Wall clock time and date at job start Tue Mar 31 2020 11:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46906 * 2 1 4 4 C 1.52998 * 109.47267 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47311 * 185.13544 * 4 3 2 6 6 C 1.46893 * 110.99786 * 165.34107 * 5 4 3 7 7 C 1.50703 * 109.47122 * 293.95317 * 6 5 4 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00248 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99914 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46829 * 59.99711 * 11 9 7 13 13 H 1.48497 * 109.47124 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47020 * 300.00056 * 11 9 7 15 15 C 1.46903 * 110.99907 * 289.29414 * 5 4 3 16 16 H 1.08996 * 110.28633 * 52.41227 * 15 5 4 17 17 C 1.54261 * 110.32185 * 174.54480 * 15 5 4 18 18 C 1.54381 * 105.06197 * 118.89502 * 17 15 5 19 19 N 1.48563 * 104.59376 * 23.85245 * 18 17 15 20 20 C 1.46901 * 111.00027 * 200.96306 * 19 18 17 21 21 C 1.50707 * 109.46602 * 290.12645 * 20 19 18 22 22 C 1.38234 * 119.99667 * 269.72584 * 21 20 19 23 23 C 1.38234 * 120.00011 * 179.76814 * 22 21 20 24 24 C 1.38235 * 119.99912 * 0.48511 * 23 22 21 25 25 C 1.38242 * 119.99997 * 359.78765 * 24 23 22 26 26 C 1.38228 * 120.00219 * 90.00071 * 21 20 19 27 27 C 1.48729 * 104.28699 * 320.57444 * 19 18 17 28 28 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47376 * 299.99777 * 1 2 3 30 30 H 1.08995 * 109.47688 * 59.99837 * 1 2 3 31 31 H 1.08998 * 109.46768 * 240.00807 * 2 1 3 32 32 H 1.08998 * 109.47263 * 119.99860 * 2 1 3 33 33 H 1.09002 * 109.47482 * 300.00588 * 3 2 1 34 34 H 1.08996 * 109.47095 * 60.00102 * 3 2 1 35 35 H 1.09003 * 109.47153 * 305.13925 * 4 3 2 36 36 H 1.09002 * 109.46681 * 65.13811 * 4 3 2 37 37 H 1.09005 * 109.47407 * 53.95309 * 6 5 4 38 38 H 1.08998 * 109.47043 * 173.95420 * 6 5 4 39 39 H 0.97000 * 120.00025 * 180.02562 * 10 9 7 40 40 H 1.08995 * 110.31924 * 237.79218 * 17 15 5 41 41 H 1.08997 * 110.32264 * 359.89444 * 17 15 5 42 42 H 1.09002 * 110.40659 * 142.62618 * 18 17 15 43 43 H 1.08997 * 110.41219 * 264.95454 * 18 17 15 44 44 H 1.08997 * 109.46842 * 50.11769 * 20 19 18 45 45 H 1.08992 * 109.47050 * 170.12868 * 20 19 18 46 46 H 1.08001 * 120.00187 * 359.97438 * 22 21 20 47 47 H 1.08003 * 120.00157 * 180.24725 * 23 22 21 48 48 H 1.07992 * 120.00258 * 179.76806 * 24 23 22 49 49 H 1.07992 * 119.99995 * 179.97438 * 25 24 23 50 50 H 1.08000 * 120.00119 * 359.97438 * 26 21 20 51 51 H 1.09002 * 110.38718 * 280.64008 * 27 19 18 52 52 H 1.09001 * 110.50784 * 158.15365 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8221 0.1233 6 6 5.4861 2.8448 0.4732 7 6 5.6737 2.2722 1.8546 8 1 4.8187 1.9257 2.4161 9 6 6.9367 2.1908 2.4013 10 7 7.9779 2.6123 1.7173 11 14 7.1694 1.4804 4.1133 12 1 6.6761 0.0800 4.1393 13 1 8.6114 1.5035 4.4671 14 1 6.4054 2.2926 5.0942 15 6 3.8073 3.5829 -1.1077 16 1 2.7578 3.5052 -1.3916 17 6 4.2020 5.0615 -0.9141 18 6 5.3129 5.3197 -1.9546 19 7 5.0869 4.2945 -3.0058 20 6 6.3056 4.0725 -3.7953 21 6 6.5804 5.2854 -4.6466 22 6 6.0535 5.3685 -5.9219 23 6 6.3015 6.4831 -6.7010 24 6 7.0848 7.5101 -6.2085 25 6 7.6164 7.4246 -4.9353 26 6 7.3640 6.3122 -4.1543 27 6 4.7110 3.0702 -2.2496 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.9336 0.8510 0.8395 36 1 3.9328 1.0107 -0.9333 37 1 6.0463 2.2480 -0.2466 38 1 5.8486 3.8725 0.4536 39 1 8.8665 2.5547 2.1018 40 1 3.3467 5.7097 -1.1047 41 1 4.5812 5.2231 0.0949 42 1 5.2160 6.3214 -2.3734 43 1 6.2958 5.1915 -1.5011 44 1 7.1472 3.9016 -3.1241 45 1 6.1695 3.2018 -4.4366 46 1 5.4452 4.5640 -6.3083 47 1 5.8865 6.5498 -7.6958 48 1 7.2817 8.3792 -6.8186 49 1 8.2287 8.2267 -4.5508 50 1 7.7791 6.2455 -3.1595 51 1 5.5995 2.5870 -1.8434 52 1 4.1608 2.3802 -2.8893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255115637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:29 Heat of formation + Delta-G solvation = 23.945664 kcal Electronic energy + Delta-G solvation = -27052.246237 eV Core-core repulsion = 23629.916636 eV Total energy + Delta-G solvation = -3422.329602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.70494 -38.73754 -36.24321 -34.28370 -32.81444 -31.99213 -30.87219 -29.79879 -28.55418 -28.03364 -25.95495 -24.91414 -22.97002 -22.56031 -21.95851 -21.34622 -20.69266 -20.31378 -18.52194 -16.80190 -16.55769 -15.87118 -15.48763 -15.11649 -14.98057 -14.93982 -14.62901 -14.05997 -13.82163 -13.53398 -13.40441 -13.30442 -13.05542 -12.81053 -12.54969 -12.46540 -12.07921 -12.02177 -11.87649 -11.51988 -11.27372 -11.08752 -10.97358 -10.90762 -10.82821 -10.77518 -10.73291 -10.63712 -10.46016 -10.35931 -10.18761 -9.95151 -9.52209 -9.21391 -8.88678 -8.76944 -8.44786 -8.13678 -7.19540 -6.05331 -4.05926 1.36954 1.43559 3.31382 3.35726 3.38661 3.75818 4.36643 4.45271 4.78963 4.84927 4.91469 5.01361 5.11938 5.16075 5.23630 5.27788 5.30218 5.34778 5.42350 5.48339 5.53312 5.64763 5.70289 5.73272 5.77623 5.84648 5.94712 6.03392 6.04748 6.05079 6.07551 6.09170 6.13439 6.21251 6.28642 6.35689 6.41431 6.46739 6.49221 6.51740 6.58338 6.62094 6.70304 6.76759 6.85986 7.01857 7.11659 7.26839 7.31179 7.37442 7.80024 8.10895 8.21730 8.55941 9.01832 9.58212 11.05284 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010155 B = 0.003757 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.497954 B = 7450.009763 C = 9670.931257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.061 3.939 5 N -0.527 5.527 6 C 0.191 3.809 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.084 3.916 16 H 0.078 0.922 17 C -0.117 4.117 18 C 0.035 3.965 19 N -0.502 5.502 20 C 0.078 3.922 21 C -0.067 4.067 22 C -0.102 4.102 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.111 4.111 27 C -0.005 4.005 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.018 0.982 37 H -0.009 1.009 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.062 0.938 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 4.196 -13.261 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.067 4.067 5 N -0.250 5.250 6 C 0.066 3.934 7 C -0.546 4.546 8 H 0.080 0.920 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.026 4.026 16 H 0.096 0.904 17 C -0.155 4.155 18 C -0.093 4.093 19 N -0.225 5.225 20 C -0.050 4.050 21 C -0.067 4.067 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.130 4.130 27 C -0.135 4.135 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.037 0.963 37 H 0.009 0.991 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.080 0.920 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.682 4.587 -13.222 15.509 hybrid contribution 1.470 -0.992 0.732 1.919 sum -5.212 3.594 -12.490 14.003 Atomic orbital electron populations 1.21757 0.96414 1.00919 1.01568 1.21496 0.95218 0.97709 1.01775 1.21619 0.96276 0.95469 1.01785 1.22001 0.93495 0.90893 1.00316 1.62378 1.21770 1.12063 1.28832 1.19758 0.81108 0.97136 0.95373 1.21148 0.92634 1.40325 1.00521 0.91956 1.24957 0.95948 0.95731 0.97787 1.69939 0.98774 1.47498 1.37633 0.86604 0.76868 0.79610 0.84603 1.20310 1.21404 1.20157 1.22395 0.98126 0.93704 0.88360 0.90373 1.22361 0.97689 0.95708 0.99724 1.23128 0.98467 0.96039 0.91695 1.65465 1.29685 1.06896 1.20498 1.21221 0.92590 0.95075 0.96118 1.19784 0.96578 0.95869 0.94470 1.21011 0.99029 0.98139 0.93880 1.21104 0.99161 0.94254 0.99741 1.21097 0.98553 0.98799 0.96065 1.21112 1.00253 0.98035 0.94566 1.21155 0.98398 0.93641 0.99798 1.23944 1.00588 0.92906 0.96025 0.93319 0.92835 0.93101 0.92571 0.91991 0.92979 0.91462 0.89811 0.96337 0.99116 0.94834 0.92940 0.91801 0.89544 0.90906 0.93406 0.93288 0.90322 0.86181 0.86384 0.86489 0.86271 0.86126 0.91958 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.11 -1.74 5.15 -26.73 -0.14 -1.88 16 4 C 0.06 1.15 4.72 -3.82 -0.02 1.13 16 5 N -0.53 -10.84 4.42 -226.43 -1.00 -11.84 16 6 C 0.19 4.73 3.83 -4.98 -0.02 4.71 16 7 C -0.51 -13.86 8.30 -34.44 -0.29 -14.15 16 8 H 0.06 1.70 7.24 -52.49 -0.38 1.32 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 11 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.08 1.49 3.01 -66.33 -0.20 1.29 16 16 H 0.08 1.31 6.55 -51.93 -0.34 0.97 16 17 C -0.12 -2.00 6.01 -25.35 -0.15 -2.15 16 18 C 0.03 0.57 5.44 -2.18 -0.01 0.56 16 19 N -0.50 -7.99 5.36 -231.26 -1.24 -9.23 16 20 C 0.08 1.15 4.97 -4.97 -0.02 1.13 16 21 C -0.07 -0.90 5.10 -104.62 -0.53 -1.44 16 22 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 26 C -0.11 -1.46 8.73 -39.59 -0.35 -1.81 16 27 C -0.01 -0.09 4.89 -2.09 -0.01 -0.10 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.76 6.81 -51.93 -0.35 0.41 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.76 6.59 -51.93 -0.34 1.41 16 36 H 0.02 0.34 7.20 -51.93 -0.37 -0.03 16 37 H -0.01 -0.23 6.23 -51.93 -0.32 -0.56 16 38 H 0.03 0.89 6.19 -51.93 -0.32 0.57 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.68 6.63 -51.93 -0.34 1.33 16 42 H 0.07 1.12 7.81 -51.93 -0.41 0.71 16 43 H 0.05 0.87 7.82 -51.93 -0.41 0.47 16 44 H 0.05 0.79 7.83 -51.93 -0.41 0.39 16 45 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 50 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 51 H 0.06 1.25 5.41 -51.93 -0.28 0.97 16 52 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -28.54 399.34 -13.04 -41.58 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -9.33 Total: 3.70 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.20 Total: -21.23 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -1.50 Total: -46.43 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.54 -13.04 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255115637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.525 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds