Wall clock time and date at job start Tue Mar 31 2020 11:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 C 1.53004 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46981 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.46703 * 55.00122 * 5 4 3 7 7 C 1.53037 * 109.46159 * 174.98506 * 5 4 3 8 8 C 1.53119 * 109.28121 * 179.18749 * 7 5 4 9 9 H 1.09000 * 109.52932 * 182.43778 * 8 7 5 10 10 N 1.46498 * 109.52342 * 62.24374 * 8 7 5 11 11 C 1.36940 * 120.00254 * 235.12560 * 10 8 7 12 12 H 1.07998 * 120.00325 * 322.53392 * 11 10 8 13 13 C 1.38813 * 119.99627 * 142.52397 * 11 10 8 14 14 N 1.31617 * 120.00532 * 338.97187 * 13 11 10 15 15 Si 1.86807 * 119.99633 * 158.97358 * 13 11 10 16 16 H 1.48489 * 109.47336 * 59.99895 * 15 13 11 17 17 H 1.48501 * 109.46808 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46832 * 299.99660 * 15 13 11 19 19 C 1.46502 * 119.99824 * 55.13237 * 10 8 7 20 20 C 1.50701 * 109.47304 * 84.47585 * 19 10 8 21 21 C 1.38235 * 119.99939 * 266.31800 * 20 19 10 22 22 C 1.38227 * 119.99991 * 179.80742 * 21 20 19 23 23 C 1.38238 * 120.00252 * 0.41821 * 22 21 20 24 24 C 1.38238 * 119.99850 * 359.81275 * 23 22 21 25 25 C 1.38233 * 119.99794 * 0.02562 * 24 23 22 26 26 C 1.53123 * 109.15647 * 302.34167 * 8 7 5 27 27 C 1.53043 * 109.27902 * 57.65532 * 26 8 7 28 28 N 1.46847 * 109.45483 * 295.02736 * 5 4 3 29 29 H 1.09002 * 109.46977 * 59.99737 * 1 2 3 30 30 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47178 * 300.00100 * 1 2 3 32 32 H 1.09000 * 109.47373 * 240.00418 * 2 1 3 33 33 H 1.08996 * 109.47280 * 119.99943 * 2 1 3 34 34 H 1.09000 * 109.46789 * 60.00060 * 3 2 1 35 35 H 1.08996 * 109.47130 * 300.00035 * 3 2 1 36 36 H 1.08996 * 109.46548 * 60.00750 * 4 3 2 37 37 H 1.09002 * 109.47208 * 300.00490 * 4 3 2 38 38 H 1.09001 * 109.50023 * 299.12458 * 7 5 4 39 39 H 1.08995 * 109.50525 * 59.24417 * 7 5 4 40 40 H 0.96998 * 120.00211 * 179.97438 * 14 13 11 41 41 H 1.09005 * 109.46870 * 204.47102 * 19 10 8 42 42 H 1.08998 * 109.46898 * 324.47278 * 19 10 8 43 43 H 1.08003 * 119.99629 * 359.97438 * 21 20 19 44 44 H 1.08003 * 120.00147 * 180.20679 * 22 21 20 45 45 H 1.07998 * 120.00635 * 179.78398 * 23 22 21 46 46 H 1.07998 * 120.00230 * 179.97438 * 24 23 22 47 47 H 1.08007 * 120.00249 * 179.97438 * 25 24 23 48 48 H 1.09007 * 109.50404 * 177.59217 * 26 8 7 49 49 H 1.08994 * 109.50492 * 297.67252 * 26 8 7 50 50 H 1.08999 * 109.46130 * 60.83708 * 27 26 8 51 51 H 1.08998 * 109.46078 * 180.81299 * 27 26 8 52 52 H 1.00901 * 111.00468 * 302.34588 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6449 3.4238 0.8431 7 6 5.6050 2.8867 0.1281 8 6 6.1125 4.3312 0.1079 9 1 7.2015 4.3355 0.1544 10 7 5.5693 5.0571 1.2586 11 6 4.8713 6.2197 1.0674 12 1 5.1789 6.9143 0.2998 13 6 3.7682 6.5052 1.8602 14 7 3.1407 5.5342 2.4892 15 14 3.1742 8.2678 2.0343 16 1 2.8032 8.7993 0.6983 17 1 1.9895 8.3047 2.9289 18 1 4.2583 9.1003 2.6147 19 6 5.7729 4.5394 2.6138 20 6 7.1140 4.9941 3.1292 21 6 8.2231 4.1826 2.9800 22 6 9.4541 4.6013 3.4491 23 6 9.5744 5.8279 4.0751 24 6 8.4644 6.6374 4.2286 25 6 7.2340 6.2201 3.7565 26 6 5.6530 5.0072 -1.1870 27 6 4.1265 4.9441 -1.2757 28 7 3.6912 3.5418 -1.2533 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9336 0.9288 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 5.8926 2.4131 1.0667 39 1 6.0402 2.3365 -0.7061 40 1 2.3701 5.7338 3.0435 41 1 4.9860 4.9147 3.2682 42 1 5.7411 3.4500 2.5952 43 1 8.1283 3.2225 2.4944 44 1 10.3213 3.9688 3.3295 45 1 10.5354 6.1537 4.4448 46 1 8.5582 7.5955 4.7181 47 1 6.3666 6.8523 3.8768 48 1 5.9748 6.0487 -1.1878 49 1 6.0895 4.4907 -2.0418 50 1 3.6913 5.4731 -0.4278 51 1 3.7970 5.4118 -2.2035 52 1 4.0502 3.0390 -2.0511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246835907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:05 Heat of formation + Delta-G solvation = 16.951738 kcal Electronic energy + Delta-G solvation = -28287.050923 eV Core-core repulsion = 24864.418042 eV Total energy + Delta-G solvation = -3422.632881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61265 -39.66585 -37.06729 -35.74347 -33.61732 -33.10638 -32.19295 -31.61385 -30.25311 -29.40345 -27.14010 -25.60993 -24.62336 -23.39697 -23.25512 -22.01306 -21.83844 -21.53145 -20.25757 -18.40588 -17.36708 -17.02589 -16.51378 -16.17411 -16.11257 -15.87599 -15.61072 -15.26636 -15.08911 -14.99418 -14.73745 -14.16760 -14.12995 -13.73157 -13.67060 -13.47174 -13.29553 -13.03146 -12.95657 -12.92155 -12.65298 -12.58112 -12.32989 -12.32481 -12.03737 -11.95935 -11.82914 -11.76856 -11.66808 -11.44110 -11.40529 -11.25775 -11.19425 -10.85849 -10.24563 -9.67927 -9.43459 -8.91719 -8.39452 -7.72788 -5.26395 0.63810 0.66445 1.45345 1.50148 1.52891 2.54399 3.02822 3.36158 3.64504 3.77269 3.96090 4.12905 4.18098 4.22881 4.25376 4.32171 4.34834 4.39078 4.44276 4.49220 4.55979 4.63814 4.70172 4.73869 4.81894 4.85610 4.89823 4.94549 5.00721 5.05391 5.06330 5.12215 5.18150 5.21704 5.27190 5.31230 5.32985 5.36197 5.39054 5.51579 5.53182 5.64673 5.68115 5.71361 5.75556 5.80798 5.84679 5.90138 6.06484 6.30516 6.48677 6.56300 6.97655 7.26261 7.94103 8.49665 9.21991 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.004834 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.557546 B = 5791.325156 C = 6844.247131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.102 4.102 4 C -0.099 4.099 5 C 0.098 3.902 6 H 0.073 0.927 7 C -0.151 4.151 8 C 0.170 3.830 9 H 0.016 0.984 10 N -0.570 5.570 11 C -0.233 4.233 12 H 0.049 0.951 13 C -0.017 4.017 14 N -0.895 5.895 15 Si 0.927 3.073 16 H -0.280 1.280 17 H -0.299 1.299 18 H -0.287 1.287 19 C 0.189 3.811 20 C -0.092 4.092 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.130 4.130 27 C 0.053 3.947 28 N -0.672 5.672 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.247 0.753 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.117 0.883 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.130 0.870 47 H 0.092 0.908 48 H 0.048 0.952 49 H 0.064 0.936 50 H 0.091 0.909 51 H 0.055 0.945 52 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 -7.784 -3.139 10.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.012 4.012 6 H 0.092 0.908 7 C -0.192 4.192 8 C 0.064 3.936 9 H 0.034 0.966 10 N -0.291 5.291 11 C -0.363 4.363 12 H 0.067 0.933 13 C -0.216 4.216 14 N -0.538 5.538 15 Si 0.758 3.242 16 H -0.206 1.206 17 H -0.225 1.225 18 H -0.214 1.214 19 C 0.063 3.937 20 C -0.095 4.095 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.155 4.155 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.169 4.169 27 C -0.076 4.076 28 N -0.300 5.300 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.135 0.865 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.148 0.852 47 H 0.110 0.890 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.109 0.891 51 H 0.074 0.926 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.083 -7.638 -2.858 9.610 hybrid contribution 0.362 1.293 0.302 1.376 sum 5.446 -6.345 -2.556 8.744 Atomic orbital electron populations 1.21759 0.95753 1.01831 1.01427 1.21522 0.96058 0.96189 1.01885 1.21372 0.95178 0.96412 1.00982 1.21526 0.95910 0.95136 1.01125 1.21413 0.92188 0.94356 0.93271 0.90832 1.22569 0.98330 0.97720 1.00587 1.20520 0.94114 0.90965 0.87977 0.96610 1.43751 1.61201 1.25007 0.99167 1.18725 1.04436 0.95460 1.17690 0.93318 1.25425 0.95941 0.98319 1.01927 1.70049 1.19516 1.30597 1.33669 0.85979 0.77003 0.83774 0.77490 1.20580 1.22540 1.21398 1.19667 0.91387 0.94956 0.87687 1.21112 0.98386 0.94706 0.95246 1.21151 0.92889 0.99804 1.01113 1.21381 0.97346 0.96995 0.98445 1.21323 0.98869 0.94776 1.00563 1.21339 0.92697 1.00371 1.00418 1.21037 0.97609 0.96394 0.99353 1.22067 0.98644 1.00028 0.96157 1.22224 0.92933 0.90189 1.02289 1.60630 1.62926 1.02638 1.03837 0.92872 0.91593 0.93774 0.91270 0.92435 0.95100 0.92067 0.91431 0.92760 0.93270 0.91839 0.94365 0.91422 0.95149 0.86498 0.83908 0.83705 0.85175 0.88974 0.93309 0.91790 0.89108 0.92646 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.12 -2.87 5.93 30.60 0.18 -2.69 16 3 C -0.10 -3.12 5.10 30.60 0.16 -2.97 16 4 C -0.10 -3.03 4.84 30.59 0.15 -2.88 16 5 C 0.10 3.60 2.28 44.94 0.10 3.70 16 6 H 0.07 3.52 7.57 -2.39 -0.02 3.50 16 7 C -0.15 -5.29 4.64 30.65 0.14 -5.15 16 8 C 0.17 6.67 3.36 45.07 0.15 6.82 16 9 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 10 N -0.57 -25.71 1.89 -681.88 -1.29 -27.01 16 11 C -0.23 -11.53 5.82 84.03 0.49 -11.04 16 12 H 0.05 2.51 6.42 -2.91 -0.02 2.49 16 13 C -0.02 -0.90 4.51 84.86 0.38 -0.52 16 14 N -0.90 -48.30 11.41 21.65 0.25 -48.06 16 15 Si 0.93 43.27 29.60 68.60 2.03 45.30 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 19 C 0.19 8.53 5.24 85.63 0.45 8.97 16 20 C -0.09 -3.72 5.46 -19.86 -0.11 -3.82 16 21 C -0.13 -4.49 9.69 22.27 0.22 -4.27 16 22 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 23 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 24 C -0.13 -4.26 10.05 22.27 0.22 -4.03 16 25 C -0.12 -5.02 9.72 22.27 0.22 -4.81 16 26 C -0.13 -4.76 5.08 30.65 0.16 -4.61 16 27 C 0.05 2.06 6.21 86.33 0.54 2.59 16 28 N -0.67 -23.72 5.95 -491.69 -2.93 -26.65 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.98 7.75 -2.39 -0.02 1.96 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.78 6.48 -2.39 -0.02 1.76 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 41 H 0.07 3.54 5.54 -2.38 -0.01 3.52 16 42 H 0.03 1.35 6.11 -2.39 -0.01 1.33 16 43 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 45 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 46 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 47 H 0.09 4.10 8.06 -2.91 -0.02 4.07 16 48 H 0.05 1.92 6.81 -2.38 -0.02 1.91 16 49 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.09 4.39 4.84 -2.39 -0.01 4.38 16 51 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 52 H 0.33 9.91 8.79 -89.69 -0.79 9.12 16 Total: -1.00 -54.67 394.76 2.75 -51.93 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: 0.08 Total: 38.79 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 4.60 Total: -34.30 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.97 Total: -101.71 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -54.67 2.75 -51.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246835907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.878 kcal (2) G-P(sol) polarization free energy of solvation -54.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds