Wall clock time and date at job start Tue Mar 31 2020 11:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47304 * 2 1 4 4 C 1.52995 * 109.47310 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.47264 * 174.87691 * 4 3 2 6 6 C 1.46901 * 110.99944 * 199.71123 * 5 4 3 7 7 C 1.50702 * 109.46845 * 66.04782 * 6 5 4 8 8 H 1.08004 * 120.00194 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99752 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00095 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00282 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46973 * 90.00077 * 11 9 7 13 13 H 1.48499 * 109.47355 * 210.00497 * 11 9 7 14 14 H 1.48505 * 109.46763 * 330.00344 * 11 9 7 15 15 C 1.46898 * 111.00060 * 75.75844 * 5 4 3 16 16 C 1.50693 * 109.47219 * 199.76181 * 15 5 4 17 17 C 1.38311 * 119.86692 * 84.41816 * 16 15 5 18 18 C 1.38307 * 119.87973 * 180.13116 * 17 16 15 19 19 C 1.37921 * 120.08085 * 359.92237 * 18 17 16 20 20 C 1.38963 * 120.48669 * 359.86312 * 19 18 17 21 21 C 1.37911 * 119.86986 * 264.14621 * 16 15 5 22 22 N 1.40034 * 110.96300 * 180.47881 * 20 19 18 23 23 C 1.46902 * 111.00026 * 103.50495 * 22 20 19 24 24 C 1.53002 * 109.46859 * 309.88444 * 23 22 20 25 25 C 1.47906 * 107.88866 * 341.68334 * 22 20 19 26 26 C 1.51579 * 131.56276 * 179.60489 * 19 18 17 27 27 H 1.08997 * 109.46819 * 59.99949 * 1 2 3 28 28 H 1.08996 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46892 * 300.00475 * 1 2 3 30 30 H 1.08998 * 109.46892 * 239.99524 * 2 1 3 31 31 H 1.09002 * 109.46812 * 119.99569 * 2 1 3 32 32 H 1.09003 * 109.47271 * 59.99515 * 3 2 1 33 33 H 1.08999 * 109.47013 * 300.00302 * 3 2 1 34 34 H 1.08996 * 109.47369 * 54.87505 * 4 3 2 35 35 H 1.09001 * 109.47273 * 294.87623 * 4 3 2 36 36 H 1.09000 * 109.47024 * 186.03910 * 6 5 4 37 37 H 1.09000 * 109.47226 * 306.04860 * 6 5 4 38 38 H 0.97002 * 120.00074 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.47147 * 79.76045 * 15 5 4 40 40 H 1.09001 * 109.46847 * 319.76027 * 15 5 4 41 41 H 1.07995 * 120.06019 * 0.11193 * 17 16 15 42 42 H 1.07998 * 119.95637 * 179.90679 * 18 17 16 43 43 H 1.07999 * 119.89609 * 0.03600 * 21 16 15 44 44 H 1.08996 * 109.47442 * 69.88446 * 23 22 20 45 45 H 1.09002 * 109.47135 * 189.89515 * 23 22 20 46 46 H 1.08997 * 109.47225 * 60.00387 * 24 23 22 47 47 H 1.09000 * 109.47082 * 179.97438 * 24 23 22 48 48 H 1.08999 * 109.47542 * 300.00444 * 24 23 22 49 49 H 1.08999 * 110.77568 * 268.96562 * 25 22 20 50 50 H 1.08998 * 110.94179 * 145.60905 * 25 22 20 51 51 H 1.09004 * 110.74283 * 314.59368 * 26 19 18 52 52 H 1.09002 * 110.74236 * 77.91816 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0598 2.8219 -0.1230 6 6 5.4527 2.8462 -0.5890 7 6 5.5206 2.3141 -1.9974 8 1 4.6191 1.9898 -2.4962 9 6 6.7335 2.2402 -2.6486 10 7 6.7927 1.7763 -3.8778 11 14 8.2927 2.8003 -1.7857 12 1 8.8948 1.6542 -1.0583 13 1 9.2588 3.3111 -2.7912 14 1 7.9639 3.8809 -0.8216 15 6 3.9167 3.5472 1.1464 16 6 3.9563 5.0307 0.8846 17 6 2.8019 5.6956 0.5130 18 6 2.8385 7.0567 0.2700 19 6 4.0235 7.7504 0.3995 20 6 5.1880 7.0924 0.7766 21 6 5.1423 5.7209 1.0220 22 7 6.2641 7.9849 0.8566 23 6 6.5762 8.3093 2.2550 24 6 5.2942 8.7219 2.9810 25 6 5.9024 9.2020 0.0981 26 6 4.3595 9.2141 0.1944 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.8511 -0.8396 35 1 3.9330 1.0103 0.9332 36 1 5.8246 3.8707 -0.5695 37 1 6.0653 2.2247 0.0641 38 1 7.6461 1.7246 -4.3362 39 1 4.7332 3.2743 1.8148 40 1 2.9652 3.2852 1.6092 41 1 1.8736 5.1529 0.4124 42 1 1.9381 7.5768 -0.0217 43 1 6.0394 5.1965 1.3162 44 1 7.0052 7.4347 2.7439 45 1 7.2918 9.1309 2.2863 46 1 4.5785 7.9004 2.9497 47 1 5.5256 8.9622 4.0187 48 1 4.8651 9.5965 2.4921 49 1 6.2244 9.1205 -0.9401 50 1 6.3259 10.0917 0.5640 51 1 3.9178 9.5858 -0.7303 52 1 4.0306 9.8088 1.0467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249666723.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:08 Heat of formation + Delta-G solvation = 34.985620 kcal Electronic energy + Delta-G solvation = -27345.123011 eV Core-core repulsion = 23923.272138 eV Total energy + Delta-G solvation = -3421.850873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94146 -38.00828 -36.37529 -34.29092 -32.82291 -32.25450 -30.78160 -29.84885 -28.90970 -28.47531 -26.98900 -24.57057 -23.32256 -22.76545 -22.32493 -20.76554 -20.68348 -20.41248 -19.35770 -16.85827 -16.64568 -15.94711 -15.49113 -15.21419 -14.92325 -14.70368 -14.57892 -14.29741 -13.79615 -13.50397 -13.43537 -13.27918 -12.99197 -12.76624 -12.53210 -12.39165 -12.29551 -12.26407 -12.08802 -11.84096 -11.79262 -11.50684 -11.45913 -11.07198 -10.86939 -10.80029 -10.70070 -10.64240 -10.58958 -10.54712 -10.13963 -9.84523 -9.72879 -9.27632 -9.13447 -8.51319 -8.36500 -7.67092 -7.34857 -5.99186 -3.95367 1.58982 1.69373 3.33302 3.41601 3.46772 3.72470 3.92786 4.48837 4.61012 4.81370 4.84238 4.91098 4.93508 5.12704 5.18695 5.22170 5.26012 5.33726 5.34682 5.38699 5.43906 5.50143 5.52252 5.61062 5.66001 5.73966 5.76060 5.81404 5.83570 5.92861 5.97361 6.04109 6.07204 6.08662 6.13326 6.15967 6.20954 6.33382 6.37961 6.50133 6.59943 6.68907 6.73402 6.80238 6.86838 6.97394 7.01938 7.05781 7.09889 7.48638 7.69456 7.96672 8.11209 8.71851 9.09510 9.63480 11.13914 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.004785 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.821225 B = 5850.790276 C = 7971.934692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.059 3.941 5 N -0.520 5.520 6 C 0.160 3.840 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.901 5.901 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.264 1.264 15 C 0.088 3.912 16 C -0.042 4.042 17 C -0.107 4.107 18 C -0.093 4.093 19 C -0.146 4.146 20 C 0.091 3.909 21 C -0.099 4.099 22 N -0.493 5.493 23 C 0.053 3.947 24 C -0.192 4.192 25 C 0.050 3.950 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.018 0.982 36 H 0.035 0.965 37 H -0.020 1.020 38 H 0.262 0.738 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.088 0.912 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 11.431 13.686 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.069 4.069 5 N -0.243 5.243 6 C 0.034 3.966 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.541 5.541 11 Si 0.697 3.303 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.188 1.188 15 C -0.040 4.040 16 C -0.044 4.044 17 C -0.126 4.126 18 C -0.112 4.112 19 C -0.148 4.148 20 C -0.004 4.004 21 C -0.119 4.119 22 N -0.210 5.210 23 C -0.073 4.073 24 C -0.250 4.250 25 C -0.077 4.077 26 C -0.147 4.147 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.036 0.964 36 H 0.053 0.947 37 H -0.002 1.002 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.107 0.893 50 H 0.099 0.901 51 H 0.099 0.901 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.357 11.427 12.989 18.799 hybrid contribution 0.876 0.197 1.119 1.435 sum -6.481 11.624 14.108 19.395 Atomic orbital electron populations 1.21753 0.96398 1.00956 1.01530 1.21498 0.95238 0.97620 1.01889 1.21599 0.95999 0.95574 1.01784 1.22086 0.93942 0.90218 1.00615 1.61946 1.24057 1.13583 1.24726 1.20252 0.83509 0.96770 0.96106 1.21017 0.95273 1.41295 0.96693 0.90142 1.24864 0.98646 0.94945 0.94726 1.69894 1.25667 1.46884 1.11629 0.86932 0.83850 0.79572 0.79928 1.20516 1.21211 1.18820 1.21066 1.00557 0.89961 0.92391 1.19559 0.92453 0.95241 0.97103 1.20836 0.98303 0.93422 1.00049 1.20285 0.96313 0.94059 1.00536 1.20811 0.93987 0.95130 1.04920 1.19271 0.88833 0.92717 0.99615 1.20361 0.97821 0.91146 1.02579 1.60326 1.37721 1.11008 1.11926 1.22275 0.96933 1.01443 0.86621 1.22624 0.99340 1.02383 1.00701 1.23132 0.93365 0.91416 0.99796 1.21783 0.97020 0.93500 1.02418 0.92751 0.93283 0.93209 0.91739 0.92637 0.93196 0.91201 0.88976 0.96388 0.94715 1.00200 0.92785 0.94912 0.90754 0.85891 0.86667 0.86480 0.90443 0.90460 0.91834 0.92384 0.92087 0.89348 0.90110 0.90109 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.66 5.93 -26.73 -0.16 -1.82 16 3 C -0.11 -1.71 5.26 -26.74 -0.14 -1.85 16 4 C 0.06 1.11 4.79 -3.82 -0.02 1.09 16 5 N -0.52 -10.77 4.34 -237.52 -1.03 -11.80 16 6 C 0.16 3.94 3.61 -4.97 -0.02 3.92 16 7 C -0.50 -14.51 8.79 -34.44 -0.30 -14.81 16 8 H 0.08 2.51 7.56 -52.48 -0.40 2.11 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 11 Si 0.87 22.25 27.47 -169.99 -4.67 17.58 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 15 C 0.09 1.52 4.94 -4.98 -0.02 1.50 16 16 C -0.04 -0.72 5.02 -104.72 -0.53 -1.25 16 17 C -0.11 -1.66 9.73 -39.53 -0.38 -2.04 16 18 C -0.09 -1.33 10.03 -39.67 -0.40 -1.73 16 19 C -0.15 -2.11 5.39 -104.04 -0.56 -2.67 16 20 C 0.09 1.46 4.31 -83.41 -0.36 1.10 16 21 C -0.10 -1.74 8.42 -39.27 -0.33 -2.07 16 22 N -0.49 -7.04 5.33 -169.02 -0.90 -7.94 16 23 C 0.05 0.60 6.07 -3.82 -0.02 0.58 16 24 C -0.19 -1.96 8.68 37.16 0.32 -1.64 16 25 C 0.05 0.58 6.71 -2.43 -0.02 0.56 16 26 C -0.11 -1.23 6.19 -26.61 -0.16 -1.39 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.70 6.89 -51.93 -0.36 0.34 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.09 2.00 6.58 -51.93 -0.34 1.66 16 35 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 36 H 0.03 0.89 5.40 -51.93 -0.28 0.61 16 37 H -0.02 -0.49 7.55 -51.93 -0.39 -0.88 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.03 0.56 7.89 -51.93 -0.41 0.15 16 40 H 0.07 1.11 6.54 -51.93 -0.34 0.77 16 41 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.12 2.13 7.99 -52.49 -0.42 1.71 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 46 H 0.06 0.77 6.68 -51.93 -0.35 0.42 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.58 5.24 -51.93 -0.27 0.31 16 49 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.08 0.72 7.61 -51.93 -0.40 0.33 16 51 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.08 0.77 6.06 -51.93 -0.31 0.45 16 LS Contribution 394.78 15.07 5.95 5.95 Total: -1.00 -31.75 394.78 -12.04 -43.79 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -9.33 Total: 1.60 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.83 Total: -21.88 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -1.16 Total: -47.03 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.75 -12.04 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249666723.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.772 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds