Wall clock time and date at job start Tue Mar 31 2020 11:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47562 * 2 1 4 4 H 1.08999 * 109.46672 * 37.34851 * 3 2 1 5 5 C 1.50697 * 109.47195 * 157.34584 * 3 2 1 6 6 H 1.08000 * 119.99839 * 119.99980 * 5 3 2 7 7 C 1.37872 * 120.00260 * 299.99900 * 5 3 2 8 8 N 1.31516 * 120.00413 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99864 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47276 * 89.99910 * 9 7 5 11 11 H 1.48504 * 109.47030 * 209.99385 * 9 7 5 12 12 H 1.48491 * 109.47200 * 329.99859 * 9 7 5 13 13 N 1.46894 * 109.47000 * 277.35060 * 3 2 1 14 14 C 1.46902 * 111.00593 * 86.84881 * 13 3 2 15 15 H 1.08996 * 109.46720 * 323.60730 * 14 13 3 16 16 C 1.52999 * 109.46731 * 83.60474 * 14 13 3 17 17 C 1.50699 * 109.47501 * 295.00207 * 16 14 13 18 18 C 1.38238 * 119.99769 * 269.72766 * 17 16 14 19 19 C 1.38234 * 119.99608 * 179.75932 * 18 17 16 20 20 C 1.38237 * 120.00099 * 0.51597 * 19 18 17 21 21 C 1.38237 * 119.99694 * 359.74279 * 20 19 18 22 22 C 1.38228 * 119.99776 * 89.99904 * 17 16 14 23 23 C 1.52996 * 109.47215 * 203.60869 * 14 13 3 24 24 N 1.46905 * 109.47380 * 51.76370 * 23 14 13 25 25 C 1.48535 * 111.00031 * 59.34720 * 24 23 14 26 26 C 1.54938 * 103.22731 * 159.72092 * 25 24 23 27 27 C 1.54600 * 102.91877 * 322.58914 * 26 25 24 28 28 C 1.47896 * 110.99929 * 176.74377 * 24 23 14 29 29 H 1.09001 * 109.47353 * 181.28143 * 1 2 3 30 30 H 1.08997 * 109.47095 * 301.28264 * 1 2 3 31 31 H 1.09005 * 109.46815 * 61.28221 * 1 2 3 32 32 H 1.09003 * 109.47261 * 239.99522 * 2 1 3 33 33 H 1.09005 * 109.47011 * 120.00336 * 2 1 3 34 34 H 0.96998 * 120.00366 * 180.02562 * 8 7 5 35 35 H 1.00901 * 110.99841 * 210.80855 * 13 3 2 36 36 H 1.09006 * 109.46192 * 175.00290 * 16 14 13 37 37 H 1.08994 * 109.46902 * 55.00708 * 16 14 13 38 38 H 1.07994 * 120.00279 * 0.02562 * 18 17 16 39 39 H 1.07998 * 120.00431 * 180.23130 * 19 18 17 40 40 H 1.07995 * 120.00617 * 179.71573 * 20 19 18 41 41 H 1.08009 * 119.99980 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.00470 * 0.02562 * 22 17 16 43 43 H 1.09001 * 109.46686 * 171.76333 * 23 14 13 44 44 H 1.08998 * 109.47354 * 291.76057 * 23 14 13 45 45 H 1.08996 * 110.66848 * 278.16127 * 25 24 23 46 46 H 1.09001 * 110.66769 * 41.28559 * 25 24 23 47 47 H 1.08993 * 110.72276 * 204.22855 * 26 25 24 48 48 H 1.09000 * 110.72035 * 80.94296 * 26 25 24 49 49 H 1.08999 * 110.30318 * 263.03610 * 27 26 25 50 50 H 1.09001 * 110.30522 * 140.87837 * 27 26 25 51 51 H 1.09001 * 109.91748 * 333.50774 * 28 24 23 52 52 H 1.09000 * 109.91789 * 94.60666 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3910 2.0573 0.6235 5 6 3.4437 1.4789 0.5472 6 1 4.2522 1.8516 -0.0642 7 6 3.6958 1.0365 1.8285 8 7 4.9207 1.0688 2.3063 9 14 2.2976 0.3913 2.8859 10 1 2.1524 -1.0716 2.6757 11 1 2.5945 0.6587 4.3162 12 1 1.0345 1.0736 2.5065 13 7 2.0363 1.9632 -1.3736 14 6 0.7278 2.5367 -1.7157 15 1 -0.0609 1.9448 -1.2512 16 6 0.6530 3.9768 -1.2046 17 6 0.7078 3.9790 0.3014 18 6 -0.4613 3.9081 1.0356 19 6 -0.4107 3.9051 2.4171 20 6 0.8083 3.9837 3.0642 21 6 1.9770 4.0600 2.3299 22 6 1.9267 4.0575 0.9484 23 6 0.5471 2.5245 -3.2349 24 7 0.8139 1.1744 -3.7490 25 6 -0.1067 0.1810 -3.1390 26 6 -0.0570 -1.0059 -4.1337 27 6 0.0254 -0.3021 -5.5077 28 6 0.5732 1.1052 -5.2066 29 1 -0.3634 -1.0274 0.0230 30 1 -0.3633 0.5336 0.8782 31 1 -0.3633 0.4938 -0.9013 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.0982 0.7572 3.2076 35 1 2.7733 2.6394 -1.5059 36 1 -0.2812 4.4313 -1.5349 37 1 1.4939 4.5467 -1.5997 38 1 -1.4139 3.8508 0.5301 39 1 -1.3238 3.8460 2.9908 40 1 0.8476 3.9860 4.1435 41 1 2.9294 4.1218 2.8355 42 1 2.8398 4.1177 0.3748 43 1 -0.4750 2.8118 -3.4814 44 1 1.2425 3.2302 -3.6892 45 1 0.2535 -0.1248 -2.1568 46 1 -1.1172 0.5840 -3.0709 47 1 -0.9632 -1.6072 -4.0620 48 1 0.8281 -1.6178 -3.9600 49 1 -0.9649 -0.2343 -5.9579 50 1 0.7059 -0.8398 -6.1679 51 1 -0.1584 1.8587 -5.4984 52 1 1.5070 1.2664 -5.7452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:35 Heat of formation + Delta-G solvation = 50.082025 kcal Electronic energy + Delta-G solvation = -29308.624157 eV Core-core repulsion = 25887.427913 eV Total energy + Delta-G solvation = -3421.196244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.67799 -38.54082 -36.49014 -34.07426 -31.90432 -31.82027 -30.55787 -30.12416 -29.04284 -28.18237 -26.05494 -25.03022 -22.64145 -22.04701 -21.49251 -20.82144 -20.44668 -19.78541 -19.61197 -16.69217 -16.37389 -15.92888 -15.76824 -15.30562 -14.72086 -14.53430 -14.20776 -13.98140 -13.71918 -13.44259 -13.13182 -12.84619 -12.79146 -12.66040 -12.48468 -12.35960 -12.06755 -11.96357 -11.63253 -11.58144 -11.35039 -11.28720 -11.10910 -10.84813 -10.62718 -10.50876 -10.44121 -10.43470 -10.32398 -10.26952 -9.91395 -9.65205 -9.21658 -8.87680 -8.50760 -8.25528 -8.16054 -7.95500 -6.96338 -6.01073 -3.97335 1.92074 2.04374 3.33817 3.44201 3.50374 4.22047 4.41670 4.48630 4.80773 4.87285 5.02651 5.09669 5.20318 5.32965 5.36183 5.42579 5.46897 5.54647 5.57580 5.60525 5.70137 5.75053 5.79190 5.86751 5.88384 5.95420 6.00242 6.02652 6.03081 6.09760 6.13790 6.16587 6.21136 6.28380 6.33296 6.38736 6.46628 6.60255 6.65026 6.74429 6.93927 6.98401 7.02054 7.07801 7.16615 7.24237 7.27685 7.41949 7.60843 7.61446 7.76500 8.14183 8.54597 8.76619 9.06238 9.64368 11.11204 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.005739 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.722837 B = 4877.513685 C = 5724.897368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.121 4.121 3 C 0.170 3.830 4 H 0.035 0.965 5 C -0.503 4.503 6 H 0.074 0.926 7 C 0.080 3.920 8 N -0.902 5.902 9 Si 0.870 3.130 10 H -0.286 1.286 11 H -0.303 1.303 12 H -0.252 1.252 13 N -0.649 5.649 14 C 0.081 3.919 15 H 0.083 0.917 16 C -0.108 4.108 17 C -0.083 4.083 18 C -0.128 4.128 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.103 4.103 22 C -0.064 4.064 23 C 0.061 3.939 24 N -0.482 5.482 25 C 0.018 3.982 26 C -0.125 4.125 27 C -0.129 4.129 28 C 0.032 3.968 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.261 0.739 35 H 0.334 0.666 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.029 0.971 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.033 0.967 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 3.663 -8.881 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.159 4.159 3 C 0.062 3.938 4 H 0.052 0.948 5 C -0.541 4.541 6 H 0.092 0.908 7 C -0.122 4.122 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.214 1.214 11 H -0.231 1.231 12 H -0.176 1.176 13 N -0.279 5.279 14 C -0.031 4.031 15 H 0.101 0.899 16 C -0.148 4.148 17 C -0.083 4.083 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.121 4.121 22 C -0.082 4.082 23 C -0.068 4.068 24 N -0.205 5.205 25 C -0.109 4.109 26 C -0.163 4.163 27 C -0.167 4.167 28 C -0.096 4.096 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.041 0.959 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.052 0.948 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.883 2.903 -8.895 15.124 hybrid contribution -1.509 0.374 1.120 1.916 sum -13.392 3.277 -7.775 15.828 Atomic orbital electron populations 1.22425 0.99331 0.99910 1.01354 1.21978 0.92216 1.00849 1.00866 1.20005 0.97352 0.90912 0.85545 0.94759 1.21063 0.92413 1.42097 0.98513 0.90772 1.24792 0.94726 0.95185 0.97489 1.69898 1.19257 1.48019 1.16869 0.87120 0.84763 0.79190 0.78825 1.21363 1.23087 1.17643 1.60529 1.01335 1.38965 1.27058 1.21891 0.95983 0.91997 0.93195 0.89909 1.21351 1.02101 0.99239 0.92068 1.19648 0.93398 1.00249 0.95026 1.20779 0.97216 1.02723 0.93883 1.20878 0.97271 1.02253 0.94475 1.21031 0.93011 1.01564 0.99271 1.21064 0.97839 0.98686 0.94468 1.20981 0.96904 0.95721 0.94554 1.22290 0.97692 0.90822 0.95987 1.64724 1.49402 1.04685 1.01681 1.23786 0.93842 0.92328 1.00975 1.22483 1.01809 0.97701 0.94270 1.22367 1.00388 0.96068 0.97909 1.22898 0.99657 0.95968 0.91099 0.94470 0.93743 0.91427 0.91667 0.93429 0.92962 0.84787 0.91889 0.91093 0.87344 0.87274 0.87229 0.86271 0.85633 0.95862 0.91169 0.86818 0.95287 0.91845 0.90620 0.92262 0.91399 0.94841 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 8.12 37.16 0.30 -2.90 16 2 C -0.12 -2.63 4.36 -26.73 -0.12 -2.75 16 3 C 0.17 3.69 0.61 -68.87 -0.04 3.65 16 4 H 0.04 0.76 2.78 -51.93 -0.14 0.62 16 5 C -0.50 -13.06 7.71 -34.44 -0.27 -13.33 16 6 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 7 C 0.08 2.19 5.42 -17.82 -0.10 2.10 16 8 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 9 Si 0.87 21.95 23.98 -169.99 -4.08 17.87 16 10 H -0.29 -7.33 6.78 56.52 0.38 -6.94 16 11 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.25 -6.11 5.82 56.52 0.33 -5.78 16 13 N -0.65 -12.18 5.58 -100.96 -0.56 -12.75 16 14 C 0.08 1.26 1.72 -67.71 -0.12 1.14 16 15 H 0.08 1.38 4.17 -51.93 -0.22 1.16 16 16 C -0.11 -1.56 4.82 -27.88 -0.13 -1.70 16 17 C -0.08 -1.39 3.36 -104.63 -0.35 -1.74 16 18 C -0.13 -2.06 9.63 -39.58 -0.38 -2.44 16 19 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 20 C -0.13 -2.31 10.05 -39.58 -0.40 -2.70 16 21 C -0.10 -1.96 9.58 -39.58 -0.38 -2.34 16 22 C -0.06 -1.18 5.93 -39.59 -0.23 -1.42 16 23 C 0.06 0.85 4.54 -3.82 -0.02 0.83 16 24 N -0.48 -7.02 4.99 -230.46 -1.15 -8.17 16 25 C 0.02 0.25 4.77 -1.90 -0.01 0.24 16 26 C -0.12 -1.53 7.06 -24.87 -0.18 -1.71 16 27 C -0.13 -1.41 6.93 -25.37 -0.18 -1.59 16 28 C 0.03 0.39 6.70 -2.76 -0.02 0.37 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.86 7.39 -51.93 -0.38 0.47 16 31 H 0.07 1.13 2.72 -51.93 -0.14 0.99 16 32 H 0.06 1.44 7.50 -51.93 -0.39 1.05 16 33 H 0.05 1.15 3.67 -51.93 -0.19 0.96 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.33 6.47 7.86 -39.29 -0.31 6.16 16 36 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.12 2.34 8.06 -52.48 -0.42 1.91 16 42 H 0.13 2.43 7.63 -52.49 -0.40 2.03 16 43 H 0.02 0.30 7.99 -51.93 -0.41 -0.12 16 44 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 45 H 0.11 1.84 3.45 -51.93 -0.18 1.66 16 46 H 0.03 0.39 8.01 -51.93 -0.42 -0.02 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.03 0.38 7.68 -51.93 -0.40 -0.02 16 52 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -28.65 371.84 -11.13 -39.77 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -8.71 Total: 12.46 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -3.01 Total: -28.83 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.94 Total: -46.88 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.08 Total: 17.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.65 -11.13 -39.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.857 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds