Wall clock time and date at job start Tue Mar 31 2020 11:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47562 * 2 1 4 4 H 1.08999 * 109.46672 * 37.34851 * 3 2 1 5 5 C 1.50697 * 109.47195 * 157.34584 * 3 2 1 6 6 H 1.08000 * 119.99839 * 119.99980 * 5 3 2 7 7 C 1.37872 * 120.00260 * 299.99900 * 5 3 2 8 8 N 1.31516 * 120.00413 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99864 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47276 * 89.99910 * 9 7 5 11 11 H 1.48504 * 109.47030 * 209.99385 * 9 7 5 12 12 H 1.48491 * 109.47200 * 329.99859 * 9 7 5 13 13 N 1.46894 * 109.47000 * 277.35060 * 3 2 1 14 14 C 1.46902 * 111.00593 * 86.84881 * 13 3 2 15 15 H 1.08996 * 109.46720 * 323.60730 * 14 13 3 16 16 C 1.52999 * 109.46731 * 83.60474 * 14 13 3 17 17 C 1.50699 * 109.47501 * 295.00207 * 16 14 13 18 18 C 1.38238 * 119.99769 * 269.72766 * 17 16 14 19 19 C 1.38234 * 119.99608 * 179.75932 * 18 17 16 20 20 C 1.38237 * 120.00099 * 0.51597 * 19 18 17 21 21 C 1.38237 * 119.99694 * 359.74279 * 20 19 18 22 22 C 1.38228 * 119.99776 * 89.99904 * 17 16 14 23 23 C 1.52996 * 109.47215 * 203.60869 * 14 13 3 24 24 N 1.46905 * 109.47380 * 51.76370 * 23 14 13 25 25 C 1.48535 * 111.00031 * 59.34720 * 24 23 14 26 26 C 1.54938 * 103.22731 * 159.72092 * 25 24 23 27 27 C 1.54600 * 102.91877 * 322.58914 * 26 25 24 28 28 C 1.47896 * 110.99929 * 176.74377 * 24 23 14 29 29 H 1.09001 * 109.47353 * 181.28143 * 1 2 3 30 30 H 1.08997 * 109.47095 * 301.28264 * 1 2 3 31 31 H 1.09005 * 109.46815 * 61.28221 * 1 2 3 32 32 H 1.09003 * 109.47261 * 239.99522 * 2 1 3 33 33 H 1.09005 * 109.47011 * 120.00336 * 2 1 3 34 34 H 0.96998 * 120.00366 * 180.02562 * 8 7 5 35 35 H 1.00901 * 110.99841 * 210.80855 * 13 3 2 36 36 H 1.09006 * 109.46192 * 175.00290 * 16 14 13 37 37 H 1.08994 * 109.46902 * 55.00708 * 16 14 13 38 38 H 1.07994 * 120.00279 * 0.02562 * 18 17 16 39 39 H 1.07998 * 120.00431 * 180.23130 * 19 18 17 40 40 H 1.07995 * 120.00617 * 179.71573 * 20 19 18 41 41 H 1.08009 * 119.99980 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.00470 * 0.02562 * 22 17 16 43 43 H 1.09001 * 109.46686 * 171.76333 * 23 14 13 44 44 H 1.08998 * 109.47354 * 291.76057 * 23 14 13 45 45 H 1.08996 * 110.66848 * 278.16127 * 25 24 23 46 46 H 1.09001 * 110.66769 * 41.28559 * 25 24 23 47 47 H 1.08993 * 110.72276 * 204.22855 * 26 25 24 48 48 H 1.09000 * 110.72035 * 80.94296 * 26 25 24 49 49 H 1.08999 * 110.30318 * 263.03610 * 27 26 25 50 50 H 1.09001 * 110.30522 * 140.87837 * 27 26 25 51 51 H 1.09001 * 109.91748 * 333.50774 * 28 24 23 52 52 H 1.09000 * 109.91789 * 94.60666 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3910 2.0573 0.6235 5 6 3.4437 1.4789 0.5472 6 1 4.2522 1.8516 -0.0642 7 6 3.6958 1.0365 1.8285 8 7 4.9207 1.0688 2.3063 9 14 2.2976 0.3913 2.8859 10 1 2.1524 -1.0716 2.6757 11 1 2.5945 0.6587 4.3162 12 1 1.0345 1.0736 2.5065 13 7 2.0363 1.9632 -1.3736 14 6 0.7278 2.5367 -1.7157 15 1 -0.0609 1.9448 -1.2512 16 6 0.6530 3.9768 -1.2046 17 6 0.7078 3.9790 0.3014 18 6 -0.4613 3.9081 1.0356 19 6 -0.4107 3.9051 2.4171 20 6 0.8083 3.9837 3.0642 21 6 1.9770 4.0600 2.3299 22 6 1.9267 4.0575 0.9484 23 6 0.5471 2.5245 -3.2349 24 7 0.8139 1.1744 -3.7490 25 6 -0.1067 0.1810 -3.1390 26 6 -0.0570 -1.0059 -4.1337 27 6 0.0254 -0.3021 -5.5077 28 6 0.5732 1.1052 -5.2066 29 1 -0.3634 -1.0274 0.0230 30 1 -0.3633 0.5336 0.8782 31 1 -0.3633 0.4938 -0.9013 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.0982 0.7572 3.2076 35 1 2.7733 2.6394 -1.5059 36 1 -0.2812 4.4313 -1.5349 37 1 1.4939 4.5467 -1.5997 38 1 -1.4139 3.8508 0.5301 39 1 -1.3238 3.8460 2.9908 40 1 0.8476 3.9860 4.1435 41 1 2.9294 4.1218 2.8355 42 1 2.8398 4.1177 0.3748 43 1 -0.4750 2.8118 -3.4814 44 1 1.2425 3.2302 -3.6892 45 1 0.2535 -0.1248 -2.1568 46 1 -1.1172 0.5840 -3.0709 47 1 -0.9632 -1.6072 -4.0620 48 1 0.8281 -1.6178 -3.9600 49 1 -0.9649 -0.2343 -5.9579 50 1 0.7059 -0.8398 -6.1679 51 1 -0.1584 1.8587 -5.4984 52 1 1.5070 1.2664 -5.7452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:35 Heat of formation + Delta-G solvation = 32.261197 kcal Electronic energy + Delta-G solvation = -29309.396926 eV Core-core repulsion = 25887.427913 eV Total energy + Delta-G solvation = -3421.969013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99875 -39.64427 -37.90959 -35.63039 -33.89087 -32.94085 -31.98460 -31.47374 -30.30453 -29.32554 -27.78034 -26.16243 -24.36354 -23.38672 -22.74081 -21.97607 -21.56868 -21.37076 -20.89366 -18.63009 -17.74943 -17.38099 -16.82696 -16.57707 -16.27916 -15.82009 -15.62015 -15.23360 -15.14809 -14.80333 -14.55837 -14.45420 -14.20325 -14.13978 -13.83522 -13.65608 -13.43900 -13.21388 -13.12655 -12.91240 -12.76422 -12.46703 -12.36448 -12.20013 -12.12014 -12.01314 -11.77590 -11.73981 -11.56111 -11.51592 -11.43393 -11.28722 -10.90435 -10.77749 -10.60976 -9.63404 -9.56763 -8.97048 -8.47213 -8.19448 -6.16302 0.57357 0.68070 1.29259 1.35093 1.44487 2.37494 2.97915 3.19693 3.27411 3.69946 3.84995 3.93907 4.01816 4.06482 4.19966 4.22546 4.26614 4.35923 4.40217 4.46267 4.49366 4.52067 4.58556 4.60543 4.68667 4.74223 4.76117 4.84407 4.89570 4.92898 4.97862 5.03680 5.07114 5.11558 5.16564 5.19980 5.23833 5.28602 5.30083 5.31468 5.35528 5.43554 5.53156 5.67244 5.74357 5.81197 5.87579 5.91456 6.17662 6.26162 6.27187 6.41792 6.73605 6.93148 7.09777 7.49493 8.96285 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.005739 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.722837 B = 4877.513685 C = 5724.897368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C 0.183 3.817 4 H 0.041 0.959 5 C -0.485 4.485 6 H 0.035 0.965 7 C 0.033 3.967 8 N -0.950 5.950 9 Si 0.922 3.078 10 H -0.291 1.291 11 H -0.312 1.312 12 H -0.233 1.233 13 N -0.652 5.652 14 C 0.085 3.915 15 H 0.080 0.920 16 C -0.103 4.103 17 C -0.085 4.085 18 C -0.127 4.127 19 C -0.130 4.130 20 C -0.144 4.144 21 C -0.127 4.127 22 C -0.081 4.081 23 C 0.067 3.933 24 N -0.508 5.508 25 C 0.016 3.984 26 C -0.124 4.124 27 C -0.124 4.124 28 C 0.032 3.968 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.257 0.743 35 H 0.327 0.673 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.041 0.959 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.047 0.953 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.787 3.861 -10.571 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.058 0.942 5 C -0.523 4.523 6 H 0.053 0.947 7 C -0.163 4.163 8 N -0.592 5.592 9 Si 0.752 3.248 10 H -0.219 1.219 11 H -0.241 1.241 12 H -0.156 1.156 13 N -0.282 5.282 14 C -0.025 4.025 15 H 0.098 0.902 16 C -0.143 4.143 17 C -0.085 4.085 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.162 4.162 21 C -0.145 4.145 22 C -0.099 4.099 23 C -0.062 4.062 24 N -0.232 5.232 25 C -0.111 4.111 26 C -0.163 4.163 27 C -0.162 4.162 28 C -0.096 4.096 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.066 0.934 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.282 3.110 -10.614 19.683 hybrid contribution -0.098 0.369 1.552 1.598 sum -16.380 3.479 -9.062 19.040 Atomic orbital electron populations 1.22334 0.96157 1.01444 1.02137 1.21885 0.95084 0.99879 0.99068 1.19772 0.94272 0.91503 0.87115 0.94194 1.21308 0.93844 1.39548 0.97624 0.94670 1.25357 0.96178 0.95995 0.98805 1.70034 1.21369 1.50616 1.17205 0.86292 0.83333 0.78344 0.76851 1.21853 1.24062 1.15563 1.60470 1.03180 1.39602 1.24915 1.21916 0.93583 0.92306 0.94739 0.90225 1.21339 1.03902 0.98652 0.90388 1.19891 0.92808 0.99441 0.96403 1.21194 0.98110 1.01163 0.93967 1.21290 0.97714 1.00667 0.95071 1.21259 0.93077 1.01727 1.00091 1.21036 0.97840 1.00622 0.95001 1.20884 0.97270 0.97424 0.94346 1.22218 0.99012 0.90817 0.94162 1.64658 1.50339 1.05044 1.03181 1.23711 0.94106 0.93001 1.00279 1.22472 1.01896 0.97224 0.94665 1.22354 1.01509 0.95068 0.97224 1.22917 0.99957 0.97186 0.89565 0.92652 0.94257 0.89299 0.92548 0.96142 0.93356 0.85563 0.88680 0.90951 0.84013 0.84077 0.85979 0.88576 0.87881 0.93596 0.91018 0.89091 0.94067 0.90096 0.92338 0.90372 0.90961 0.93447 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 8.12 71.98 0.58 -5.00 16 2 C -0.12 -5.17 4.36 30.59 0.13 -5.04 16 3 C 0.18 7.89 0.61 44.17 0.03 7.92 16 4 H 0.04 1.74 2.78 -2.39 -0.01 1.73 16 5 C -0.48 -26.26 7.71 25.60 0.20 -26.06 16 6 H 0.04 2.14 7.83 -2.91 -0.02 2.12 16 7 C 0.03 1.91 5.42 84.65 0.46 2.37 16 8 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 9 Si 0.92 46.40 23.98 68.60 1.65 48.04 16 10 H -0.29 -14.73 6.78 99.48 0.67 -14.06 16 11 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 12 H -0.23 -10.78 5.82 99.48 0.58 -10.20 16 13 N -0.65 -24.18 5.58 -473.33 -2.64 -26.82 16 14 C 0.09 2.43 1.72 44.91 0.08 2.50 16 15 H 0.08 2.35 4.17 -2.39 -0.01 2.34 16 16 C -0.10 -2.68 4.82 29.85 0.14 -2.54 16 17 C -0.09 -2.68 3.36 -19.87 -0.07 -2.74 16 18 C -0.13 -3.57 9.63 22.27 0.21 -3.36 16 19 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 20 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 21 C -0.13 -4.97 9.58 22.27 0.21 -4.76 16 22 C -0.08 -3.06 5.93 22.27 0.13 -2.93 16 23 C 0.07 1.62 4.54 86.30 0.39 2.02 16 24 N -0.51 -13.50 4.99 -883.03 -4.41 -17.91 16 25 C 0.02 0.41 4.77 86.65 0.41 0.83 16 26 C -0.12 -2.73 7.06 31.80 0.22 -2.50 16 27 C -0.12 -2.30 6.93 31.47 0.22 -2.09 16 28 C 0.03 0.68 6.70 86.45 0.58 1.26 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.37 7.39 -2.39 -0.02 1.35 16 31 H 0.09 2.65 2.72 -2.38 -0.01 2.65 16 32 H 0.06 2.48 7.50 -2.39 -0.02 2.46 16 33 H 0.02 0.98 3.67 -2.38 -0.01 0.97 16 34 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.33 12.92 7.86 -89.69 -0.70 12.22 16 36 H 0.09 1.92 8.08 -2.38 -0.02 1.90 16 37 H 0.07 1.88 7.99 -2.39 -0.02 1.86 16 38 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 39 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 40 H 0.12 3.74 8.06 -2.91 -0.02 3.71 16 41 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.10 4.25 7.63 -2.91 -0.02 4.23 16 43 H 0.05 0.94 7.99 -2.39 -0.02 0.92 16 44 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 45 H 0.09 2.72 3.45 -2.39 -0.01 2.72 16 46 H 0.04 0.94 8.01 -2.39 -0.02 0.92 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.05 0.88 7.68 -2.39 -0.02 0.87 16 52 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.84 371.84 -0.68 -65.52 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.04 Total: 38.58 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 4.39 Total: -48.37 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -6.75 Total: -103.77 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.65 Total: 48.04 kcal Total: -64.84 -0.68 -65.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.778 kcal (2) G-P(sol) polarization free energy of solvation -64.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds