Wall clock time and date at job start Tue Mar 31 2020 11:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47325 * 2 1 4 4 H 1.09002 * 109.46937 * 317.02975 * 3 2 1 5 5 C 1.50694 * 109.47601 * 197.02932 * 3 2 1 6 6 H 1.08001 * 119.99893 * 352.57510 * 5 3 2 7 7 C 1.37876 * 120.00239 * 172.58040 * 5 3 2 8 8 N 1.31512 * 120.00016 * 162.83900 * 7 5 3 9 9 Si 1.86795 * 119.99778 * 342.83081 * 7 5 3 10 10 H 1.48498 * 109.47171 * 90.07947 * 9 7 5 11 11 H 1.48504 * 109.47077 * 210.07523 * 9 7 5 12 12 H 1.48497 * 109.47447 * 330.07854 * 9 7 5 13 13 N 1.46907 * 109.46936 * 77.02570 * 3 2 1 14 14 C 1.46895 * 111.00082 * 274.57099 * 13 3 2 15 15 C 1.50701 * 109.47249 * 278.19673 * 14 13 3 16 16 C 1.38236 * 119.99733 * 274.61520 * 15 14 13 17 17 C 1.38239 * 119.99824 * 179.80861 * 16 15 14 18 18 C 1.38236 * 120.00165 * 0.39726 * 17 16 15 19 19 C 1.38235 * 119.99679 * 359.85925 * 18 17 16 20 20 C 1.38234 * 120.00250 * 359.94933 * 19 18 17 21 21 C 1.46892 * 111.00010 * 38.52691 * 13 3 2 22 22 H 1.09000 * 109.47395 * 37.61087 * 21 13 3 23 23 C 1.52998 * 109.47091 * 157.61272 * 21 13 3 24 24 C 1.53006 * 109.47057 * 179.97438 * 23 21 13 25 25 C 1.52992 * 109.47271 * 300.00051 * 24 23 21 26 26 H 1.09003 * 109.47303 * 299.99727 * 25 24 23 27 27 N 1.46900 * 109.47270 * 180.02562 * 25 24 23 28 28 C 1.52998 * 109.47122 * 59.99988 * 25 24 23 29 29 C 1.53000 * 109.47433 * 299.99846 * 28 25 24 30 30 H 1.09005 * 109.46973 * 168.60797 * 1 2 3 31 31 H 1.08994 * 109.47157 * 288.60690 * 1 2 3 32 32 H 1.08996 * 109.46958 * 48.60937 * 1 2 3 33 33 H 1.08997 * 109.47745 * 240.00146 * 2 1 3 34 34 H 1.09006 * 109.47246 * 119.99933 * 2 1 3 35 35 H 0.97001 * 119.99800 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47249 * 158.19543 * 14 13 3 37 37 H 1.09002 * 109.47467 * 38.19237 * 14 13 3 38 38 H 1.08000 * 120.00153 * 359.97438 * 16 15 14 39 39 H 1.07998 * 120.00216 * 180.23275 * 17 16 15 40 40 H 1.07998 * 120.00243 * 179.83206 * 18 17 16 41 41 H 1.08009 * 120.00063 * 179.97438 * 19 18 17 42 42 H 1.08008 * 120.00134 * 180.02562 * 20 19 18 43 43 H 1.08996 * 109.47129 * 299.99286 * 23 21 13 44 44 H 1.08994 * 109.47432 * 60.00287 * 23 21 13 45 45 H 1.09003 * 109.46734 * 60.00127 * 24 23 21 46 46 H 1.09003 * 109.47185 * 179.97438 * 24 23 21 47 47 H 1.00903 * 111.00350 * 180.02562 * 27 25 24 48 48 H 1.00906 * 111.00076 * 303.95059 * 27 25 24 49 49 H 1.09000 * 109.47152 * 60.00236 * 28 25 24 50 50 H 1.09005 * 109.47340 * 179.97438 * 28 25 24 51 51 H 1.09000 * 109.47271 * 300.00318 * 29 28 25 52 52 H 1.08993 * 109.47670 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4522 2.0357 -0.7005 5 6 3.4882 1.4633 -0.4161 6 1 4.0278 0.5361 -0.5402 7 6 4.1245 2.6662 -0.6382 8 7 5.4382 2.7197 -0.6670 9 14 3.1204 4.2197 -0.8986 10 1 2.8761 4.8764 0.4107 11 1 3.8659 5.1479 -1.7863 12 1 1.8212 3.8700 -1.5270 13 7 1.9101 2.0078 1.3497 14 6 0.5655 2.5601 1.5620 15 6 0.4902 3.9422 0.9660 16 6 0.9035 5.0361 1.7031 17 6 0.8381 6.3035 1.1550 18 6 0.3519 6.4778 -0.1272 19 6 -0.0662 5.3844 -0.8624 20 6 0.0028 4.1166 -0.3158 21 6 2.2354 1.0060 2.3736 22 1 3.0633 0.3876 2.0268 23 6 2.6351 1.7132 3.6701 24 6 2.9734 0.6697 4.7368 25 6 1.7500 -0.2125 4.9933 26 1 0.9222 0.4062 5.3399 27 7 2.0745 -1.2139 6.0179 28 6 1.3502 -0.9196 3.6968 29 6 1.0119 0.1238 2.6301 30 1 -0.3633 -1.0075 -0.2030 31 1 -0.3633 0.3279 0.9739 32 1 -0.3633 0.6795 -0.7710 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8858 3.5660 -0.8230 36 1 0.3593 2.6136 2.6309 37 1 -0.1716 1.9167 1.0815 38 1 1.2798 4.9004 2.7063 39 1 1.1645 7.1578 1.7295 40 1 0.2983 7.4683 -0.5545 41 1 -0.4465 5.5206 -1.8641 42 1 -0.3236 3.2623 -0.8903 43 1 3.5065 2.3419 3.4873 44 1 1.8072 2.3314 4.0170 45 1 3.8012 0.0510 4.3902 46 1 3.2586 1.1734 5.6604 47 1 1.2820 -1.8098 6.2050 48 1 2.8803 -1.7585 5.7488 49 1 2.1780 -1.5383 3.3502 50 1 0.4789 -1.5485 3.8796 51 1 0.1841 0.7425 2.9767 52 1 0.7267 -0.3800 1.7066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:53 Heat of formation + Delta-G solvation = 44.750841 kcal Electronic energy + Delta-G solvation = -29355.738903 eV Core-core repulsion = 25934.311481 eV Total energy + Delta-G solvation = -3421.427421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56055 -39.89681 -38.00768 -34.71200 -33.99769 -33.58381 -31.88051 -31.75527 -31.19644 -29.51438 -27.85800 -25.86202 -24.23659 -23.55843 -23.45782 -22.49663 -21.91793 -21.00860 -20.01547 -18.77151 -17.67277 -17.42381 -16.60035 -16.55208 -16.53495 -15.93023 -15.65443 -15.56735 -15.12682 -15.02987 -14.79438 -14.28979 -14.16477 -14.02193 -13.77958 -13.60161 -13.45976 -13.36999 -13.27610 -12.88415 -12.59240 -12.39722 -12.30173 -12.10726 -11.98765 -11.84529 -11.80601 -11.73918 -11.65248 -11.64028 -11.31800 -11.06840 -10.88300 -10.75478 -10.48562 -9.49868 -9.45581 -9.44351 -8.56103 -8.18550 -6.22074 0.52054 0.57956 1.52660 1.61401 1.65086 2.58192 2.87484 3.12780 3.55471 3.75073 3.82376 3.96648 4.01554 4.09813 4.22987 4.24421 4.27184 4.31334 4.35893 4.37216 4.44077 4.49845 4.52881 4.61924 4.66499 4.68734 4.71808 4.81314 4.83707 4.93907 4.95832 5.02464 5.12389 5.18978 5.20257 5.21572 5.23965 5.25522 5.28611 5.32349 5.36172 5.56962 5.61072 5.63963 5.66486 5.67290 5.78322 5.84464 6.19666 6.25553 6.29779 6.65338 6.66119 6.81933 6.96299 7.51468 8.92643 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.005780 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.673695 B = 4843.362046 C = 5320.127708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.157 4.157 3 C 0.190 3.810 4 H 0.040 0.960 5 C -0.509 4.509 6 H 0.020 0.980 7 C 0.036 3.964 8 N -0.947 5.947 9 Si 0.935 3.065 10 H -0.237 1.237 11 H -0.342 1.342 12 H -0.228 1.228 13 N -0.531 5.531 14 C 0.075 3.925 15 C -0.085 4.085 16 C -0.106 4.106 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.140 4.140 20 C -0.117 4.117 21 C 0.104 3.896 22 H 0.045 0.955 23 C -0.098 4.098 24 C -0.102 4.102 25 C 0.100 3.900 26 H 0.080 0.920 27 N -0.849 5.849 28 C -0.139 4.139 29 C -0.184 4.184 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.037 0.963 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.348 0.652 48 H 0.341 0.659 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.624 -1.292 8.765 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.196 4.196 3 C 0.084 3.916 4 H 0.058 0.942 5 C -0.547 4.547 6 H 0.039 0.961 7 C -0.162 4.162 8 N -0.587 5.587 9 Si 0.762 3.238 10 H -0.160 1.160 11 H -0.273 1.273 12 H -0.152 1.152 13 N -0.254 5.254 14 C -0.052 4.052 15 C -0.086 4.086 16 C -0.124 4.124 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.136 4.136 21 C -0.005 4.005 22 H 0.064 0.936 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.011 4.011 26 H 0.099 0.901 27 N -0.378 5.378 28 C -0.180 4.180 29 C -0.222 4.222 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.137 0.863 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.162 0.838 48 H 0.154 0.846 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.091 0.909 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.047 -0.210 9.307 17.694 hybrid contribution 0.253 -0.578 -1.526 1.652 sum -14.795 -0.788 7.780 16.734 Atomic orbital electron populations 1.22309 0.94812 1.02112 1.02588 1.22550 0.96201 0.99128 1.01685 1.19585 0.93744 0.91202 0.87085 0.94180 1.21143 0.96515 0.91771 1.45320 0.96147 1.25763 0.94942 1.02641 0.92903 1.70213 1.10420 1.26894 1.51153 0.86180 0.79220 0.78667 0.79722 1.16041 1.27270 1.15158 1.62575 1.24261 1.35241 1.03275 1.21437 0.91800 0.91531 1.00385 1.20040 0.97873 0.96085 0.94620 1.21106 0.98280 0.92640 1.00412 1.21370 1.00160 0.97553 0.96337 1.21382 0.99653 0.99597 0.94823 1.21361 1.01109 0.92811 1.00545 1.21152 0.99801 0.97652 0.94953 1.21374 0.96493 0.91642 0.90960 0.93636 1.21415 1.00587 0.97547 0.94132 1.21435 0.97480 0.97129 0.98045 1.21349 0.97082 0.93444 0.89260 0.90141 1.58948 1.10825 1.21650 1.46386 1.22271 1.01138 0.98167 0.96378 1.23403 0.98523 0.98615 1.01667 0.91696 0.89838 0.93084 0.94329 0.90229 0.93637 0.89767 0.91789 0.86132 0.84651 0.84144 0.84742 0.86327 0.94398 0.91458 0.93539 0.91482 0.83821 0.84606 0.93325 0.90721 0.90873 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 7.49 71.98 0.54 -3.84 16 2 C -0.16 -5.71 4.73 30.59 0.14 -5.57 16 3 C 0.19 8.24 1.12 44.17 0.05 8.29 16 4 H 0.04 1.78 4.15 -2.39 -0.01 1.77 16 5 C -0.51 -28.87 8.56 25.60 0.22 -28.65 16 6 H 0.02 1.29 8.00 -2.91 -0.02 1.27 16 7 C 0.04 2.15 5.44 84.65 0.46 2.61 16 8 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 9 Si 0.93 46.82 21.88 68.60 1.50 48.32 16 10 H -0.24 -11.33 4.56 99.48 0.45 -10.87 16 11 H -0.34 -18.45 7.11 99.48 0.71 -17.75 16 12 H -0.23 -10.31 4.14 99.48 0.41 -9.90 16 13 N -0.53 -20.34 3.44 -854.78 -2.94 -23.28 16 14 C 0.08 2.36 3.47 85.56 0.30 2.65 16 15 C -0.09 -2.84 3.33 -19.86 -0.07 -2.91 16 16 C -0.11 -3.43 7.98 22.27 0.18 -3.25 16 17 C -0.14 -4.03 9.27 22.27 0.21 -3.83 16 18 C -0.14 -3.87 9.56 22.27 0.21 -3.66 16 19 C -0.14 -4.20 8.52 22.27 0.19 -4.01 16 20 C -0.12 -3.82 5.73 22.27 0.13 -3.69 16 21 C 0.10 3.57 1.57 44.92 0.07 3.64 16 22 H 0.05 1.95 6.73 -2.39 -0.02 1.93 16 23 C -0.10 -3.13 5.34 30.60 0.16 -2.96 16 24 C -0.10 -2.76 5.46 30.59 0.17 -2.60 16 25 C 0.10 2.18 3.25 44.91 0.15 2.33 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 N -0.85 -16.04 9.25 -168.69 -1.56 -17.60 16 28 C -0.14 -3.06 5.49 30.59 0.17 -2.89 16 29 C -0.18 -4.74 2.76 30.60 0.08 -4.65 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.08 2.02 3.70 -2.39 -0.01 2.01 16 32 H 0.05 1.39 7.91 -2.39 -0.02 1.37 16 33 H 0.04 1.52 8.02 -2.39 -0.02 1.51 16 34 H 0.08 2.85 4.02 -2.38 -0.01 2.84 16 35 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 36 H 0.08 2.33 5.68 -2.39 -0.01 2.32 16 37 H 0.06 1.82 4.28 -2.39 -0.01 1.81 16 38 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.12 3.70 7.57 -2.91 -0.02 3.68 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.92 6.97 -2.39 -0.02 1.91 16 45 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.35 5.18 9.04 -89.69 -0.81 4.37 16 48 H 0.34 6.23 8.98 -89.69 -0.81 5.43 16 49 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 51 H 0.07 1.70 6.16 -2.39 -0.01 1.69 16 52 H 0.11 2.90 2.36 -2.39 -0.01 2.89 16 Total: -1.00 -69.11 354.49 -0.57 -69.68 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -1.23 Total: 37.02 kcal Atomic # 6 Polarization: -56.35 SS G_CDS: 3.36 Total: -52.99 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -4.20 Total: -102.02 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.50 Total: 48.32 kcal Total: -69.11 -0.57 -69.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.431 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds