Wall clock time and date at job start Tue Mar 31 2020 11:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47140 * 2 1 4 4 C 1.52998 * 109.47140 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47350 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.45939 * 54.97597 * 5 4 3 7 7 C 1.53036 * 109.45886 * 174.95122 * 5 4 3 8 8 C 1.53118 * 109.27952 * 179.19157 * 7 5 4 9 9 H 1.09000 * 109.52009 * 62.25414 * 8 7 5 10 10 N 1.46502 * 109.57368 * 182.40850 * 8 7 5 11 11 C 1.36942 * 119.99668 * 59.84146 * 10 8 7 12 12 H 1.07997 * 120.00149 * 5.77958 * 11 10 8 13 13 C 1.38814 * 119.99637 * 185.78641 * 11 10 8 14 14 N 1.31616 * 119.99994 * 355.02406 * 13 11 10 15 15 Si 1.86796 * 119.99865 * 175.03022 * 13 11 10 16 16 H 1.48495 * 109.47222 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47268 * 119.99500 * 15 13 11 18 18 H 1.48506 * 109.47161 * 239.99362 * 15 13 11 19 19 C 1.46494 * 119.99917 * 239.84264 * 10 8 7 20 20 C 1.50704 * 109.47110 * 85.45415 * 19 10 8 21 21 C 1.38236 * 119.99510 * 274.99830 * 20 19 10 22 22 C 1.38231 * 119.99540 * 179.74825 * 21 20 19 23 23 C 1.38237 * 120.00208 * 0.52611 * 22 21 20 24 24 C 1.38237 * 120.00089 * 359.75281 * 23 22 21 25 25 C 1.38232 * 119.99953 * 95.27644 * 20 19 10 26 26 C 1.53119 * 109.15900 * 302.34380 * 8 7 5 27 27 C 1.53036 * 109.27833 * 57.66121 * 26 8 7 28 28 N 1.46848 * 109.52025 * 300.81429 * 27 26 8 29 29 H 1.08999 * 109.47179 * 60.00120 * 1 2 3 30 30 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47347 * 300.00187 * 1 2 3 32 32 H 1.09001 * 109.47347 * 239.99813 * 2 1 3 33 33 H 1.08999 * 109.47179 * 119.99880 * 2 1 3 34 34 H 1.09001 * 109.47153 * 59.99694 * 3 2 1 35 35 H 1.09002 * 109.46799 * 299.99506 * 3 2 1 36 36 H 1.09001 * 109.47347 * 59.99813 * 4 3 2 37 37 H 1.08999 * 109.47179 * 299.99880 * 4 3 2 38 38 H 1.09001 * 109.49894 * 59.24851 * 7 5 4 39 39 H 1.08999 * 109.50101 * 299.13440 * 7 5 4 40 40 H 0.97000 * 119.99883 * 180.02562 * 14 13 11 41 41 H 1.09002 * 109.46782 * 205.45083 * 19 10 8 42 42 H 1.08992 * 109.47434 * 325.44541 * 19 10 8 43 43 H 1.08001 * 120.00160 * 359.97438 * 21 20 19 44 44 H 1.08007 * 120.00281 * 180.29985 * 22 21 20 45 45 H 1.08003 * 120.00361 * 179.76983 * 23 22 21 46 46 H 1.07994 * 120.00136 * 179.97438 * 24 23 22 47 47 H 1.07992 * 120.00441 * 359.97438 * 25 20 19 48 48 H 1.09004 * 109.50106 * 177.59438 * 26 8 7 49 49 H 1.09000 * 109.50340 * 297.67408 * 26 8 7 50 50 H 1.08997 * 109.46535 * 60.83107 * 27 26 8 51 51 H 1.08998 * 109.46441 * 180.81852 * 27 26 8 52 52 H 1.00896 * 111.00153 * 185.83971 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6453 3.4242 0.8404 7 6 5.6051 2.8865 0.1251 8 6 6.1128 4.3309 0.1037 9 1 5.7090 4.8716 0.9597 10 7 7.5764 4.3377 0.1664 11 6 8.3065 3.7147 -0.8104 12 1 7.8091 3.2996 -1.6745 13 6 9.6859 3.6166 -0.6898 14 7 10.3025 4.2065 0.3123 15 14 10.6670 2.6476 -1.9498 16 1 9.7450 2.0852 -2.9690 17 1 11.6477 3.5456 -2.6108 18 1 11.3883 1.5410 -1.2711 19 6 8.2589 5.0110 1.2741 20 6 8.3669 4.0682 2.4449 21 6 7.3175 3.9514 3.3371 22 6 7.4145 3.0828 4.4081 23 6 8.5651 2.3392 4.5931 24 6 9.6167 2.4604 3.7041 25 6 9.5175 3.3248 2.6298 26 6 5.6530 5.0060 -1.1914 27 6 4.1264 4.9432 -1.2796 28 7 3.6909 3.5410 -1.2562 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 3.9330 0.9288 -0.8908 37 1 3.9337 0.9286 0.8891 38 1 6.0399 2.3355 -0.7090 39 1 5.8929 2.4134 1.0639 40 1 11.2664 4.1382 0.3963 41 1 9.2574 5.3118 0.9566 42 1 7.6904 5.8929 1.5689 43 1 6.4205 4.5359 3.1954 44 1 6.5928 2.9878 5.1026 45 1 8.6423 1.6634 5.4319 46 1 10.5158 1.8798 3.8488 47 1 10.3389 3.4191 1.9351 48 1 5.9750 6.0474 -1.1931 49 1 6.0891 4.4889 -2.0461 50 1 3.6916 5.4728 -0.4319 51 1 3.7967 5.4102 -2.2076 52 1 2.6961 3.4688 -1.4086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246835905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:02 Heat of formation + Delta-G solvation = 32.597979 kcal Electronic energy + Delta-G solvation = -27840.825060 eV Core-core repulsion = 24418.870651 eV Total energy + Delta-G solvation = -3421.954409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36484 -39.57096 -37.41852 -36.09459 -33.74742 -32.87690 -32.42852 -31.31549 -30.43602 -29.34998 -27.32938 -25.75456 -24.64010 -23.37556 -23.05424 -22.18112 -21.67636 -21.17419 -20.67954 -18.52919 -17.49058 -17.07520 -16.91351 -16.65829 -15.92327 -15.60147 -15.49523 -15.33279 -15.11275 -14.97105 -14.60436 -14.25459 -14.04861 -13.89569 -13.75277 -13.53680 -13.39199 -13.29588 -12.99462 -12.81311 -12.74664 -12.39776 -12.28602 -12.14767 -12.02976 -11.94687 -11.92111 -11.80959 -11.74215 -11.53491 -11.35856 -11.31520 -11.13075 -10.89863 -10.51315 -9.49528 -9.29545 -9.20862 -8.64689 -7.39357 -5.12929 0.79083 0.91001 1.49743 1.53545 1.59801 2.55674 3.19141 3.29972 3.36142 3.69214 3.87606 4.06677 4.09755 4.15772 4.26516 4.28039 4.32695 4.37476 4.40172 4.48394 4.52743 4.61047 4.62039 4.69377 4.74925 4.78022 4.89191 4.90729 4.96390 5.00964 5.03329 5.07036 5.09903 5.18591 5.23001 5.25700 5.26901 5.38727 5.45283 5.47085 5.52148 5.56292 5.58478 5.62557 5.71619 5.84988 5.97039 6.13214 6.19231 6.40477 6.55627 6.65176 6.78395 7.39872 8.01551 8.34485 9.26472 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.004493 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.040494 B = 6230.969738 C = 7381.776289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.108 4.108 5 C 0.101 3.899 6 H 0.034 0.966 7 C -0.102 4.102 8 C 0.175 3.825 9 H 0.046 0.954 10 N -0.594 5.594 11 C -0.201 4.201 12 H 0.069 0.931 13 C -0.065 4.065 14 N -0.914 5.914 15 Si 0.962 3.038 16 H -0.282 1.282 17 H -0.294 1.294 18 H -0.298 1.298 19 C 0.143 3.857 20 C -0.072 4.072 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.156 4.156 25 C -0.126 4.126 26 C -0.117 4.117 27 C 0.070 3.930 28 N -0.687 5.687 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.245 0.755 41 H 0.153 0.847 42 H 0.001 0.999 43 H 0.106 0.894 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.118 0.882 47 H 0.155 0.845 48 H 0.052 0.948 49 H 0.047 0.953 50 H 0.033 0.967 51 H 0.086 0.914 52 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.120 -3.067 2.749 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.146 4.146 5 C -0.009 4.009 6 H 0.052 0.948 7 C -0.141 4.141 8 C 0.068 3.932 9 H 0.064 0.936 10 N -0.313 5.313 11 C -0.330 4.330 12 H 0.087 0.913 13 C -0.254 4.254 14 N -0.569 5.569 15 Si 0.794 3.206 16 H -0.207 1.207 17 H -0.221 1.221 18 H -0.225 1.225 19 C 0.018 3.982 20 C -0.075 4.075 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.162 4.162 24 C -0.174 4.174 25 C -0.144 4.144 26 C -0.157 4.157 27 C -0.059 4.059 28 N -0.321 5.321 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.169 0.831 42 H 0.020 0.980 43 H 0.124 0.876 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.136 0.864 47 H 0.172 0.828 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.051 0.949 51 H 0.105 0.895 52 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.429 -3.285 2.348 14.983 hybrid contribution 0.324 -0.190 0.099 0.388 sum -14.105 -3.474 2.447 14.731 Atomic orbital electron populations 1.21758 0.94992 1.01933 1.02028 1.21513 0.96514 0.96413 1.01776 1.21576 0.93812 0.97434 1.02106 1.21591 0.96437 0.94869 1.01686 1.21373 0.94174 0.95145 0.90208 0.94796 1.21860 0.94479 0.98239 0.99568 1.20491 0.83201 0.94107 0.95398 0.93556 1.44377 1.00289 1.62535 1.24049 1.19558 0.89574 1.25342 0.98539 0.91310 1.25171 0.97292 1.03043 0.99922 1.69268 1.07382 1.48734 1.31470 0.85216 0.78642 0.78066 0.78692 1.20694 1.22117 1.22503 1.21399 1.02969 0.89269 0.84579 1.20875 0.92910 0.98139 0.95568 1.21184 0.98216 1.00303 0.96191 1.21201 0.98513 0.97695 0.98430 1.21251 0.94065 1.00834 1.00041 1.21504 0.99400 1.00263 0.96265 1.22813 1.01040 0.93940 0.96630 1.21919 0.95294 0.99637 0.98816 1.21829 0.94459 0.88671 1.00987 1.60251 1.20853 1.15357 1.35669 0.92371 0.92372 0.92596 0.92321 0.92460 0.92015 0.91164 0.92281 0.92356 0.93943 0.94494 0.94185 0.83147 0.98045 0.87594 0.84840 0.84756 0.86444 0.82834 0.92917 0.93386 0.94902 0.89539 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -2.15 5.93 30.59 0.18 -1.97 16 3 C -0.11 -2.11 4.99 30.59 0.15 -1.95 16 4 C -0.11 -2.70 4.89 30.59 0.15 -2.55 16 5 C 0.10 2.92 2.50 44.94 0.11 3.03 16 6 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 7 C -0.10 -3.87 4.66 30.65 0.14 -3.73 16 8 C 0.17 7.02 2.70 45.07 0.12 7.14 16 9 H 0.05 1.84 7.75 -2.39 -0.02 1.82 16 10 N -0.59 -28.43 2.46 -681.90 -1.68 -30.11 16 11 C -0.20 -10.43 8.51 84.03 0.71 -9.72 16 12 H 0.07 3.64 6.68 -2.91 -0.02 3.62 16 13 C -0.06 -3.39 5.45 84.86 0.46 -2.93 16 14 N -0.91 -48.16 5.73 21.65 0.12 -48.04 16 15 Si 0.96 44.45 29.56 68.60 2.03 46.47 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 18 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 19 C 0.14 6.92 5.24 85.64 0.45 7.36 16 20 C -0.07 -3.33 5.46 -19.86 -0.11 -3.43 16 21 C -0.14 -5.62 9.72 22.27 0.22 -5.40 16 22 C -0.14 -4.92 10.05 22.27 0.22 -4.70 16 23 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 24 C -0.16 -6.24 10.05 22.27 0.22 -6.01 16 25 C -0.13 -5.88 9.21 22.27 0.21 -5.67 16 26 C -0.12 -4.22 5.38 30.65 0.16 -4.06 16 27 C 0.07 1.92 6.55 86.33 0.57 2.48 16 28 N -0.69 -18.28 6.50 -491.68 -3.20 -21.48 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.22 6.63 -2.39 -0.02 1.20 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.84 7.32 -2.39 -0.02 1.82 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.25 12.68 8.08 -92.71 -0.75 11.93 16 41 H 0.15 8.17 4.56 -61.79 -0.28 7.89 16 42 H 0.00 0.07 7.99 -2.39 -0.02 0.05 16 43 H 0.11 3.97 7.95 -2.91 -0.02 3.95 16 44 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 45 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 46 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 47 H 0.16 7.85 4.55 -3.31 -0.02 7.83 16 48 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 49 H 0.05 1.96 7.09 -2.39 -0.02 1.94 16 50 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 52 H 0.35 7.36 7.00 -89.70 -0.63 6.73 16 Total: -1.00 -55.90 392.41 2.18 -53.71 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.01 Total: 37.75 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 4.91 Total: -38.31 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -4.75 Total: -99.62 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -55.90 2.18 -53.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246835905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.309 kcal (2) G-P(sol) polarization free energy of solvation -55.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds