Wall clock time and date at job start Tue Mar 31 2020 11:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47325 * 2 1 4 4 H 1.09002 * 109.46937 * 317.02975 * 3 2 1 5 5 C 1.50694 * 109.47601 * 197.02932 * 3 2 1 6 6 H 1.08001 * 119.99893 * 352.57510 * 5 3 2 7 7 C 1.37876 * 120.00239 * 172.58040 * 5 3 2 8 8 N 1.31512 * 120.00016 * 162.83900 * 7 5 3 9 9 Si 1.86795 * 119.99778 * 342.83081 * 7 5 3 10 10 H 1.48498 * 109.47171 * 90.07947 * 9 7 5 11 11 H 1.48504 * 109.47077 * 210.07523 * 9 7 5 12 12 H 1.48497 * 109.47447 * 330.07854 * 9 7 5 13 13 N 1.46907 * 109.46936 * 77.02570 * 3 2 1 14 14 C 1.46895 * 111.00082 * 274.57099 * 13 3 2 15 15 C 1.50701 * 109.47249 * 278.19673 * 14 13 3 16 16 C 1.38236 * 119.99733 * 274.61520 * 15 14 13 17 17 C 1.38239 * 119.99824 * 179.80861 * 16 15 14 18 18 C 1.38236 * 120.00165 * 0.39726 * 17 16 15 19 19 C 1.38235 * 119.99679 * 359.85925 * 18 17 16 20 20 C 1.38234 * 120.00250 * 359.94933 * 19 18 17 21 21 C 1.46892 * 111.00010 * 38.52691 * 13 3 2 22 22 H 1.09000 * 109.47395 * 37.61087 * 21 13 3 23 23 C 1.52998 * 109.47091 * 157.61272 * 21 13 3 24 24 C 1.53006 * 109.47057 * 179.97438 * 23 21 13 25 25 C 1.52992 * 109.47271 * 300.00051 * 24 23 21 26 26 H 1.09003 * 109.47303 * 299.99727 * 25 24 23 27 27 N 1.46900 * 109.47270 * 180.02562 * 25 24 23 28 28 C 1.52998 * 109.47122 * 59.99988 * 25 24 23 29 29 C 1.53000 * 109.47433 * 299.99846 * 28 25 24 30 30 H 1.09005 * 109.46973 * 168.60797 * 1 2 3 31 31 H 1.08994 * 109.47157 * 288.60690 * 1 2 3 32 32 H 1.08996 * 109.46958 * 48.60937 * 1 2 3 33 33 H 1.08997 * 109.47745 * 240.00146 * 2 1 3 34 34 H 1.09006 * 109.47246 * 119.99933 * 2 1 3 35 35 H 0.97001 * 119.99800 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47249 * 158.19543 * 14 13 3 37 37 H 1.09002 * 109.47467 * 38.19237 * 14 13 3 38 38 H 1.08000 * 120.00153 * 359.97438 * 16 15 14 39 39 H 1.07998 * 120.00216 * 180.23275 * 17 16 15 40 40 H 1.07998 * 120.00243 * 179.83206 * 18 17 16 41 41 H 1.08009 * 120.00063 * 179.97438 * 19 18 17 42 42 H 1.08008 * 120.00134 * 180.02562 * 20 19 18 43 43 H 1.08996 * 109.47129 * 299.99286 * 23 21 13 44 44 H 1.08994 * 109.47432 * 60.00287 * 23 21 13 45 45 H 1.09003 * 109.46734 * 60.00127 * 24 23 21 46 46 H 1.09003 * 109.47185 * 179.97438 * 24 23 21 47 47 H 1.00903 * 111.00350 * 180.02562 * 27 25 24 48 48 H 1.00906 * 111.00076 * 303.95059 * 27 25 24 49 49 H 1.09000 * 109.47152 * 60.00236 * 28 25 24 50 50 H 1.09005 * 109.47340 * 179.97438 * 28 25 24 51 51 H 1.09000 * 109.47271 * 300.00318 * 29 28 25 52 52 H 1.08993 * 109.47670 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4522 2.0357 -0.7005 5 6 3.4882 1.4633 -0.4161 6 1 4.0278 0.5361 -0.5402 7 6 4.1245 2.6662 -0.6382 8 7 5.4382 2.7197 -0.6670 9 14 3.1204 4.2197 -0.8986 10 1 2.8761 4.8764 0.4107 11 1 3.8659 5.1479 -1.7863 12 1 1.8212 3.8700 -1.5270 13 7 1.9101 2.0078 1.3497 14 6 0.5655 2.5601 1.5620 15 6 0.4902 3.9422 0.9660 16 6 0.9035 5.0361 1.7031 17 6 0.8381 6.3035 1.1550 18 6 0.3519 6.4778 -0.1272 19 6 -0.0662 5.3844 -0.8624 20 6 0.0028 4.1166 -0.3158 21 6 2.2354 1.0060 2.3736 22 1 3.0633 0.3876 2.0268 23 6 2.6351 1.7132 3.6701 24 6 2.9734 0.6697 4.7368 25 6 1.7500 -0.2125 4.9933 26 1 0.9222 0.4062 5.3399 27 7 2.0745 -1.2139 6.0179 28 6 1.3502 -0.9196 3.6968 29 6 1.0119 0.1238 2.6301 30 1 -0.3633 -1.0075 -0.2030 31 1 -0.3633 0.3279 0.9739 32 1 -0.3633 0.6795 -0.7710 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8858 3.5660 -0.8230 36 1 0.3593 2.6136 2.6309 37 1 -0.1716 1.9167 1.0815 38 1 1.2798 4.9004 2.7063 39 1 1.1645 7.1578 1.7295 40 1 0.2983 7.4683 -0.5545 41 1 -0.4465 5.5206 -1.8641 42 1 -0.3236 3.2623 -0.8903 43 1 3.5065 2.3419 3.4873 44 1 1.8072 2.3314 4.0170 45 1 3.8012 0.0510 4.3902 46 1 3.2586 1.1734 5.6604 47 1 1.2820 -1.8098 6.2050 48 1 2.8803 -1.7585 5.7488 49 1 2.1780 -1.5383 3.3502 50 1 0.4789 -1.5485 3.8796 51 1 0.1841 0.7425 2.9767 52 1 0.7267 -0.3800 1.7066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:54 Heat of formation + Delta-G solvation = 64.930215 kcal Electronic energy + Delta-G solvation = -29354.863859 eV Core-core repulsion = 25934.311481 eV Total energy + Delta-G solvation = -3420.552378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19263 -38.66551 -36.75798 -33.05037 -32.45689 -32.16683 -30.55074 -30.48982 -29.94232 -27.91816 -26.63485 -24.21028 -22.74819 -22.36335 -22.19203 -21.21698 -20.65537 -19.63761 -18.58579 -16.76471 -16.41008 -16.10704 -15.59423 -15.23109 -14.87399 -14.50237 -14.40026 -14.16277 -13.87920 -13.69077 -13.33077 -12.99438 -12.77774 -12.52623 -12.47575 -12.28430 -12.07553 -12.01777 -11.60890 -11.51090 -11.29255 -10.97421 -10.92365 -10.77083 -10.72937 -10.51858 -10.46568 -10.45568 -10.10062 -9.86982 -9.68608 -9.59079 -9.35915 -9.12045 -8.53276 -8.44540 -8.15882 -7.97640 -7.05961 -5.95578 -3.97197 1.79610 1.85385 3.61201 3.64103 3.72732 4.19092 4.57190 4.71960 4.86005 4.93546 5.08492 5.24047 5.29610 5.36710 5.39854 5.47451 5.49188 5.53642 5.59216 5.62946 5.71716 5.75739 5.82034 5.84654 5.89132 5.90495 5.95256 6.05418 6.08111 6.17180 6.22941 6.29232 6.32224 6.36938 6.45464 6.48463 6.49331 6.53064 6.60621 6.65849 6.78260 6.88360 6.90303 6.94486 7.02213 7.13386 7.17817 7.18078 7.43337 7.44633 7.79903 8.13049 8.37447 8.63943 9.06807 9.73374 11.12743 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.005780 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.673695 B = 4843.362046 C = 5320.127708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.160 4.160 3 C 0.181 3.819 4 H 0.044 0.956 5 C -0.514 4.514 6 H 0.065 0.935 7 C 0.094 3.906 8 N -0.893 5.893 9 Si 0.873 3.127 10 H -0.248 1.248 11 H -0.317 1.317 12 H -0.255 1.255 13 N -0.511 5.511 14 C 0.070 3.930 15 C -0.069 4.069 16 C -0.088 4.088 17 C -0.129 4.129 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.098 4.098 21 C 0.100 3.900 22 H 0.088 0.912 23 C -0.105 4.105 24 C -0.108 4.108 25 C 0.091 3.909 26 H 0.074 0.926 27 N -0.848 5.848 28 C -0.145 4.145 29 C -0.193 4.193 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.335 0.665 48 H 0.338 0.662 49 H 0.059 0.941 50 H 0.050 0.950 51 H 0.057 0.943 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.939 -1.604 7.376 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.198 4.198 3 C 0.076 3.924 4 H 0.062 0.938 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.111 4.111 8 N -0.529 5.529 9 Si 0.702 3.298 10 H -0.172 1.172 11 H -0.246 1.246 12 H -0.179 1.179 13 N -0.234 5.234 14 C -0.057 4.057 15 C -0.069 4.069 16 C -0.107 4.107 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.009 4.009 22 H 0.106 0.894 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.021 4.021 26 H 0.092 0.908 27 N -0.376 5.376 28 C -0.186 4.186 29 C -0.232 4.232 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.147 0.853 48 H 0.150 0.850 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.075 0.925 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.321 -0.489 7.895 13.810 hybrid contribution -0.948 -0.433 -1.124 1.533 sum -12.269 -0.922 6.771 14.044 Atomic orbital electron populations 1.22422 0.98280 1.00463 1.01651 1.22631 0.93224 1.01563 1.02421 1.19865 0.97612 0.89003 0.85950 0.93844 1.20772 0.93860 0.93872 1.46704 0.91711 1.24939 0.94279 0.99285 0.92557 1.70062 1.08474 1.26482 1.47908 0.87065 0.80166 0.82836 0.79781 1.17206 1.24602 1.17947 1.63038 1.21740 1.34414 1.04219 1.21410 0.93503 0.91681 0.99108 1.19882 0.97195 0.95708 0.94163 1.20884 0.97816 0.92053 0.99922 1.21008 1.00698 0.97175 0.95805 1.20985 1.00676 0.98351 0.95006 1.21006 1.01418 0.93007 0.99443 1.20952 0.99061 0.96849 0.94764 1.21463 0.96229 0.91912 0.91274 0.89427 1.21514 1.01583 0.97279 0.93974 1.21512 0.96746 0.97498 0.98871 1.21508 0.98240 0.93359 0.88948 0.90795 1.59004 1.10017 1.21347 1.47196 1.22310 1.00517 0.98632 0.97099 1.23565 1.00060 0.98648 1.00891 0.93988 0.91348 0.93182 0.92339 0.90487 0.93124 0.91498 0.93252 0.86549 0.86811 0.86863 0.86780 0.86674 0.90940 0.93007 0.92171 0.91881 0.85319 0.85004 0.92266 0.93149 0.92484 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 7.49 37.15 0.28 -2.30 16 2 C -0.16 -2.94 4.73 -26.73 -0.13 -3.07 16 3 C 0.18 3.90 1.12 -68.86 -0.08 3.82 16 4 H 0.04 0.99 4.15 -51.93 -0.22 0.77 16 5 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 6 H 0.06 1.92 8.00 -52.49 -0.42 1.50 16 7 C 0.09 2.69 5.44 -17.82 -0.10 2.59 16 8 N -0.89 -27.42 13.96 55.43 0.77 -26.65 16 9 Si 0.87 22.02 21.88 -169.99 -3.72 18.30 16 10 H -0.25 -6.09 4.56 56.52 0.26 -5.83 16 11 H -0.32 -8.57 7.11 56.52 0.40 -8.16 16 12 H -0.25 -6.01 4.14 56.52 0.23 -5.77 16 13 N -0.51 -9.94 3.44 -221.53 -0.76 -10.70 16 14 C 0.07 1.19 3.47 -4.98 -0.02 1.17 16 15 C -0.07 -1.23 3.33 -104.62 -0.35 -1.57 16 16 C -0.09 -1.53 7.98 -39.58 -0.32 -1.85 16 17 C -0.13 -2.09 9.27 -39.58 -0.37 -2.46 16 18 C -0.13 -2.09 9.56 -39.58 -0.38 -2.47 16 19 C -0.13 -2.16 8.52 -39.58 -0.34 -2.50 16 20 C -0.10 -1.72 5.73 -39.58 -0.23 -1.95 16 21 C 0.10 1.73 1.57 -67.72 -0.11 1.62 16 22 H 0.09 1.79 6.73 -51.93 -0.35 1.44 16 23 C -0.10 -1.69 5.34 -26.73 -0.14 -1.83 16 24 C -0.11 -1.50 5.46 -26.73 -0.15 -1.64 16 25 C 0.09 1.11 3.25 -67.72 -0.22 0.89 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 N -0.85 -9.15 9.25 -4.67 -0.04 -9.20 16 28 C -0.15 -1.80 5.49 -26.73 -0.15 -1.95 16 29 C -0.19 -2.73 2.76 -26.73 -0.07 -2.81 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.96 3.70 -51.93 -0.19 0.77 16 32 H 0.05 0.76 7.91 -51.93 -0.41 0.35 16 33 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 34 H 0.08 1.38 4.02 -51.93 -0.21 1.17 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.07 1.04 5.68 -51.93 -0.29 0.75 16 37 H 0.05 0.79 4.28 -51.93 -0.22 0.57 16 38 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 42 H 0.12 1.95 7.57 -52.48 -0.40 1.56 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.79 6.97 -51.93 -0.36 0.43 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.34 3.06 9.04 -39.29 -0.36 2.71 16 48 H 0.34 3.43 8.98 -39.29 -0.35 3.07 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.06 0.79 6.16 -51.93 -0.32 0.47 16 52 H 0.11 1.62 2.36 -51.93 -0.12 1.49 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -29.95 354.49 -10.29 -40.23 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -8.74 Total: 13.16 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -3.14 Total: -30.49 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.03 Total: -46.54 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -3.72 Total: 18.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.95 -10.29 -40.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.163 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds