Wall clock time and date at job start Tue Mar 31 2020 11:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.53001 * 109.46870 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.46912 * 177.50431 * 4 3 2 6 6 C 1.46897 * 111.00117 * 64.94223 * 5 4 3 7 7 C 1.50710 * 109.47109 * 66.05072 * 6 5 4 8 8 H 1.08004 * 119.99444 * 359.97438 * 7 6 5 9 9 C 1.37867 * 120.00215 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00011 * 0.26856 * 9 7 6 11 11 Si 1.86804 * 120.00216 * 179.97438 * 9 7 6 12 12 H 1.48491 * 109.46992 * 59.99541 * 11 9 7 13 13 H 1.48493 * 109.47207 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46719 * 299.99620 * 11 9 7 15 15 C 1.46901 * 110.99737 * 300.99266 * 5 4 3 16 16 H 1.08995 * 110.27452 * 67.86390 * 15 5 4 17 17 C 1.54601 * 110.30897 * 305.77417 * 15 5 4 18 18 C 1.55105 * 102.84425 * 219.18914 * 17 15 5 19 19 N 1.48524 * 103.28609 * 37.30484 * 18 17 15 20 20 C 1.46895 * 111.00219 * 200.33222 * 19 18 17 21 21 C 1.50697 * 109.47456 * 287.40016 * 20 19 18 22 22 C 1.38236 * 119.99799 * 269.72974 * 21 20 19 23 23 C 1.38231 * 120.00104 * 179.78580 * 22 21 20 24 24 C 1.38241 * 119.99971 * 0.45937 * 23 22 21 25 25 C 1.38231 * 119.99523 * 359.76718 * 24 23 22 26 26 C 1.38232 * 120.00494 * 0.02563 * 25 24 23 27 27 C 1.47905 * 105.82264 * 320.84959 * 19 18 17 28 28 H 1.09004 * 109.47508 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47234 * 299.99376 * 1 2 3 30 30 H 1.09000 * 109.47386 * 60.00007 * 1 2 3 31 31 H 1.09006 * 109.46900 * 240.00145 * 2 1 3 32 32 H 1.09000 * 109.47657 * 120.00471 * 2 1 3 33 33 H 1.08997 * 109.47029 * 60.00454 * 3 2 1 34 34 H 1.09000 * 109.46985 * 300.00239 * 3 2 1 35 35 H 1.08993 * 109.47630 * 57.50258 * 4 3 2 36 36 H 1.09002 * 109.47244 * 297.49660 * 4 3 2 37 37 H 1.08996 * 109.47584 * 306.04676 * 6 5 4 38 38 H 1.09001 * 109.47196 * 186.04455 * 6 5 4 39 39 H 0.97001 * 120.00345 * 359.73123 * 10 9 7 40 40 H 1.08999 * 110.72101 * 337.48519 * 17 15 5 41 41 H 1.08994 * 110.72221 * 100.76758 * 17 15 5 42 42 H 1.09002 * 110.58743 * 278.87309 * 18 17 15 43 43 H 1.08998 * 110.82743 * 155.85140 * 18 17 15 44 44 H 1.09003 * 109.47078 * 47.39663 * 20 19 18 45 45 H 1.09006 * 109.47923 * 167.39366 * 20 19 18 46 46 H 1.08000 * 119.99862 * 359.97438 * 22 21 20 47 47 H 1.07998 * 120.00636 * 180.24491 * 23 22 21 48 48 H 1.07997 * 120.00094 * 179.79090 * 24 23 22 49 49 H 1.08001 * 119.99621 * 180.02562 * 25 24 23 50 50 H 1.08002 * 120.00307 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.91351 * 265.97770 * 27 19 18 52 52 H 1.08995 * 109.92244 * 144.68653 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8262 -0.0610 6 6 3.6880 3.5694 1.1504 7 6 4.4083 2.9858 2.3386 8 1 5.0751 2.1464 2.2070 9 6 4.2153 3.5226 3.5937 10 7 3.3985 4.5408 3.7549 11 14 5.1075 2.7988 5.0667 12 1 6.5739 2.8988 4.8553 13 1 4.7320 3.5501 6.2912 14 1 4.7263 1.3722 5.2242 15 6 3.5688 3.5061 -1.2671 16 1 2.4904 3.6522 -1.2058 17 6 3.9286 2.6878 -2.5284 18 6 4.3179 3.7859 -3.5524 19 7 5.0278 4.7914 -2.7212 20 6 5.0531 6.1010 -3.3862 21 6 6.0167 6.0579 -4.5441 22 6 7.3436 6.3943 -4.3519 23 6 8.2285 6.3505 -5.4130 24 6 7.7844 5.9795 -6.6684 25 6 6.4565 5.6476 -6.8616 26 6 5.5726 5.6872 -5.7996 27 6 4.2823 4.8591 -1.4456 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.8905 -0.8675 36 1 3.9337 0.9678 0.9107 37 1 2.6117 3.4960 1.3059 38 1 3.9678 4.6165 1.0344 39 1 2.9349 4.9165 2.9902 40 1 4.7732 2.0274 -2.3317 41 1 3.0668 2.1198 -2.8785 42 1 3.4269 4.2210 -4.0051 43 1 4.9802 3.3837 -4.3190 44 1 4.0552 6.3416 -3.7528 45 1 5.3727 6.8634 -2.6757 46 1 7.6897 6.6884 -3.3720 47 1 9.2660 6.6095 -5.2620 48 1 8.4750 5.9485 -7.4982 49 1 6.1096 5.3573 -7.8423 50 1 4.5350 5.4283 -5.9506 51 1 3.5479 5.6635 -1.4870 52 1 4.9736 5.0261 -0.6197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255115636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:25 Heat of formation + Delta-G solvation = 21.740786 kcal Electronic energy + Delta-G solvation = -26920.971842 eV Core-core repulsion = 23498.546630 eV Total energy + Delta-G solvation = -3422.425212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.76639 -38.81558 -36.71564 -34.07665 -33.12771 -32.05050 -30.97547 -29.85554 -28.89242 -27.47449 -25.93916 -24.78261 -23.37825 -22.63877 -21.63550 -21.45637 -21.03209 -20.49870 -18.75642 -16.93248 -16.56987 -16.05864 -15.91378 -15.31398 -15.16265 -14.97094 -14.29937 -13.99777 -13.82185 -13.65468 -13.51371 -13.43085 -13.14857 -12.93580 -12.64636 -12.50431 -12.17898 -12.02479 -11.87041 -11.50601 -11.40630 -11.17024 -11.07072 -11.02611 -10.90406 -10.78566 -10.77435 -10.62564 -10.54180 -10.47188 -10.11250 -10.02077 -9.83199 -8.98638 -8.85986 -8.61028 -8.33946 -8.22219 -7.21286 -6.33115 -4.01176 1.26604 1.33975 3.46326 3.48852 3.64759 3.66910 4.28514 4.53626 4.65549 4.75893 4.82737 4.90339 4.96825 4.97731 5.08633 5.23276 5.23767 5.26017 5.39038 5.42472 5.43864 5.45333 5.55122 5.58882 5.61995 5.72310 5.85111 5.85920 5.93079 5.96908 6.00262 6.02904 6.05237 6.09829 6.17799 6.23666 6.35379 6.37123 6.39605 6.42916 6.47925 6.50081 6.58272 6.67802 6.86642 6.92208 7.05065 7.11919 7.17402 7.18624 7.87641 8.04543 8.37315 8.63354 8.91071 9.68615 11.05800 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.003287 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.322263 B = 8516.594510 C =10217.296482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.155 4.155 4 C 0.066 3.934 5 N -0.516 5.516 6 C 0.179 3.821 7 C -0.582 4.582 8 H 0.056 0.944 9 C 0.014 3.986 10 N -0.916 5.916 11 Si 1.069 2.931 12 H -0.287 1.287 13 H -0.284 1.284 14 H -0.289 1.289 15 C 0.075 3.925 16 H 0.036 0.964 17 C -0.115 4.115 18 C 0.038 3.962 19 N -0.503 5.503 20 C 0.082 3.918 21 C -0.068 4.068 22 C -0.098 4.098 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.115 4.115 27 C 0.046 3.954 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.082 0.918 37 H -0.016 1.016 38 H 0.019 0.981 39 H 0.265 0.735 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.116 0.884 51 H 0.036 0.964 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 -0.308 -19.224 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.194 4.194 4 C -0.063 4.063 5 N -0.239 5.239 6 C 0.054 3.946 7 C -0.621 4.621 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.553 5.553 11 Si 0.898 3.102 12 H -0.214 1.214 13 H -0.209 1.209 14 H -0.216 1.216 15 C -0.035 4.035 16 H 0.054 0.946 17 C -0.153 4.153 18 C -0.090 4.090 19 N -0.227 5.227 20 C -0.046 4.046 21 C -0.069 4.069 22 C -0.117 4.117 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.081 4.081 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.002 0.998 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.134 0.866 51 H 0.054 0.946 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.670 -0.287 -17.489 17.694 hybrid contribution -2.020 0.210 -1.803 2.716 sum 0.650 -0.077 -19.292 19.303 Atomic orbital electron populations 1.21768 0.96579 1.00866 1.01544 1.21428 0.95207 0.97425 1.01535 1.22245 0.99038 0.96363 1.01726 1.22068 0.91324 0.91094 1.01779 1.62392 1.57960 1.01758 1.01751 1.19880 0.93925 0.93702 0.87138 1.21946 1.28855 1.18597 0.92691 0.92588 1.25785 0.96934 0.95532 1.00673 1.70804 1.26993 1.23135 1.34357 0.83528 0.75721 0.75420 0.75538 1.21385 1.20950 1.21553 1.22364 0.95687 0.93519 0.91953 0.94622 1.22609 1.01385 0.97377 0.93930 1.23250 0.96103 0.93445 0.96210 1.64796 1.49240 1.05394 1.03253 1.21235 0.96433 0.92758 0.94194 1.19762 0.94676 0.98374 0.94040 1.21080 0.92717 0.98937 0.98939 1.21153 0.99569 1.00203 0.93039 1.21112 0.95841 1.00214 0.97228 1.21075 0.93745 1.00646 0.98684 1.21036 0.99579 1.00077 0.92624 1.22965 0.96563 0.96007 0.92598 0.93271 0.92786 0.93317 0.92680 0.91952 0.91267 0.93159 0.92641 0.89935 0.99816 0.96269 0.92447 0.89665 0.91858 0.94493 0.90391 0.94020 0.89896 0.85855 0.86187 0.86420 0.86382 0.86577 0.94555 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.15 -2.67 4.56 -26.73 -0.12 -2.79 16 4 C 0.07 1.25 4.80 -3.82 -0.02 1.23 16 5 N -0.52 -10.83 4.47 -226.45 -1.01 -11.84 16 6 C 0.18 4.49 3.66 -4.97 -0.02 4.47 16 7 C -0.58 -16.25 8.45 -34.44 -0.29 -16.54 16 8 H 0.06 1.58 7.13 -52.48 -0.37 1.20 16 9 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 10 N -0.92 -27.70 13.65 55.43 0.76 -26.94 16 11 Si 1.07 25.38 29.90 -169.99 -5.08 20.29 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.07 1.32 2.03 -66.35 -0.13 1.18 16 16 H 0.04 0.65 6.73 -51.93 -0.35 0.30 16 17 C -0.11 -1.70 5.49 -24.78 -0.14 -1.83 16 18 C 0.04 0.51 5.68 -1.81 -0.01 0.50 16 19 N -0.50 -7.57 5.23 -231.79 -1.21 -8.78 16 20 C 0.08 1.05 4.86 -4.98 -0.02 1.02 16 21 C -0.07 -0.82 5.16 -104.63 -0.54 -1.36 16 22 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.13 -1.22 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 26 C -0.11 -1.25 8.83 -39.59 -0.35 -1.59 16 27 C 0.05 0.80 5.75 -2.75 -0.02 0.78 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.42 6.52 -51.93 -0.34 1.08 16 34 H 0.05 0.83 6.43 -51.93 -0.33 0.50 16 35 H 0.06 0.94 6.58 -51.93 -0.34 0.60 16 36 H 0.08 1.75 6.74 -51.93 -0.35 1.41 16 37 H -0.02 -0.41 6.08 -51.93 -0.32 -0.73 16 38 H 0.02 0.51 6.38 -51.93 -0.33 0.18 16 39 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 40 H 0.08 1.37 7.29 -51.93 -0.38 0.99 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.46 7.81 -51.93 -0.41 0.05 16 43 H 0.08 1.01 7.84 -51.93 -0.41 0.60 16 44 H 0.04 0.50 7.77 -51.93 -0.40 0.10 16 45 H 0.08 1.05 8.02 -51.93 -0.42 0.63 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 51 H 0.04 0.59 7.77 -51.93 -0.40 0.19 16 52 H 0.10 1.98 6.83 -51.93 -0.35 1.62 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -30.10 397.26 -12.94 -43.04 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -9.25 Total: 2.75 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -3.12 Total: -24.49 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -1.47 Total: -47.57 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.10 -12.94 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255115636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.779 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds