Wall clock time and date at job start Tue Mar 31 2020 11:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47140 * 2 1 4 4 C 1.52998 * 109.47140 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47350 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.45939 * 54.97597 * 5 4 3 7 7 C 1.53036 * 109.45886 * 174.95122 * 5 4 3 8 8 C 1.53118 * 109.27952 * 179.19157 * 7 5 4 9 9 H 1.09000 * 109.52009 * 62.25414 * 8 7 5 10 10 N 1.46502 * 109.57368 * 182.40850 * 8 7 5 11 11 C 1.36942 * 119.99668 * 59.84146 * 10 8 7 12 12 H 1.07997 * 120.00149 * 5.77958 * 11 10 8 13 13 C 1.38814 * 119.99637 * 185.78641 * 11 10 8 14 14 N 1.31616 * 119.99994 * 355.02406 * 13 11 10 15 15 Si 1.86796 * 119.99865 * 175.03022 * 13 11 10 16 16 H 1.48495 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47268 * 119.99500 * 15 13 11 18 18 H 1.48506 * 109.47161 * 239.99362 * 15 13 11 19 19 C 1.46494 * 119.99917 * 239.84264 * 10 8 7 20 20 C 1.50704 * 109.47110 * 85.45415 * 19 10 8 21 21 C 1.38236 * 119.99510 * 274.99830 * 20 19 10 22 22 C 1.38231 * 119.99540 * 179.74825 * 21 20 19 23 23 C 1.38237 * 120.00208 * 0.52611 * 22 21 20 24 24 C 1.38237 * 120.00089 * 359.75281 * 23 22 21 25 25 C 1.38232 * 119.99953 * 95.27644 * 20 19 10 26 26 C 1.53119 * 109.15900 * 302.34380 * 8 7 5 27 27 C 1.53036 * 109.27833 * 57.66121 * 26 8 7 28 28 N 1.46848 * 109.52025 * 300.81429 * 27 26 8 29 29 H 1.08999 * 109.47179 * 60.00120 * 1 2 3 30 30 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47347 * 300.00187 * 1 2 3 32 32 H 1.09001 * 109.47347 * 239.99813 * 2 1 3 33 33 H 1.08999 * 109.47179 * 119.99880 * 2 1 3 34 34 H 1.09001 * 109.47153 * 59.99694 * 3 2 1 35 35 H 1.09002 * 109.46799 * 299.99506 * 3 2 1 36 36 H 1.09001 * 109.47347 * 59.99813 * 4 3 2 37 37 H 1.08999 * 109.47179 * 299.99880 * 4 3 2 38 38 H 1.09001 * 109.49894 * 59.24851 * 7 5 4 39 39 H 1.08999 * 109.50101 * 299.13440 * 7 5 4 40 40 H 0.97000 * 119.99883 * 180.02562 * 14 13 11 41 41 H 1.09002 * 109.46782 * 205.45083 * 19 10 8 42 42 H 1.08992 * 109.47434 * 325.44541 * 19 10 8 43 43 H 1.08001 * 120.00160 * 359.97438 * 21 20 19 44 44 H 1.08007 * 120.00281 * 180.29985 * 22 21 20 45 45 H 1.08003 * 120.00361 * 179.76983 * 23 22 21 46 46 H 1.07994 * 120.00136 * 179.97438 * 24 23 22 47 47 H 1.07992 * 120.00441 * 359.97438 * 25 20 19 48 48 H 1.09004 * 109.50106 * 177.59438 * 26 8 7 49 49 H 1.09000 * 109.50340 * 297.67408 * 26 8 7 50 50 H 1.08997 * 109.46535 * 60.83107 * 27 26 8 51 51 H 1.08998 * 109.46441 * 180.81852 * 27 26 8 52 52 H 1.00896 * 111.00153 * 185.83971 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6453 3.4242 0.8404 7 6 5.6051 2.8865 0.1251 8 6 6.1128 4.3309 0.1037 9 1 5.7090 4.8716 0.9597 10 7 7.5764 4.3377 0.1664 11 6 8.3065 3.7147 -0.8104 12 1 7.8091 3.2996 -1.6745 13 6 9.6859 3.6166 -0.6898 14 7 10.3025 4.2065 0.3123 15 14 10.6670 2.6476 -1.9498 16 1 9.7450 2.0852 -2.9690 17 1 11.6477 3.5456 -2.6108 18 1 11.3883 1.5410 -1.2711 19 6 8.2589 5.0110 1.2741 20 6 8.3669 4.0682 2.4449 21 6 7.3175 3.9514 3.3371 22 6 7.4145 3.0828 4.4081 23 6 8.5651 2.3392 4.5931 24 6 9.6167 2.4604 3.7041 25 6 9.5175 3.3248 2.6298 26 6 5.6530 5.0060 -1.1914 27 6 4.1264 4.9432 -1.2796 28 7 3.6909 3.5410 -1.2562 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 3.9330 0.9288 -0.8908 37 1 3.9337 0.9286 0.8891 38 1 6.0399 2.3355 -0.7090 39 1 5.8929 2.4134 1.0639 40 1 11.2664 4.1382 0.3963 41 1 9.2574 5.3118 0.9566 42 1 7.6904 5.8929 1.5689 43 1 6.4205 4.5359 3.1954 44 1 6.5928 2.9878 5.1026 45 1 8.6423 1.6634 5.4319 46 1 10.5158 1.8798 3.8488 47 1 10.3389 3.4191 1.9351 48 1 5.9750 6.0474 -1.1931 49 1 6.0891 4.4889 -2.0461 50 1 3.6916 5.4728 -0.4319 51 1 3.7967 5.4102 -2.2076 52 1 2.6961 3.4688 -1.4086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246835905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:03 Heat of formation + Delta-G solvation = 42.214571 kcal Electronic energy + Delta-G solvation = -27840.408053 eV Core-core repulsion = 24418.870651 eV Total energy + Delta-G solvation = -3421.537402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.90529 -38.06545 -36.02363 -34.88536 -32.17840 -31.63299 -30.79475 -29.71375 -28.80522 -28.27203 -25.49587 -24.43363 -23.31808 -21.89278 -21.49685 -21.18428 -20.38543 -19.58776 -19.20257 -16.75084 -16.11455 -15.72904 -15.52320 -15.15307 -14.44730 -14.34087 -13.98753 -13.84074 -13.74811 -13.47668 -13.21908 -13.06954 -12.76534 -12.52126 -12.43674 -12.16078 -11.98810 -11.77321 -11.69390 -11.31939 -11.18784 -11.11207 -10.92894 -10.89716 -10.58212 -10.47412 -10.44789 -10.38773 -10.30798 -10.18893 -9.94787 -9.79836 -9.38292 -9.34388 -8.65201 -8.12066 -7.89540 -7.57169 -6.82121 -5.48582 -3.20551 2.39681 2.50754 3.37404 3.45486 3.46199 4.43254 4.47425 4.72672 4.85419 4.88102 5.01281 5.26176 5.30314 5.34182 5.39173 5.49178 5.56599 5.68166 5.71324 5.72987 5.74785 5.80230 5.84472 5.90652 5.92376 5.95697 6.04771 6.07206 6.14628 6.26356 6.27858 6.31902 6.33832 6.40095 6.48618 6.58290 6.67617 6.73461 6.77557 6.90115 7.05818 7.15164 7.19733 7.24056 7.42977 7.45103 7.61360 7.69853 7.77233 7.92843 8.08436 8.27631 8.65082 9.32859 9.87193 10.23100 11.21241 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.004493 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.040494 B = 6230.969738 C = 7381.776289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.114 4.114 5 C 0.092 3.908 6 H 0.028 0.972 7 C -0.115 4.115 8 C 0.178 3.822 9 H 0.045 0.955 10 N -0.585 5.585 11 C -0.193 4.193 12 H 0.079 0.921 13 C -0.028 4.028 14 N -0.910 5.910 15 Si 0.915 3.085 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.291 1.291 19 C 0.140 3.860 20 C -0.054 4.054 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.096 4.096 26 C -0.124 4.124 27 C 0.063 3.937 28 N -0.683 5.683 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.250 0.750 41 H 0.177 0.823 42 H 0.001 0.999 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.176 0.824 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.020 0.980 51 H 0.065 0.935 52 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 -2.365 1.729 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.018 4.018 6 H 0.046 0.954 7 C -0.155 4.155 8 C 0.070 3.930 9 H 0.064 0.936 10 N -0.302 5.302 11 C -0.322 4.322 12 H 0.096 0.904 13 C -0.218 4.218 14 N -0.564 5.564 15 Si 0.747 3.253 16 H -0.207 1.207 17 H -0.219 1.219 18 H -0.218 1.218 19 C 0.015 3.985 20 C -0.056 4.056 21 C -0.153 4.153 22 C -0.164 4.164 23 C -0.166 4.166 24 C -0.168 4.168 25 C -0.114 4.114 26 C -0.163 4.163 27 C -0.067 4.067 28 N -0.315 5.315 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.192 0.808 42 H 0.019 0.981 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.192 0.808 48 H 0.076 0.924 49 H 0.091 0.909 50 H 0.038 0.962 51 H 0.083 0.917 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.850 -2.589 1.328 12.202 hybrid contribution -0.493 -0.414 0.366 0.741 sum -12.343 -3.003 1.694 12.815 Atomic orbital electron populations 1.21780 0.96246 1.01305 1.01612 1.21524 0.95436 0.97209 1.02029 1.21645 0.96145 0.96537 1.01451 1.21666 0.94417 0.96543 1.02527 1.21530 0.97125 0.93634 0.89537 0.95436 1.22067 0.91599 0.99782 1.02042 1.20340 0.84931 0.93272 0.94489 0.93637 1.44280 0.98929 1.62630 1.24397 1.19553 0.89266 1.25116 0.98221 0.90357 1.24649 0.96568 1.02015 0.98553 1.69016 1.07753 1.48572 1.31089 0.85942 0.79871 0.79341 0.80172 1.20713 1.21928 1.21797 1.21671 1.04215 0.88722 0.83845 1.20960 0.91928 0.97634 0.95103 1.21072 0.98603 0.99620 0.95962 1.20810 0.97530 0.99148 0.98880 1.20862 0.94992 1.00980 0.99789 1.21292 0.97964 1.00793 0.96727 1.22944 1.01162 0.91942 0.95325 1.22044 0.92541 1.00726 1.01037 1.21912 0.97343 0.88159 0.99296 1.60357 1.19360 1.15586 1.36192 0.92841 0.93029 0.92969 0.91982 0.92177 0.92592 0.92012 0.91109 0.91758 0.91075 0.92376 0.93663 0.80798 0.98092 0.88458 0.88309 0.88336 0.88101 0.80779 0.92363 0.90918 0.96186 0.91694 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.36 16 3 C -0.12 -1.28 4.99 -26.73 -0.13 -1.41 16 4 C -0.11 -1.49 4.89 -26.73 -0.13 -1.62 16 5 C 0.09 1.38 2.50 -67.72 -0.17 1.21 16 6 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 7 C -0.12 -2.16 4.66 -26.65 -0.12 -2.28 16 8 C 0.18 3.51 2.70 -67.81 -0.18 3.32 16 9 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 10 N -0.58 -13.49 2.46 -166.89 -0.41 -13.90 16 11 C -0.19 -4.81 8.51 -15.06 -0.13 -4.94 16 12 H 0.08 1.98 6.68 -52.49 -0.35 1.63 16 13 C -0.03 -0.70 5.45 -17.43 -0.09 -0.79 16 14 N -0.91 -22.95 5.73 55.49 0.32 -22.63 16 15 Si 0.92 20.95 29.56 -169.99 -5.02 15.92 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 C 0.14 3.27 5.24 -5.19 -0.03 3.24 16 20 C -0.05 -1.21 5.46 -104.62 -0.57 -1.78 16 21 C -0.13 -2.73 9.72 -39.58 -0.38 -3.12 16 22 C -0.15 -2.75 10.05 -39.58 -0.40 -3.14 16 23 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 24 C -0.15 -3.05 10.05 -39.58 -0.40 -3.44 16 25 C -0.10 -2.18 9.21 -39.58 -0.36 -2.55 16 26 C -0.12 -2.23 5.38 -26.65 -0.14 -2.37 16 27 C 0.06 0.92 6.55 -3.83 -0.03 0.89 16 28 N -0.68 -9.75 6.50 -106.76 -0.69 -10.44 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.63 6.63 -51.93 -0.34 0.29 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.49 7.32 -51.93 -0.38 1.11 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.25 6.17 8.08 -40.82 -0.33 5.84 16 41 H 0.18 4.49 4.56 -82.01 -0.37 4.12 16 42 H 0.00 0.02 7.99 -51.93 -0.42 -0.40 16 43 H 0.10 1.87 7.95 -52.49 -0.42 1.46 16 44 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 45 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 46 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 47 H 0.18 4.25 4.55 -52.69 -0.24 4.01 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.07 1.45 7.09 -51.93 -0.37 1.08 16 50 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 52 H 0.33 4.00 7.00 -39.29 -0.28 3.72 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -25.07 392.41 -12.82 -37.88 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -9.46 Total: 11.49 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -3.46 Total: -24.24 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.79 Total: -46.97 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -25.07 -12.82 -37.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246835905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.098 kcal (2) G-P(sol) polarization free energy of solvation -25.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds