Wall clock time and date at job start Tue Mar 31 2020 11:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 C 1.53004 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46981 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.46703 * 55.00122 * 5 4 3 7 7 C 1.53037 * 109.46159 * 174.98506 * 5 4 3 8 8 C 1.53119 * 109.28121 * 179.18749 * 7 5 4 9 9 H 1.09000 * 109.52932 * 182.43778 * 8 7 5 10 10 N 1.46498 * 109.52342 * 62.24374 * 8 7 5 11 11 C 1.36940 * 120.00254 * 235.12560 * 10 8 7 12 12 H 1.07998 * 120.00325 * 322.53392 * 11 10 8 13 13 C 1.38813 * 119.99627 * 142.52397 * 11 10 8 14 14 N 1.31617 * 120.00532 * 338.97187 * 13 11 10 15 15 Si 1.86807 * 119.99633 * 158.97358 * 13 11 10 16 16 H 1.48489 * 109.47336 * 59.99895 * 15 13 11 17 17 H 1.48501 * 109.46808 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46832 * 299.99660 * 15 13 11 19 19 C 1.46502 * 119.99824 * 55.13237 * 10 8 7 20 20 C 1.50701 * 109.47304 * 84.47585 * 19 10 8 21 21 C 1.38235 * 119.99939 * 266.31800 * 20 19 10 22 22 C 1.38227 * 119.99991 * 179.80742 * 21 20 19 23 23 C 1.38238 * 120.00252 * 0.41821 * 22 21 20 24 24 C 1.38238 * 119.99850 * 359.81275 * 23 22 21 25 25 C 1.38233 * 119.99794 * 0.02562 * 24 23 22 26 26 C 1.53123 * 109.15647 * 302.34167 * 8 7 5 27 27 C 1.53043 * 109.27902 * 57.65532 * 26 8 7 28 28 N 1.46847 * 109.45483 * 295.02736 * 5 4 3 29 29 H 1.09002 * 109.46977 * 59.99737 * 1 2 3 30 30 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47178 * 300.00100 * 1 2 3 32 32 H 1.09000 * 109.47373 * 240.00418 * 2 1 3 33 33 H 1.08996 * 109.47280 * 119.99943 * 2 1 3 34 34 H 1.09000 * 109.46789 * 60.00060 * 3 2 1 35 35 H 1.08996 * 109.47130 * 300.00035 * 3 2 1 36 36 H 1.08996 * 109.46548 * 60.00750 * 4 3 2 37 37 H 1.09002 * 109.47208 * 300.00490 * 4 3 2 38 38 H 1.09001 * 109.50023 * 299.12458 * 7 5 4 39 39 H 1.08995 * 109.50525 * 59.24417 * 7 5 4 40 40 H 0.96998 * 120.00211 * 179.97438 * 14 13 11 41 41 H 1.09005 * 109.46870 * 204.47102 * 19 10 8 42 42 H 1.08998 * 109.46898 * 324.47278 * 19 10 8 43 43 H 1.08003 * 119.99629 * 359.97438 * 21 20 19 44 44 H 1.08003 * 120.00147 * 180.20679 * 22 21 20 45 45 H 1.07998 * 120.00635 * 179.78398 * 23 22 21 46 46 H 1.07998 * 120.00230 * 179.97438 * 24 23 22 47 47 H 1.08007 * 120.00249 * 179.97438 * 25 24 23 48 48 H 1.09007 * 109.50404 * 177.59217 * 26 8 7 49 49 H 1.08994 * 109.50492 * 297.67252 * 26 8 7 50 50 H 1.08999 * 109.46130 * 60.83708 * 27 26 8 51 51 H 1.08998 * 109.46078 * 180.81299 * 27 26 8 52 52 H 1.00901 * 111.00468 * 302.34588 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6449 3.4238 0.8431 7 6 5.6050 2.8867 0.1281 8 6 6.1125 4.3312 0.1079 9 1 7.2015 4.3355 0.1544 10 7 5.5693 5.0571 1.2586 11 6 4.8713 6.2197 1.0674 12 1 5.1789 6.9143 0.2998 13 6 3.7682 6.5052 1.8602 14 7 3.1407 5.5342 2.4892 15 14 3.1742 8.2678 2.0343 16 1 2.8032 8.7993 0.6983 17 1 1.9895 8.3047 2.9289 18 1 4.2583 9.1003 2.6147 19 6 5.7729 4.5394 2.6138 20 6 7.1140 4.9941 3.1292 21 6 8.2231 4.1826 2.9800 22 6 9.4541 4.6013 3.4491 23 6 9.5744 5.8279 4.0751 24 6 8.4644 6.6374 4.2286 25 6 7.2340 6.2201 3.7565 26 6 5.6530 5.0072 -1.1870 27 6 4.1265 4.9441 -1.2757 28 7 3.6912 3.5418 -1.2533 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9336 0.9288 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 5.8926 2.4131 1.0667 39 1 6.0402 2.3365 -0.7061 40 1 2.3701 5.7338 3.0435 41 1 4.9860 4.9147 3.2682 42 1 5.7411 3.4500 2.5952 43 1 8.1283 3.2225 2.4944 44 1 10.3213 3.9688 3.3295 45 1 10.5354 6.1537 4.4448 46 1 8.5582 7.5955 4.7181 47 1 6.3666 6.8523 3.8768 48 1 5.9748 6.0487 -1.1878 49 1 6.0895 4.4907 -2.0418 50 1 3.6913 5.4731 -0.4278 51 1 3.7970 5.4118 -2.2035 52 1 4.0502 3.0390 -2.0511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246835907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:06 Heat of formation + Delta-G solvation = 25.590871 kcal Electronic energy + Delta-G solvation = -28286.676302 eV Core-core repulsion = 24864.418042 eV Total energy + Delta-G solvation = -3422.258260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.07167 -38.25130 -35.66380 -34.29692 -31.86410 -31.70607 -30.73628 -30.23904 -28.64076 -28.06422 -25.46299 -24.11525 -23.17982 -21.89999 -21.79680 -20.77936 -20.36678 -20.13013 -18.64477 -16.68600 -15.91097 -15.36889 -15.26069 -14.61376 -14.57873 -14.28312 -14.13602 -13.94159 -13.62382 -13.45445 -13.29756 -12.79354 -12.73648 -12.39971 -12.36329 -12.08297 -11.91358 -11.53797 -11.38625 -11.22130 -11.14470 -10.94456 -10.82675 -10.73213 -10.64838 -10.61170 -10.33867 -10.28018 -10.11736 -9.99966 -9.89845 -9.79114 -9.70868 -9.32557 -8.39278 -8.30135 -8.00844 -7.41693 -6.58746 -5.86090 -3.38037 2.01691 2.05238 3.32834 3.39904 3.42640 4.36514 4.49663 5.09766 5.12819 5.25551 5.28421 5.42494 5.44154 5.45425 5.49190 5.60887 5.70235 5.74907 5.85303 5.87846 5.94472 6.04129 6.05734 6.11718 6.16224 6.17646 6.21054 6.23877 6.28788 6.37255 6.44329 6.45228 6.50869 6.60605 6.65983 6.70503 6.71196 6.76724 6.82345 6.90851 6.94502 7.03214 7.07353 7.16054 7.35297 7.41897 7.52781 7.60547 7.72262 7.77553 8.02267 8.37632 8.44736 9.12037 9.73367 10.33773 11.12959 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.004834 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.557546 B = 5791.325156 C = 6844.247131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.107 4.107 5 C 0.091 3.909 6 H 0.122 0.878 7 C -0.162 4.162 8 C 0.175 3.825 9 H 0.020 0.980 10 N -0.565 5.565 11 C -0.248 4.248 12 H 0.060 0.940 13 C 0.017 3.983 14 N -0.876 5.876 15 Si 0.887 3.113 16 H -0.281 1.281 17 H -0.291 1.291 18 H -0.284 1.284 19 C 0.178 3.822 20 C -0.071 4.071 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.145 4.145 24 C -0.128 4.128 25 C -0.099 4.099 26 C -0.137 4.137 27 C 0.047 3.953 28 N -0.674 5.674 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.257 0.743 41 H 0.102 0.898 42 H 0.034 0.966 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.119 0.881 48 H 0.063 0.937 49 H 0.036 0.964 50 H 0.132 0.868 51 H 0.042 0.958 52 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 -6.251 -1.984 7.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.019 4.019 6 H 0.140 0.860 7 C -0.203 4.203 8 C 0.069 3.931 9 H 0.038 0.962 10 N -0.285 5.285 11 C -0.378 4.378 12 H 0.078 0.922 13 C -0.184 4.184 14 N -0.517 5.517 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.217 1.217 18 H -0.210 1.210 19 C 0.052 3.948 20 C -0.074 4.074 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.164 4.164 24 C -0.146 4.146 25 C -0.118 4.118 26 C -0.176 4.176 27 C -0.082 4.082 28 N -0.300 5.300 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.120 0.880 42 H 0.052 0.948 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.137 0.863 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.149 0.851 51 H 0.061 0.939 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.630 -6.104 -1.693 6.859 hybrid contribution 1.025 0.815 -0.067 1.311 sum 3.655 -5.289 -1.760 6.666 Atomic orbital electron populations 1.21762 0.96465 1.00689 1.01876 1.21574 0.95409 0.98248 1.01001 1.21474 0.95319 0.94816 1.03015 1.21604 0.95848 0.96936 1.00114 1.21640 0.92114 0.93371 0.94742 0.86013 1.22694 0.98739 0.98886 0.99952 1.20409 0.94455 0.89915 0.88362 0.96248 1.43689 1.61280 1.25239 0.98320 1.18801 1.05094 0.95140 1.18772 0.92227 1.25085 0.95397 0.96761 1.01171 1.69927 1.19213 1.29926 1.32637 0.86614 0.77925 0.85775 0.77993 1.20677 1.21651 1.21009 1.19971 0.91029 0.95566 0.88245 1.21313 0.98687 0.93835 0.93590 1.21032 0.92717 0.99741 1.00826 1.20977 0.97175 0.96575 1.00069 1.20880 0.97950 0.95459 1.02075 1.21086 0.93390 0.99185 1.00964 1.21110 0.97029 0.96289 0.97393 1.22134 0.99175 1.00632 0.95702 1.22477 0.92653 0.89573 1.03490 1.60738 1.62711 1.03223 1.03369 0.92887 0.93559 0.92774 0.92843 0.92758 0.91988 0.91125 0.93672 0.92808 0.92660 0.94285 0.93312 0.88027 0.94778 0.87329 0.87438 0.87454 0.87268 0.86290 0.91862 0.94506 0.85054 0.93930 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.76 16 3 C -0.11 -1.67 5.10 -26.73 -0.14 -1.81 16 4 C -0.11 -1.69 4.84 -26.73 -0.13 -1.82 16 5 C 0.09 1.67 2.28 -67.73 -0.15 1.52 16 6 H 0.12 2.79 7.57 -51.93 -0.39 2.40 16 7 C -0.16 -2.91 4.64 -26.65 -0.12 -3.04 16 8 C 0.17 3.45 3.36 -67.81 -0.23 3.23 16 9 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 10 N -0.56 -12.29 1.89 -166.88 -0.32 -12.61 16 11 C -0.25 -5.89 5.82 -15.06 -0.09 -5.98 16 12 H 0.06 1.47 6.42 -52.49 -0.34 1.14 16 13 C 0.02 0.42 4.51 -17.43 -0.08 0.34 16 14 N -0.88 -22.12 11.41 55.49 0.63 -21.49 16 15 Si 0.89 20.10 29.60 -169.99 -5.03 15.06 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.18 3.82 5.24 -5.19 -0.03 3.79 16 20 C -0.07 -1.41 5.46 -104.62 -0.57 -1.98 16 21 C -0.12 -2.22 9.69 -39.59 -0.38 -2.60 16 22 C -0.13 -2.09 10.05 -39.59 -0.40 -2.48 16 23 C -0.15 -2.29 10.05 -39.58 -0.40 -2.69 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 25 C -0.10 -1.95 9.72 -39.58 -0.38 -2.33 16 26 C -0.14 -2.58 5.08 -26.65 -0.14 -2.71 16 27 C 0.05 0.91 6.21 -3.83 -0.02 0.89 16 28 N -0.67 -12.13 5.95 -106.76 -0.64 -12.77 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.15 7.75 -51.93 -0.40 0.75 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 1.01 6.48 -51.93 -0.34 0.68 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 41 H 0.10 2.47 5.54 -51.93 -0.29 2.18 16 42 H 0.03 0.72 6.11 -51.93 -0.32 0.40 16 43 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 44 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 47 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 48 H 0.06 1.25 6.81 -51.93 -0.35 0.90 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.13 3.06 4.84 -51.93 -0.25 2.81 16 51 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.31 5.09 8.79 -39.29 -0.35 4.74 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -23.71 394.76 -12.20 -35.91 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -9.35 Total: 13.38 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -3.45 Total: -23.44 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.32 Total: -46.86 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -23.71 -12.20 -35.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246835907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.500 kcal (2) G-P(sol) polarization free energy of solvation -23.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds