0.244 0.756 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.123 0.877 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 1.724 7.086 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.001 3.999 6 H 0.079 0.921 7 C -0.173 4.173 8 C 0.085 3.915 9 H 0.037 0.963 10 N -0.291 5.291 11 C -0.374 4.374 12 H 0.064 0.936 13 C -0.211 4.211 14 N -0.554 5.554 15 Si 0.757 3.243 16 H -0.193 1.193 17 H -0.226 1.226 18 H -0.219 1.219 19 C 0.033 3.967 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.201 4.201 27 C -0.074 4.074 28 N -0.294 5.294 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.112 0.888 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.144 0.856 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.141 0.859 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.106 0.894 51 H 0.095 0.905 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.902 1.717 6.809 12.139 hybrid contribution 2.164 -0.925 -1.171 2.628 sum -7.738 0.792 5.639 9.607 Atomic orbital electron populations 1.21736 0.95174 1.01755 1.01851 1.21562 0.96462 0.96746 1.01497 1.21394 0.93780 0.96317 1.02200 1.21575 0.96858 0.95245 1.00733 1.21197 0.90541 0.94544 0.93633 0.92098 1.22207 0.97691 0.98100 0.99280 1.20157 0.96411 0.89853 0.85091 0.96290 1.43913 1.70604 1.12970 1.01570 1.18883 0.99460 1.28986 0.90107 0.93587 1.25634 0.95118 1.01918 0.98382 1.70061 1.01733 1.46022 1.37571 0.85822 0.77337 0.79646 0.81473 1.19335 1.22554 1.21944 1.20554 0.91978 0.83214 1.00905 1.21072 0.99842 0.95141 0.93063 1.21030 0.98489 0.96891 0.97420 1.21306 0.97348 0.97396 0.99311 1.21270 1.00967 1.01410 0.92460 1.21345 0.97559 0.97789 0.98173 1.21170 0.98317 0.97445 0.97968 1.22570 0.98657 1.01275 0.97594 1.22317 0.91704 0.90674 1.02657 1.60804 1.60687 1.02733 1.05213 0.93174 0.92203 0.92334 0.93106 0.91854 0.90395 0.93786 0.93774 0.92091 0.94447 0.94154 0.94661 0.88766 0.94599 0.88241 0.85596 0.84366 0.84377 0.85903 0.91670 0.91672 0.89375 0.90531 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.13 -2.72 5.93 30.59 0.18 -2.53 16 3 C -0.10 -2.54 5.08 30.60 0.16 -2.39 16 4 C -0.11 -3.18 4.91 30.60 0.15 -3.03 16 5 C 0.11 3.82 2.38 44.94 0.11 3.93 16 6 H 0.06 2.50 7.42 -2.39 -0.02 2.49 16 7 C -0.13 -5.43 4.53 30.65 0.14 -5.29 16 8 C 0.19 8.22 2.57 45.07 0.12 8.34 16 9 H 0.02 1.04 6.51 -2.38 -0.02 1.02 16 10 N -0.57 -25.80 1.94 -681.89 -1.32 -27.12 16 11 C -0.24 -12.56 8.24 84.03 0.69 -11.87 16 12 H 0.05 2.46 7.89 -2.92 -0.02 2.44 16 13 C -0.01 -0.66 3.82 84.86 0.32 -0.34 16 14 N -0.91 -52.25 11.50 21.65 0.25 -52.00 16 15 Si 0.93 44.55 29.59 68.60 2.03 46.58 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 19 C 0.16 6.26 4.21 85.63 0.36 6.62 16 20 C -0.09 -3.52 5.41 -19.86 -0.11 -3.63 16 21 C -0.12 -4.86 9.67 22.27 0.22 -4.65 16 22 C -0.14 -4.82 10.05 22.27 0.22 -4.60 16 23 C -0.14 -4.55 10.05 22.27 0.22 -4.32 16 24 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 25 C -0.13 -4.64 9.42 22.27 0.21 -4.43 16 26 C -0.16 -5.34 5.04 30.65 0.15 -5.19 16 27 C 0.06 1.59 5.81 86.33 0.50 2.10 16 28 N -0.67 -18.98 5.46 -491.69 -2.68 -21.66 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 1.95 7.34 -2.39 -0.02 1.93 16 35 H 0.04 1.22 8.14 -2.38 -0.02 1.21 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.82 6.31 -2.39 -0.02 1.80 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.24 13.92 8.32 -92.71 -0.77 13.15 16 41 H 0.09 3.22 3.45 -2.39 -0.01 3.21 16 42 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 43 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 44 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 45 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 47 H 0.12 3.92 6.12 -2.91 -0.02 3.90 16 48 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.06 2.13 4.81 -2.39 -0.01 2.12 16 50 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.08 2.45 5.00 -2.39 -0.01 2.43 16 52 H 0.34 8.61 8.79 -89.70 -0.79 7.83 16 Total: -1.00 -59.63 388.68 2.95 -56.68 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.10 Total: 34.78 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 4.58 Total: -37.27 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -3.76 Total: -100.78 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -59.63 2.95 -56.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246835889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.184 kcal (2) G-P(sol) polarization free energy of solvation -59.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds