Wall clock time and date at job start Tue Mar 31 2020 11:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47304 * 2 1 4 4 C 1.52995 * 109.47310 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.47264 * 174.87691 * 4 3 2 6 6 C 1.46901 * 110.99944 * 199.71123 * 5 4 3 7 7 C 1.50702 * 109.46845 * 66.04782 * 6 5 4 8 8 H 1.08004 * 120.00194 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99752 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00095 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00282 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46973 * 90.00077 * 11 9 7 13 13 H 1.48499 * 109.47355 * 210.00497 * 11 9 7 14 14 H 1.48505 * 109.46763 * 330.00344 * 11 9 7 15 15 C 1.46898 * 111.00060 * 75.75844 * 5 4 3 16 16 C 1.50693 * 109.47219 * 199.76181 * 15 5 4 17 17 C 1.38311 * 119.86692 * 84.41816 * 16 15 5 18 18 C 1.38307 * 119.87973 * 180.13116 * 17 16 15 19 19 C 1.37921 * 120.08085 * 359.92237 * 18 17 16 20 20 C 1.38963 * 120.48669 * 359.86312 * 19 18 17 21 21 C 1.37911 * 119.86986 * 264.14621 * 16 15 5 22 22 N 1.40034 * 110.96300 * 180.47881 * 20 19 18 23 23 C 1.46902 * 111.00026 * 103.50495 * 22 20 19 24 24 C 1.53002 * 109.46859 * 309.88444 * 23 22 20 25 25 C 1.47906 * 107.88866 * 341.68334 * 22 20 19 26 26 C 1.51579 * 131.56276 * 179.60489 * 19 18 17 27 27 H 1.08997 * 109.46819 * 59.99949 * 1 2 3 28 28 H 1.08996 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46892 * 300.00475 * 1 2 3 30 30 H 1.08998 * 109.46892 * 239.99524 * 2 1 3 31 31 H 1.09002 * 109.46812 * 119.99569 * 2 1 3 32 32 H 1.09003 * 109.47271 * 59.99515 * 3 2 1 33 33 H 1.08999 * 109.47013 * 300.00302 * 3 2 1 34 34 H 1.08996 * 109.47369 * 54.87505 * 4 3 2 35 35 H 1.09001 * 109.47273 * 294.87623 * 4 3 2 36 36 H 1.09000 * 109.47024 * 186.03910 * 6 5 4 37 37 H 1.09000 * 109.47226 * 306.04860 * 6 5 4 38 38 H 0.97002 * 120.00074 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.47147 * 79.76045 * 15 5 4 40 40 H 1.09001 * 109.46847 * 319.76027 * 15 5 4 41 41 H 1.07995 * 120.06019 * 0.11193 * 17 16 15 42 42 H 1.07998 * 119.95637 * 179.90679 * 18 17 16 43 43 H 1.07999 * 119.89609 * 0.03600 * 21 16 15 44 44 H 1.08996 * 109.47442 * 69.88446 * 23 22 20 45 45 H 1.09002 * 109.47135 * 189.89515 * 23 22 20 46 46 H 1.08997 * 109.47225 * 60.00387 * 24 23 22 47 47 H 1.09000 * 109.47082 * 179.97438 * 24 23 22 48 48 H 1.08999 * 109.47542 * 300.00444 * 24 23 22 49 49 H 1.08999 * 110.77568 * 268.96562 * 25 22 20 50 50 H 1.08998 * 110.94179 * 145.60905 * 25 22 20 51 51 H 1.09004 * 110.74283 * 314.59368 * 26 19 18 52 52 H 1.09002 * 110.74236 * 77.91816 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0598 2.8219 -0.1230 6 6 5.4527 2.8462 -0.5890 7 6 5.5206 2.3141 -1.9974 8 1 4.6191 1.9898 -2.4962 9 6 6.7335 2.2402 -2.6486 10 7 6.7927 1.7763 -3.8778 11 14 8.2927 2.8003 -1.7857 12 1 8.8948 1.6542 -1.0583 13 1 9.2588 3.3111 -2.7912 14 1 7.9639 3.8809 -0.8216 15 6 3.9167 3.5472 1.1464 16 6 3.9563 5.0307 0.8846 17 6 2.8019 5.6956 0.5130 18 6 2.8385 7.0567 0.2700 19 6 4.0235 7.7504 0.3995 20 6 5.1880 7.0924 0.7766 21 6 5.1423 5.7209 1.0220 22 7 6.2641 7.9849 0.8566 23 6 6.5762 8.3093 2.2550 24 6 5.2942 8.7219 2.9810 25 6 5.9024 9.2020 0.0981 26 6 4.3595 9.2141 0.1944 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.8511 -0.8396 35 1 3.9330 1.0103 0.9332 36 1 5.8246 3.8707 -0.5695 37 1 6.0653 2.2247 0.0641 38 1 7.6461 1.7246 -4.3362 39 1 4.7332 3.2743 1.8148 40 1 2.9652 3.2852 1.6092 41 1 1.8736 5.1529 0.4124 42 1 1.9381 7.5768 -0.0217 43 1 6.0394 5.1965 1.3162 44 1 7.0052 7.4347 2.7439 45 1 7.2918 9.1309 2.2863 46 1 4.5785 7.9004 2.9497 47 1 5.5256 8.9622 4.0187 48 1 4.8651 9.5965 2.4921 49 1 6.2244 9.1205 -0.9401 50 1 6.3259 10.0917 0.5640 51 1 3.9178 9.5858 -0.7303 52 1 4.0306 9.8088 1.0467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249666723.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:07 Heat of formation + Delta-G solvation = 16.342689 kcal Electronic energy + Delta-G solvation = -27345.931429 eV Core-core repulsion = 23923.272138 eV Total energy + Delta-G solvation = -3422.659291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99003 -39.41601 -37.63856 -35.60387 -34.62162 -33.63677 -31.81154 -31.12257 -30.49470 -29.53544 -28.46060 -25.98327 -24.45553 -24.15588 -23.46064 -22.13071 -21.87558 -21.65970 -20.72099 -19.01473 -17.69044 -17.06648 -16.74827 -16.57783 -16.31136 -16.12731 -15.94603 -15.57553 -15.41585 -14.80366 -14.54282 -14.46078 -14.19742 -14.07846 -13.90147 -13.80130 -13.48565 -13.35712 -13.22782 -13.15557 -12.94884 -12.78592 -12.67526 -12.44960 -12.37758 -12.18663 -11.99789 -11.87730 -11.86249 -11.77488 -11.57337 -11.50082 -11.29950 -11.22915 -10.79931 -10.29341 -9.57286 -9.01498 -8.75298 -8.30175 -6.30936 0.41957 0.50103 1.26914 1.31175 1.41898 2.30826 2.70398 2.74806 3.03628 3.37539 3.66226 3.86490 3.96902 4.04083 4.06623 4.08666 4.13831 4.21426 4.29726 4.31734 4.37258 4.43097 4.50716 4.54718 4.60037 4.66480 4.70153 4.74239 4.74834 4.81993 4.84006 4.90317 4.92895 4.97977 5.03840 5.06350 5.08058 5.12756 5.22364 5.24248 5.29487 5.34588 5.47462 5.50229 5.55539 5.56087 5.56989 5.73072 5.86117 6.01513 6.07008 6.36350 6.41976 6.64971 6.74661 7.31847 8.86423 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.004785 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.821225 B = 5850.790276 C = 7971.934692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.099 4.099 4 C 0.061 3.939 5 N -0.532 5.532 6 C 0.175 3.825 7 C -0.507 4.507 8 H 0.041 0.959 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.936 3.064 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.258 1.258 15 C 0.093 3.907 16 C -0.061 4.061 17 C -0.116 4.116 18 C -0.094 4.094 19 C -0.150 4.150 20 C 0.082 3.918 21 C -0.126 4.126 22 N -0.518 5.518 23 C 0.052 3.948 24 C -0.183 4.183 25 C 0.047 3.953 26 C -0.102 4.102 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.026 0.974 37 H -0.023 1.023 38 H 0.266 0.734 39 H 0.031 0.969 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.039 0.961 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.112 0.888 51 H 0.093 0.907 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 13.709 15.756 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.137 4.137 4 C -0.067 4.067 5 N -0.255 5.255 6 C 0.048 3.952 7 C -0.545 4.545 8 H 0.059 0.941 9 C -0.184 4.184 10 N -0.586 5.586 11 Si 0.760 3.240 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.183 1.183 15 C -0.034 4.034 16 C -0.062 4.062 17 C -0.135 4.135 18 C -0.113 4.113 19 C -0.153 4.153 20 C -0.014 4.014 21 C -0.146 4.146 22 N -0.236 5.236 23 C -0.073 4.073 24 C -0.241 4.241 25 C -0.079 4.079 26 C -0.139 4.139 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.044 0.956 37 H -0.005 1.005 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.119 0.881 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.115 0.885 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.059 0.941 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.130 0.870 51 H 0.112 0.888 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.204 13.706 15.078 21.966 hybrid contribution 1.098 -0.496 0.456 1.288 sum -7.107 13.210 15.534 21.594 Atomic orbital electron populations 1.21713 0.94361 1.02062 1.02032 1.21482 0.96974 0.95986 1.01634 1.21495 0.93097 0.97161 1.01978 1.22076 0.96368 0.88842 0.99404 1.61863 1.21364 1.14937 1.27338 1.19905 0.86119 0.95489 0.93691 1.21230 0.93942 1.40804 0.98553 0.94081 1.25699 1.02181 0.95132 0.95385 1.70032 1.26754 1.48511 1.13321 0.85877 0.79590 0.79563 0.78955 1.19085 1.20573 1.18265 1.21110 1.01798 0.89980 0.90546 1.19599 0.93103 0.95022 0.98508 1.21050 0.98201 0.94279 0.99951 1.20635 0.97451 0.93739 0.99447 1.21261 0.93399 0.96964 1.03659 1.19457 0.90250 0.92482 0.99232 1.20366 0.97421 0.92316 1.04533 1.60291 1.37464 1.12058 1.13768 1.22343 0.98029 1.01704 0.85220 1.22524 0.98059 1.01803 1.01717 1.23250 0.93911 0.91489 0.99261 1.21832 0.96651 0.91483 1.03965 0.93156 0.91932 0.91792 0.93479 0.91499 0.90890 0.92915 0.92949 0.95136 0.95631 1.00490 0.92516 0.95115 0.88080 0.84570 0.83871 0.88487 0.91828 0.88143 0.94143 0.90725 0.90868 0.90484 0.87012 0.88816 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.91 71.98 0.71 -2.29 16 2 C -0.12 -3.19 5.93 30.59 0.18 -3.01 16 3 C -0.10 -3.01 5.26 30.59 0.16 -2.85 16 4 C 0.06 2.34 4.79 86.30 0.41 2.75 16 5 N -0.53 -22.50 4.34 -905.38 -3.93 -26.43 16 6 C 0.18 8.89 3.61 85.56 0.31 9.20 16 7 C -0.51 -30.50 8.79 25.60 0.22 -30.27 16 8 H 0.04 2.73 7.56 -2.91 -0.02 2.71 16 9 C 0.01 0.81 5.47 84.65 0.46 1.28 16 10 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 11 Si 0.94 46.98 27.47 68.60 1.88 48.86 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 14 H -0.26 -12.66 6.54 99.48 0.65 -12.01 16 15 C 0.09 3.19 4.94 85.56 0.42 3.61 16 16 C -0.06 -2.09 5.02 -19.93 -0.10 -2.19 16 17 C -0.12 -3.46 9.73 22.30 0.22 -3.24 16 18 C -0.09 -2.51 10.03 22.21 0.22 -2.29 16 19 C -0.15 -4.07 5.39 -19.49 -0.10 -4.17 16 20 C 0.08 2.57 4.31 38.28 0.16 2.74 16 21 C -0.13 -4.51 8.42 22.47 0.19 -4.32 16 22 N -0.52 -14.18 5.33 -688.66 -3.67 -17.85 16 23 C 0.05 1.10 6.07 86.30 0.52 1.62 16 24 C -0.18 -3.29 8.68 71.98 0.62 -2.67 16 25 C 0.05 0.97 6.71 86.65 0.58 1.56 16 26 C -0.10 -1.97 6.19 30.67 0.19 -1.78 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.88 6.89 -2.39 -0.02 1.86 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 2.41 6.58 -2.39 -0.02 2.40 16 35 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 36 H 0.03 1.35 5.40 -2.39 -0.01 1.34 16 37 H -0.02 -1.14 7.55 -2.39 -0.02 -1.16 16 38 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 39 H 0.03 1.06 7.89 -2.39 -0.02 1.04 16 40 H 0.10 2.86 6.54 -2.39 -0.02 2.84 16 41 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.10 3.72 7.99 -2.91 -0.02 3.70 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.10 1.61 7.85 -2.39 -0.02 1.59 16 46 H 0.04 0.92 6.68 -2.39 -0.02 0.91 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 48 H 0.07 1.12 5.24 -2.39 -0.01 1.11 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.11 1.58 7.61 -2.39 -0.02 1.56 16 51 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 52 H 0.10 1.54 6.06 -2.39 -0.01 1.52 16 Total: -1.00 -72.11 394.78 0.79 -71.32 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.81 Total: 20.99 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 5.40 Total: -36.33 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -7.30 Total: -104.84 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.88 Total: 48.86 kcal Total: -72.11 0.79 -71.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249666723.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.663 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds