Wall clock time and date at job start Tue Mar 31 2020 11:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46906 * 2 1 4 4 C 1.52998 * 109.47267 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47311 * 185.13544 * 4 3 2 6 6 C 1.46893 * 110.99786 * 165.34107 * 5 4 3 7 7 C 1.50703 * 109.47122 * 293.95317 * 6 5 4 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00248 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99914 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46829 * 59.99711 * 11 9 7 13 13 H 1.48497 * 109.47124 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47020 * 300.00056 * 11 9 7 15 15 C 1.46903 * 110.99907 * 289.29414 * 5 4 3 16 16 H 1.08996 * 110.28633 * 52.41227 * 15 5 4 17 17 C 1.54261 * 110.32185 * 174.54480 * 15 5 4 18 18 C 1.54381 * 105.06197 * 118.89502 * 17 15 5 19 19 N 1.48563 * 104.59376 * 23.85245 * 18 17 15 20 20 C 1.46901 * 111.00027 * 200.96306 * 19 18 17 21 21 C 1.50707 * 109.46602 * 290.12645 * 20 19 18 22 22 C 1.38234 * 119.99667 * 269.72584 * 21 20 19 23 23 C 1.38234 * 120.00011 * 179.76814 * 22 21 20 24 24 C 1.38235 * 119.99912 * 0.48511 * 23 22 21 25 25 C 1.38242 * 119.99997 * 359.78765 * 24 23 22 26 26 C 1.38228 * 120.00219 * 90.00071 * 21 20 19 27 27 C 1.48729 * 104.28699 * 320.57444 * 19 18 17 28 28 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47376 * 299.99777 * 1 2 3 30 30 H 1.08995 * 109.47688 * 59.99837 * 1 2 3 31 31 H 1.08998 * 109.46768 * 240.00807 * 2 1 3 32 32 H 1.08998 * 109.47263 * 119.99860 * 2 1 3 33 33 H 1.09002 * 109.47482 * 300.00588 * 3 2 1 34 34 H 1.08996 * 109.47095 * 60.00102 * 3 2 1 35 35 H 1.09003 * 109.47153 * 305.13925 * 4 3 2 36 36 H 1.09002 * 109.46681 * 65.13811 * 4 3 2 37 37 H 1.09005 * 109.47407 * 53.95309 * 6 5 4 38 38 H 1.08998 * 109.47043 * 173.95420 * 6 5 4 39 39 H 0.97000 * 120.00025 * 180.02562 * 10 9 7 40 40 H 1.08995 * 110.31924 * 237.79218 * 17 15 5 41 41 H 1.08997 * 110.32264 * 359.89444 * 17 15 5 42 42 H 1.09002 * 110.40659 * 142.62618 * 18 17 15 43 43 H 1.08997 * 110.41219 * 264.95454 * 18 17 15 44 44 H 1.08997 * 109.46842 * 50.11769 * 20 19 18 45 45 H 1.08992 * 109.47050 * 170.12868 * 20 19 18 46 46 H 1.08001 * 120.00187 * 359.97438 * 22 21 20 47 47 H 1.08003 * 120.00157 * 180.24725 * 23 22 21 48 48 H 1.07992 * 120.00258 * 179.76806 * 24 23 22 49 49 H 1.07992 * 119.99995 * 179.97438 * 25 24 23 50 50 H 1.08000 * 120.00119 * 359.97438 * 26 21 20 51 51 H 1.09002 * 110.38718 * 280.64008 * 27 19 18 52 52 H 1.09001 * 110.50784 * 158.15365 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8221 0.1233 6 6 5.4861 2.8448 0.4732 7 6 5.6737 2.2722 1.8546 8 1 4.8187 1.9257 2.4161 9 6 6.9367 2.1908 2.4013 10 7 7.9779 2.6123 1.7173 11 14 7.1694 1.4804 4.1133 12 1 6.6761 0.0800 4.1393 13 1 8.6114 1.5035 4.4671 14 1 6.4054 2.2926 5.0942 15 6 3.8073 3.5829 -1.1077 16 1 2.7578 3.5052 -1.3916 17 6 4.2020 5.0615 -0.9141 18 6 5.3129 5.3197 -1.9546 19 7 5.0869 4.2945 -3.0058 20 6 6.3056 4.0725 -3.7953 21 6 6.5804 5.2854 -4.6466 22 6 6.0535 5.3685 -5.9219 23 6 6.3015 6.4831 -6.7010 24 6 7.0848 7.5101 -6.2085 25 6 7.6164 7.4246 -4.9353 26 6 7.3640 6.3122 -4.1543 27 6 4.7110 3.0702 -2.2496 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.9336 0.8510 0.8395 36 1 3.9328 1.0107 -0.9333 37 1 6.0463 2.2480 -0.2466 38 1 5.8486 3.8725 0.4536 39 1 8.8665 2.5547 2.1018 40 1 3.3467 5.7097 -1.1047 41 1 4.5812 5.2231 0.0949 42 1 5.2160 6.3214 -2.3734 43 1 6.2958 5.1915 -1.5011 44 1 7.1472 3.9016 -3.1241 45 1 6.1695 3.2018 -4.4366 46 1 5.4452 4.5640 -6.3083 47 1 5.8865 6.5498 -7.6958 48 1 7.2817 8.3792 -6.8186 49 1 8.2287 8.2267 -4.5508 50 1 7.7791 6.2455 -3.1595 51 1 5.5995 2.5870 -1.8434 52 1 4.1608 2.3802 -2.8893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255115637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:27 Heat of formation + Delta-G solvation = 8.515995 kcal Electronic energy + Delta-G solvation = -27052.915318 eV Core-core repulsion = 23629.916636 eV Total energy + Delta-G solvation = -3422.998682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00097 -39.89254 -37.64082 -35.60788 -34.66930 -33.35161 -31.77814 -31.01557 -30.14593 -29.53557 -27.52734 -26.25453 -24.64931 -23.49369 -23.42251 -22.52619 -21.90839 -21.58415 -20.08981 -18.66671 -17.64457 -17.28826 -16.90114 -16.59722 -16.19009 -16.14201 -16.06851 -15.50535 -15.33815 -14.90733 -14.58226 -14.30609 -14.24666 -14.20291 -13.96909 -13.75873 -13.48532 -13.30911 -13.11407 -13.01703 -12.82068 -12.67300 -12.53280 -12.38457 -12.22306 -12.14595 -11.92694 -11.86473 -11.81538 -11.78949 -11.60289 -11.42839 -11.25677 -11.05044 -10.60045 -9.82353 -9.77012 -9.48250 -8.92923 -8.21012 -6.29946 0.43085 0.52394 1.38319 1.40813 1.48616 2.38295 2.74182 3.08797 3.12740 3.37894 3.64386 3.76313 3.91587 3.98841 4.04811 4.16102 4.19282 4.25161 4.29324 4.31572 4.34880 4.37310 4.47389 4.54694 4.56221 4.65182 4.68166 4.75856 4.78918 4.85273 4.87839 4.93455 5.00155 5.05446 5.10490 5.12797 5.14946 5.18725 5.21113 5.24186 5.37970 5.39207 5.52178 5.56946 5.57269 5.63135 5.64155 5.68048 5.78416 5.91260 6.09735 6.14119 6.39846 6.71041 6.87344 7.39365 8.89196 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010155 B = 0.003757 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.497954 B = 7450.009763 C = 9670.931257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.101 4.101 4 C 0.064 3.936 5 N -0.532 5.532 6 C 0.214 3.786 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.962 3.038 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.084 3.916 16 H 0.102 0.898 17 C -0.114 4.114 18 C 0.044 3.956 19 N -0.490 5.490 20 C 0.082 3.918 21 C -0.084 4.084 22 C -0.109 4.109 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.131 4.131 27 C 0.003 3.997 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.018 0.982 37 H -0.039 1.039 38 H 0.008 0.992 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.017 0.983 44 H 0.021 0.979 45 H 0.089 0.911 46 H 0.131 0.869 47 H 0.147 0.853 48 H 0.147 0.853 49 H 0.136 0.864 50 H 0.105 0.895 51 H 0.025 0.975 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 4.655 -14.787 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.139 4.139 4 C -0.064 4.064 5 N -0.255 5.255 6 C 0.088 3.912 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.193 4.193 10 N -0.574 5.574 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.026 4.026 16 H 0.120 0.880 17 C -0.152 4.152 18 C -0.084 4.084 19 N -0.214 5.214 20 C -0.046 4.046 21 C -0.085 4.085 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.037 0.963 37 H -0.021 1.021 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.108 0.892 46 H 0.149 0.851 47 H 0.165 0.835 48 H 0.165 0.835 49 H 0.154 0.846 50 H 0.123 0.877 51 H 0.044 0.956 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.692 5.044 -14.756 17.853 hybrid contribution 2.113 -1.093 1.124 2.631 sum -6.579 3.951 -13.632 15.644 Atomic orbital electron populations 1.21716 0.94407 1.02045 1.02030 1.21477 0.96905 0.95922 1.01694 1.21512 0.93088 0.97253 1.02015 1.22005 0.96043 0.89345 0.99034 1.62327 1.18722 1.13549 1.30932 1.19301 0.83407 0.94626 0.93835 1.21483 0.92784 1.40336 1.01583 0.92181 1.25826 0.95602 0.95994 1.01855 1.70078 0.99200 1.48617 1.39475 0.85544 0.76936 0.79174 0.79648 1.19322 1.20952 1.19365 1.22517 0.99330 0.93488 0.87248 0.88038 1.22345 0.98619 0.95991 0.98283 1.23007 0.96701 0.96984 0.91669 1.65524 1.30248 1.05933 1.19647 1.21192 0.90990 0.96672 0.95757 1.19695 0.98090 0.95454 0.95230 1.21194 0.99086 0.99213 0.93272 1.21470 0.98473 0.93398 1.00706 1.21488 0.97381 0.99629 0.95677 1.21365 1.00368 0.97731 0.95009 1.21172 0.99290 0.94764 0.99742 1.23813 0.99100 0.93515 0.96236 0.91918 0.92819 0.92199 0.92022 0.92830 0.91554 0.92248 0.92630 0.96330 1.02144 0.97413 0.92887 0.89107 0.92377 0.89378 0.96497 0.96051 0.89249 0.85097 0.83490 0.83516 0.84575 0.87705 0.95636 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.91 71.98 0.71 -2.16 16 2 C -0.12 -3.03 5.93 30.59 0.18 -2.85 16 3 C -0.10 -2.98 5.15 30.59 0.16 -2.82 16 4 C 0.06 2.43 4.72 86.30 0.41 2.84 16 5 N -0.53 -22.64 4.42 -870.28 -3.85 -26.48 16 6 C 0.21 11.30 3.83 85.56 0.33 11.63 16 7 C -0.52 -29.79 8.30 25.60 0.21 -29.58 16 8 H 0.06 3.37 7.24 -2.91 -0.02 3.35 16 9 C 0.01 0.30 5.46 84.65 0.46 0.76 16 10 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 11 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 15 C 0.08 2.98 3.01 45.81 0.14 3.12 16 16 H 0.10 3.19 6.55 -2.39 -0.02 3.17 16 17 C -0.11 -3.98 6.01 31.49 0.19 -3.79 16 18 C 0.04 1.52 5.44 86.45 0.47 1.99 16 19 N -0.49 -15.89 5.36 -885.56 -4.75 -20.64 16 20 C 0.08 2.53 4.97 85.56 0.43 2.95 16 21 C -0.08 -2.30 5.10 -19.87 -0.10 -2.40 16 22 C -0.11 -2.49 9.70 22.27 0.22 -2.28 16 23 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 24 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 25 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 26 C -0.13 -3.53 8.73 22.27 0.19 -3.34 16 27 C 0.00 0.10 4.89 86.42 0.42 0.53 16 28 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.78 6.81 -2.39 -0.02 1.76 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 2.42 6.59 -2.39 -0.02 2.40 16 36 H 0.02 0.70 7.20 -2.39 -0.02 0.68 16 37 H -0.04 -2.26 6.23 -2.38 -0.01 -2.27 16 38 H 0.01 0.45 6.19 -2.39 -0.01 0.43 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.06 2.37 6.63 -2.39 -0.02 2.35 16 42 H 0.09 2.73 7.81 -2.39 -0.02 2.72 16 43 H 0.02 0.67 7.82 -2.39 -0.02 0.65 16 44 H 0.02 0.77 7.83 -2.39 -0.02 0.75 16 45 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 46 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 47 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 48 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 49 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 50 H 0.10 3.05 8.06 -2.91 -0.02 3.03 16 51 H 0.03 1.10 5.41 -2.39 -0.01 1.09 16 52 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -64.44 399.34 -0.34 -64.77 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.86 Total: 23.90 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 5.09 Total: -32.07 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -8.31 Total: -103.35 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.44 -0.34 -64.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255115637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.290 kcal (2) G-P(sol) polarization free energy of solvation -64.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds