Wall clock time and date at job start Tue Mar 31 2020 11:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.53001 * 109.46870 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.46912 * 177.50431 * 4 3 2 6 6 C 1.46897 * 111.00117 * 64.94223 * 5 4 3 7 7 C 1.50710 * 109.47109 * 66.05072 * 6 5 4 8 8 H 1.08004 * 119.99444 * 359.97438 * 7 6 5 9 9 C 1.37867 * 120.00215 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00011 * 0.26856 * 9 7 6 11 11 Si 1.86804 * 120.00216 * 179.97438 * 9 7 6 12 12 H 1.48491 * 109.46992 * 59.99541 * 11 9 7 13 13 H 1.48493 * 109.47207 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46719 * 299.99620 * 11 9 7 15 15 C 1.46901 * 110.99737 * 300.99266 * 5 4 3 16 16 H 1.08995 * 110.27452 * 67.86390 * 15 5 4 17 17 C 1.54601 * 110.30897 * 305.77417 * 15 5 4 18 18 C 1.55105 * 102.84425 * 219.18914 * 17 15 5 19 19 N 1.48524 * 103.28609 * 37.30484 * 18 17 15 20 20 C 1.46895 * 111.00219 * 200.33222 * 19 18 17 21 21 C 1.50697 * 109.47456 * 287.40016 * 20 19 18 22 22 C 1.38236 * 119.99799 * 269.72974 * 21 20 19 23 23 C 1.38231 * 120.00104 * 179.78580 * 22 21 20 24 24 C 1.38241 * 119.99971 * 0.45937 * 23 22 21 25 25 C 1.38231 * 119.99523 * 359.76718 * 24 23 22 26 26 C 1.38232 * 120.00494 * 0.02563 * 25 24 23 27 27 C 1.47905 * 105.82264 * 320.84959 * 19 18 17 28 28 H 1.09004 * 109.47508 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47234 * 299.99376 * 1 2 3 30 30 H 1.09000 * 109.47386 * 60.00007 * 1 2 3 31 31 H 1.09006 * 109.46900 * 240.00145 * 2 1 3 32 32 H 1.09000 * 109.47657 * 120.00471 * 2 1 3 33 33 H 1.08997 * 109.47029 * 60.00454 * 3 2 1 34 34 H 1.09000 * 109.46985 * 300.00239 * 3 2 1 35 35 H 1.08993 * 109.47630 * 57.50258 * 4 3 2 36 36 H 1.09002 * 109.47244 * 297.49660 * 4 3 2 37 37 H 1.08996 * 109.47584 * 306.04676 * 6 5 4 38 38 H 1.09001 * 109.47196 * 186.04455 * 6 5 4 39 39 H 0.97001 * 120.00345 * 359.73123 * 10 9 7 40 40 H 1.08999 * 110.72101 * 337.48519 * 17 15 5 41 41 H 1.08994 * 110.72221 * 100.76758 * 17 15 5 42 42 H 1.09002 * 110.58743 * 278.87309 * 18 17 15 43 43 H 1.08998 * 110.82743 * 155.85140 * 18 17 15 44 44 H 1.09003 * 109.47078 * 47.39663 * 20 19 18 45 45 H 1.09006 * 109.47923 * 167.39366 * 20 19 18 46 46 H 1.08000 * 119.99862 * 359.97438 * 22 21 20 47 47 H 1.07998 * 120.00636 * 180.24491 * 23 22 21 48 48 H 1.07997 * 120.00094 * 179.79090 * 24 23 22 49 49 H 1.08001 * 119.99621 * 180.02562 * 25 24 23 50 50 H 1.08002 * 120.00307 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.91351 * 265.97770 * 27 19 18 52 52 H 1.08995 * 109.92244 * 144.68653 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8262 -0.0610 6 6 3.6880 3.5694 1.1504 7 6 4.4083 2.9858 2.3386 8 1 5.0751 2.1464 2.2070 9 6 4.2153 3.5226 3.5937 10 7 3.3985 4.5408 3.7549 11 14 5.1075 2.7988 5.0667 12 1 6.5739 2.8988 4.8553 13 1 4.7320 3.5501 6.2912 14 1 4.7263 1.3722 5.2242 15 6 3.5688 3.5061 -1.2671 16 1 2.4904 3.6522 -1.2058 17 6 3.9286 2.6878 -2.5284 18 6 4.3179 3.7859 -3.5524 19 7 5.0278 4.7914 -2.7212 20 6 5.0531 6.1010 -3.3862 21 6 6.0167 6.0579 -4.5441 22 6 7.3436 6.3943 -4.3519 23 6 8.2285 6.3505 -5.4130 24 6 7.7844 5.9795 -6.6684 25 6 6.4565 5.6476 -6.8616 26 6 5.5726 5.6872 -5.7996 27 6 4.2823 4.8591 -1.4456 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.8905 -0.8675 36 1 3.9337 0.9678 0.9107 37 1 2.6117 3.4960 1.3059 38 1 3.9678 4.6165 1.0344 39 1 2.9349 4.9165 2.9902 40 1 4.7732 2.0274 -2.3317 41 1 3.0668 2.1198 -2.8785 42 1 3.4269 4.2210 -4.0051 43 1 4.9802 3.3837 -4.3190 44 1 4.0552 6.3416 -3.7528 45 1 5.3727 6.8634 -2.6757 46 1 7.6897 6.6884 -3.3720 47 1 9.2660 6.6095 -5.2620 48 1 8.4750 5.9485 -7.4982 49 1 6.1096 5.3573 -7.8423 50 1 4.5350 5.4283 -5.9506 51 1 3.5479 5.6635 -1.4870 52 1 4.9736 5.0261 -0.6197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255115636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:24 Heat of formation + Delta-G solvation = 4.759793 kcal Electronic energy + Delta-G solvation = -26921.708193 eV Core-core repulsion = 23498.546630 eV Total energy + Delta-G solvation = -3423.161563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91910 -39.91619 -38.08270 -35.57134 -34.81936 -33.36418 -31.76189 -31.03575 -30.19441 -29.12050 -27.40927 -26.09320 -25.14027 -23.49784 -23.15733 -22.48569 -22.33997 -21.58372 -20.29247 -18.68239 -17.84661 -17.47525 -17.04471 -16.42465 -16.13978 -16.06989 -15.91377 -15.60515 -15.16934 -15.08233 -14.74569 -14.33187 -14.23450 -14.16700 -14.06315 -13.66198 -13.56705 -13.40233 -13.15663 -12.91619 -12.90334 -12.60331 -12.49076 -12.39403 -12.19166 -12.05838 -12.01319 -11.95224 -11.82946 -11.78699 -11.73261 -11.53609 -11.34958 -10.71745 -10.54177 -9.78448 -9.71472 -9.36499 -8.95192 -8.63996 -6.33639 0.45017 0.54306 1.51907 1.60419 1.79492 2.55945 2.75648 3.14477 3.18690 3.24349 3.58587 3.74215 3.90330 3.92841 3.97878 3.99375 4.17979 4.19242 4.25023 4.26917 4.31871 4.34189 4.37822 4.47416 4.58446 4.60781 4.68789 4.70039 4.72827 4.77554 4.78836 4.85704 4.89772 4.92323 5.01792 5.04785 5.08280 5.13341 5.13938 5.16179 5.20609 5.30331 5.38330 5.45190 5.58601 5.65249 5.72504 5.81585 5.92291 6.01643 6.06874 6.16233 6.46328 6.48509 6.72161 7.45351 8.74008 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.003287 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.322263 B = 8516.594510 C =10217.296482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.068 3.932 5 N -0.527 5.527 6 C 0.197 3.803 7 C -0.591 4.591 8 H 0.050 0.950 9 C -0.037 4.037 10 N -0.940 5.940 11 Si 1.116 2.884 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.073 3.927 16 H 0.032 0.968 17 C -0.105 4.105 18 C 0.046 3.954 19 N -0.515 5.515 20 C 0.085 3.915 21 C -0.084 4.084 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.120 4.120 27 C 0.053 3.947 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.054 0.946 37 H -0.037 1.037 38 H -0.004 1.004 39 H 0.252 0.748 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.144 0.856 50 H 0.129 0.871 51 H 0.039 0.961 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 -1.938 -22.034 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.182 4.182 4 C -0.060 4.060 5 N -0.250 5.250 6 C 0.070 3.930 7 C -0.629 4.629 8 H 0.068 0.932 9 C -0.234 4.234 10 N -0.578 5.578 11 Si 0.938 3.062 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.195 1.195 15 C -0.037 4.037 16 H 0.050 0.950 17 C -0.143 4.143 18 C -0.082 4.082 19 N -0.239 5.239 20 C -0.043 4.043 21 C -0.085 4.085 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.075 4.075 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.072 0.928 37 H -0.019 1.019 38 H 0.014 0.986 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.162 0.838 50 H 0.147 0.853 51 H 0.058 0.942 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.933 -1.928 -20.338 20.638 hybrid contribution -2.060 0.748 -1.037 2.425 sum 0.873 -1.180 -21.375 21.425 Atomic orbital electron populations 1.21746 0.95236 1.02231 1.01288 1.21413 0.96385 0.95113 1.02285 1.22094 0.97631 0.98281 1.00163 1.22069 0.92532 0.89824 1.01595 1.62298 1.58730 1.02612 1.01346 1.19493 0.92117 0.92809 0.88578 1.22259 1.28509 1.18208 0.93917 0.93157 1.27278 0.96939 0.95189 1.04001 1.70930 1.28497 1.24587 1.33762 0.82941 0.75424 0.75648 0.72218 1.19739 1.20977 1.19488 1.22447 0.95300 0.94163 0.91757 0.95034 1.22574 1.01909 0.97402 0.92417 1.23254 0.96897 0.92364 0.95652 1.64736 1.49253 1.07083 1.02874 1.21213 0.97371 0.91372 0.94319 1.19735 0.94550 0.99886 0.94294 1.21188 0.93267 1.00011 0.99317 1.21406 1.00216 0.99994 0.93089 1.21477 0.96443 0.99010 0.97546 1.21424 0.93639 0.99722 0.99495 1.21219 1.00512 0.99863 0.92269 1.22729 0.95746 0.96086 0.92927 0.91082 0.94370 0.92306 0.90219 0.92861 0.95437 0.92017 0.89732 0.92786 1.01939 0.98570 0.93899 0.90667 0.89401 0.92672 0.89210 0.92955 0.90880 0.86695 0.84610 0.83881 0.83838 0.85321 0.94240 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.91 71.98 0.71 -2.84 16 2 C -0.11 -3.12 5.93 30.59 0.18 -2.94 16 3 C -0.14 -4.94 4.56 30.60 0.14 -4.80 16 4 C 0.07 2.58 4.80 86.30 0.41 2.99 16 5 N -0.53 -22.84 4.47 -870.36 -3.89 -26.73 16 6 C 0.20 10.44 3.66 85.56 0.31 10.76 16 7 C -0.59 -34.28 8.45 25.60 0.22 -34.06 16 8 H 0.05 2.92 7.13 -2.91 -0.02 2.90 16 9 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 10 N -0.94 -59.03 13.65 21.44 0.29 -58.74 16 11 Si 1.12 51.68 29.90 68.60 2.05 53.73 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 C 0.07 2.59 2.03 45.80 0.09 2.68 16 16 H 0.03 1.16 6.73 -2.39 -0.02 1.14 16 17 C -0.10 -2.89 5.49 31.86 0.17 -2.72 16 18 C 0.05 1.13 5.68 86.71 0.49 1.62 16 19 N -0.52 -15.41 5.23 -887.25 -4.64 -20.05 16 20 C 0.08 2.16 4.86 85.56 0.42 2.57 16 21 C -0.08 -1.96 5.16 -19.87 -0.10 -2.07 16 22 C -0.12 -2.78 9.70 22.27 0.22 -2.57 16 23 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 24 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 25 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 26 C -0.12 -2.33 8.83 22.27 0.20 -2.14 16 27 C 0.05 1.91 5.75 86.44 0.50 2.40 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.03 1.17 6.52 -2.39 -0.02 1.15 16 34 H 0.06 1.98 6.43 -2.39 -0.02 1.96 16 35 H 0.08 2.73 6.58 -2.39 -0.02 2.71 16 36 H 0.05 2.35 6.74 -2.39 -0.02 2.34 16 37 H -0.04 -2.09 6.08 -2.39 -0.01 -2.10 16 38 H 0.00 -0.21 6.38 -2.39 -0.02 -0.22 16 39 H 0.25 16.06 7.22 -92.71 -0.67 15.39 16 40 H 0.07 2.26 7.29 -2.39 -0.02 2.24 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 1.18 7.81 -2.39 -0.02 1.17 16 43 H 0.09 2.06 7.84 -2.39 -0.02 2.04 16 44 H 0.05 1.20 7.77 -2.39 -0.02 1.18 16 45 H 0.07 1.95 8.02 -2.38 -0.02 1.93 16 46 H 0.11 2.74 8.06 -2.91 -0.02 2.72 16 47 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 48 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 49 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 50 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 51 H 0.04 1.34 7.77 -2.39 -0.02 1.32 16 52 H 0.06 2.51 6.83 -2.39 -0.02 2.50 16 Total: -1.00 -68.24 397.26 -0.14 -68.37 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.96 Total: 22.22 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 5.09 Total: -38.81 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -8.24 Total: -105.52 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.73 kcal Total: -68.24 -0.14 -68.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255115636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.133 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds